Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06655

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06645 and HGI48_RS06650 are separated by 197 nucleotidesHGI48_RS06650 and HGI48_RS06655 are separated by 155 nucleotidesHGI48_RS06655 and HGI48_RS06660 overlap by 14 nucleotidesHGI48_RS06660 and HGI48_RS06665 overlap by 1 nucleotides HGI48_RS06645: HGI48_RS06645 - molybdenum-dependent transcriptional regulator, at 1,406,404 to 1,407,195 _RS06645 HGI48_RS06650: HGI48_RS06650 - multidrug efflux pump-associated protein, AcrZ family, at 1,407,393 to 1,407,542 _RS06650 HGI48_RS06655: HGI48_RS06655 - molybdate ABC transporter substrate-binding protein, at 1,407,698 to 1,408,483 _RS06655 HGI48_RS06660: HGI48_RS06660 - molybdate ABC transporter permease subunit, at 1,408,470 to 1,409,159 _RS06660 HGI48_RS06665: HGI48_RS06665 - molybdenum ABC transporter ATP-binding protein ModC, at 1,409,159 to 1,410,217 _RS06665 Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1406.794 kb on + strand, within HGI48_RS06645at 1407.062 kb on + strand, within HGI48_RS06645at 1407.063 kb on - strand, within HGI48_RS06645at 1407.112 kb on + strand, within HGI48_RS06645at 1407.112 kb on + strand, within HGI48_RS06645at 1407.113 kb on - strand, within HGI48_RS06645at 1407.113 kb on - strand, within HGI48_RS06645at 1407.229 kb on + strandat 1407.230 kb on - strandat 1407.230 kb on - strandat 1407.278 kb on + strandat 1407.279 kb on - strandat 1407.297 kb on - strandat 1407.326 kb on + strandat 1407.326 kb on + strandat 1407.326 kb on + strandat 1407.326 kb on + strandat 1407.326 kb on + strandat 1407.327 kb on - strandat 1407.327 kb on - strandat 1407.332 kb on - strandat 1407.393 kb on - strandat 1407.472 kb on - strandat 1407.472 kb on - strand, within HGI48_RS06650at 1407.472 kb on - strand, within HGI48_RS06650at 1407.487 kb on + strand, within HGI48_RS06650at 1407.487 kb on + strand, within HGI48_RS06650at 1407.487 kb on + strand, within HGI48_RS06650at 1407.487 kb on + strand, within HGI48_RS06650at 1407.487 kb on + strand, within HGI48_RS06650at 1407.488 kb on - strand, within HGI48_RS06650at 1407.488 kb on - strand, within HGI48_RS06650at 1407.488 kb on - strand, within HGI48_RS06650at 1407.488 kb on - strandat 1407.541 kb on - strandat 1407.569 kb on + strandat 1407.648 kb on + strandat 1407.649 kb on - strandat 1407.667 kb on - strandat 1407.670 kb on + strandat 1407.670 kb on + strandat 1407.717 kb on - strandat 1407.717 kb on - strandat 1407.717 kb on - strandat 1407.717 kb on - strandat 1407.717 kb on - strandat 1407.748 kb on + strandat 1407.760 kb on + strandat 1407.761 kb on - strandat 1407.862 kb on + strand, within HGI48_RS06655at 1407.862 kb on + strand, within HGI48_RS06655at 1407.862 kb on + strand, within HGI48_RS06655at 1407.876 kb on - strand, within HGI48_RS06655at 1407.962 kb on + strand, within HGI48_RS06655at 1407.973 kb on + strand, within HGI48_RS06655at 1407.974 kb on - strand, within HGI48_RS06655at 1407.974 kb on - strand, within HGI48_RS06655at 1407.974 kb on - strand, within HGI48_RS06655at 1408.039 kb on + strand, within HGI48_RS06655at 1408.040 kb on - strand, within HGI48_RS06655at 1408.151 kb on + strandat 1408.152 kb on - strand, within HGI48_RS06655at 1408.152 kb on - strand, within HGI48_RS06655at 1408.152 kb on - strand, within HGI48_RS06655at 1408.152 kb on - strand, within HGI48_RS06655at 1408.152 kb on - strand, within HGI48_RS06655at 1408.152 kb on - strandat 1408.152 kb on - strand, within HGI48_RS06655at 1408.245 kb on + strand, within HGI48_RS06655at 1408.245 kb on + strand, within HGI48_RS06655at 1408.246 kb on - strand, within HGI48_RS06655at 1408.277 kb on + strand, within HGI48_RS06655at 1408.413 kb on - strandat 1408.445 kb on - strandat 1408.452 kb on - strandat 1408.452 kb on - strandat 1408.673 kb on - strand, within HGI48_RS06660at 1408.740 kb on - strand, within HGI48_RS06660at 1408.884 kb on - strand, within HGI48_RS06660at 1408.884 kb on - strand, within HGI48_RS06660at 1408.916 kb on + strand, within HGI48_RS06660at 1408.916 kb on + strand, within HGI48_RS06660at 1408.916 kb on + strand, within HGI48_RS06660at 1408.917 kb on - strand, within HGI48_RS06660at 1408.917 kb on - strand, within HGI48_RS06660at 1408.917 kb on - strand, within HGI48_RS06660at 1408.930 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strand, within HGI48_RS06660at 1409.025 kb on + strandat 1409.025 kb on + strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.026 kb on - strand, within HGI48_RS06660at 1409.027 kb on + strand, within HGI48_RS06660at 1409.027 kb on + strand, within HGI48_RS06660at 1409.028 kb on - strand, within HGI48_RS06660at 1409.176 kb on + strandat 1409.278 kb on + strand, within HGI48_RS06665at 1409.396 kb on + strand, within HGI48_RS06665at 1409.397 kb on - strand, within HGI48_RS06665

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,406,794 + HGI48_RS06645 0.49 -1.4
1,407,062 + HGI48_RS06645 0.83 +0.5
1,407,063 - HGI48_RS06645 0.83 -0.1
1,407,112 + HGI48_RS06645 0.89 -1.4
1,407,112 + HGI48_RS06645 0.89 -0.5
1,407,113 - HGI48_RS06645 0.90 -0.1
1,407,113 - HGI48_RS06645 0.90 +0.1
1,407,229 + -1.9
1,407,230 - +0.1
1,407,230 - -0.9
1,407,278 + -0.2
1,407,279 - +0.2
1,407,297 - -0.2
1,407,326 + -1.4
1,407,326 + -2.5
1,407,326 + +0.6
1,407,326 + -0.3
1,407,326 + +0.2
1,407,327 - -0.9
1,407,327 - -0.4
1,407,332 - +0.5
1,407,393 - +1.4
1,407,472 - +3.0
1,407,472 - HGI48_RS06650 0.53 -1.4
1,407,472 - HGI48_RS06650 0.53 -0.4
1,407,487 + HGI48_RS06650 0.63 +1.4
1,407,487 + HGI48_RS06650 0.63 -0.4
1,407,487 + HGI48_RS06650 0.63 -1.7
1,407,487 + HGI48_RS06650 0.63 -2.2
1,407,487 + HGI48_RS06650 0.63 +0.1
1,407,488 - HGI48_RS06650 0.63 +0.1
1,407,488 - HGI48_RS06650 0.63 -1.8
1,407,488 - HGI48_RS06650 0.63 -0.1
1,407,488 - +1.1
1,407,541 - +0.1
1,407,569 + -1.7
1,407,648 + +1.1
1,407,649 - -0.4
1,407,667 - -0.9
1,407,670 + +0.2
1,407,670 + -0.6
1,407,717 - -1.4
1,407,717 - -0.7
1,407,717 - +0.6
1,407,717 - +0.2
1,407,717 - -2.2
1,407,748 + +0.5
1,407,760 + -0.1
1,407,761 - +0.9
1,407,862 + HGI48_RS06655 0.21 +0.1
1,407,862 + HGI48_RS06655 0.21 -0.8
1,407,862 + HGI48_RS06655 0.21 -0.2
1,407,876 - HGI48_RS06655 0.23 -2.4
1,407,962 + HGI48_RS06655 0.34 -0.2
1,407,973 + HGI48_RS06655 0.35 -0.2
1,407,974 - HGI48_RS06655 0.35 +0.3
1,407,974 - HGI48_RS06655 0.35 +0.4
1,407,974 - HGI48_RS06655 0.35 -0.4
1,408,039 + HGI48_RS06655 0.43 -0.4
1,408,040 - HGI48_RS06655 0.44 -1.9
1,408,151 + +1.6
1,408,152 - HGI48_RS06655 0.58 +0.2
1,408,152 - HGI48_RS06655 0.58 -0.2
1,408,152 - HGI48_RS06655 0.58 -2.4
1,408,152 - HGI48_RS06655 0.58 +0.3
1,408,152 - HGI48_RS06655 0.58 +0.6
1,408,152 - -0.9
1,408,152 - HGI48_RS06655 0.58 +0.2
1,408,245 + HGI48_RS06655 0.70 -2.1
1,408,245 + HGI48_RS06655 0.70 +0.9
1,408,246 - HGI48_RS06655 0.70 +0.1
1,408,277 + HGI48_RS06655 0.74 +2.1
1,408,413 - +0.8
1,408,445 - -0.5
1,408,452 - +0.4
1,408,452 - -0.0
1,408,673 - HGI48_RS06660 0.29 -3.2
1,408,740 - HGI48_RS06660 0.39 +0.2
1,408,884 - HGI48_RS06660 0.60 -1.2
1,408,884 - HGI48_RS06660 0.60 +0.0
1,408,916 + HGI48_RS06660 0.65 +1.3
1,408,916 + HGI48_RS06660 0.65 -0.5
1,408,916 + HGI48_RS06660 0.65 -0.9
1,408,917 - HGI48_RS06660 0.65 +0.0
1,408,917 - HGI48_RS06660 0.65 -0.4
1,408,917 - HGI48_RS06660 0.65 +0.6
1,408,930 + HGI48_RS06660 0.67 +0.6
1,409,025 + HGI48_RS06660 0.80 +1.2
1,409,025 + HGI48_RS06660 0.80 +0.2
1,409,025 + HGI48_RS06660 0.80 +0.4
1,409,025 + HGI48_RS06660 0.80 -0.1
1,409,025 + HGI48_RS06660 0.80 +0.4
1,409,025 + HGI48_RS06660 0.80 -1.4
1,409,025 + HGI48_RS06660 0.80 +0.2
1,409,025 + HGI48_RS06660 0.80 -1.1
1,409,025 + +0.6
1,409,025 + HGI48_RS06660 0.80 -0.3
1,409,026 - HGI48_RS06660 0.81 +0.9
1,409,026 - HGI48_RS06660 0.81 +1.4
1,409,026 - HGI48_RS06660 0.81 +1.0
1,409,026 - HGI48_RS06660 0.81 +0.1
1,409,026 - HGI48_RS06660 0.81 +0.3
1,409,026 - HGI48_RS06660 0.81 +0.2
1,409,026 - HGI48_RS06660 0.81 +1.3
1,409,026 - HGI48_RS06660 0.81 -0.7
1,409,026 - HGI48_RS06660 0.81 -0.1
1,409,027 + HGI48_RS06660 0.81 -1.5
1,409,027 + HGI48_RS06660 0.81 +0.9
1,409,028 - HGI48_RS06660 0.81 -0.5
1,409,176 + -0.5
1,409,278 + HGI48_RS06665 0.11 -0.8
1,409,396 + HGI48_RS06665 0.22 +0.9
1,409,397 - HGI48_RS06665 0.22 +0.2

Or see this region's nucleotide sequence