Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04495 and HGI48_RS04500 are separated by 370 nucleotides HGI48_RS04500 and HGI48_RS04505 are separated by 463 nucleotides
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
HGI48_RS04500: HGI48_RS04500 - fumarate hydratase, at 943,443 to 945,086
_RS04500
HGI48_RS04505: HGI48_RS04505 - LysR family transcriptional regulator, at 945,550 to 946,416
_RS04505
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 942.494 kb on - strand, within HGI48_RS04495 at 942.516 kb on + strand, within HGI48_RS04495 at 942.540 kb on + strand, within HGI48_RS04495 at 942.541 kb on - strand, within HGI48_RS04495 at 942.947 kb on + strand at 942.948 kb on - strand at 942.964 kb on + strand at 943.024 kb on - strand at 943.027 kb on + strand at 943.066 kb on - strand at 943.097 kb on + strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.117 kb on + strand at 943.118 kb on - strand at 943.118 kb on - strand at 943.372 kb on + strand at 943.396 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.550 kb on + strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.662 kb on - strand, within HGI48_RS04500 at 943.662 kb on - strand, within HGI48_RS04500 at 943.747 kb on + strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.825 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.829 kb on - strand at 943.849 kb on + strand, within HGI48_RS04500 at 943.850 kb on - strand, within HGI48_RS04500 at 944.011 kb on - strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.209 kb on + strand, within HGI48_RS04500 at 944.210 kb on - strand, within HGI48_RS04500 at 944.210 kb on - strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.329 kb on + strand, within HGI48_RS04500 at 944.330 kb on - strand, within HGI48_RS04500 at 944.332 kb on + strand, within HGI48_RS04500 at 944.332 kb on + strand, within HGI48_RS04500 at 944.333 kb on - strand, within HGI48_RS04500 at 944.455 kb on + strand at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.456 kb on - strand, within HGI48_RS04500 at 944.500 kb on + strand at 944.500 kb on + strand, within HGI48_RS04500 at 944.506 kb on + strand at 944.506 kb on + strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.507 kb on - strand, within HGI48_RS04500 at 944.554 kb on + strand, within HGI48_RS04500 at 944.555 kb on - strand, within HGI48_RS04500 at 944.555 kb on - strand, within HGI48_RS04500 at 944.576 kb on - strand, within HGI48_RS04500 at 944.583 kb on + strand, within HGI48_RS04500 at 944.584 kb on - strand, within HGI48_RS04500 at 944.584 kb on - strand, within HGI48_RS04500 at 944.584 kb on - strand at 944.622 kb on - strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand, within HGI48_RS04500 at 944.623 kb on + strand at 944.623 kb on + strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand, within HGI48_RS04500 at 944.624 kb on - strand at 944.624 kb on - strand, within HGI48_RS04500 at 944.650 kb on + strand, within HGI48_RS04500 at 944.680 kb on + strand, within HGI48_RS04500 at 944.680 kb on + strand, within HGI48_RS04500 at 944.681 kb on - strand at 944.695 kb on - strand, within HGI48_RS04500 at 944.810 kb on + strand at 944.810 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.833 kb on + strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.834 kb on - strand, within HGI48_RS04500 at 944.966 kb on + strand at 944.967 kb on - strand at 944.967 kb on - strand at 944.967 kb on - strand at 944.972 kb on + strand at 945.019 kb on - strand at 945.067 kb on + strand at 945.067 kb on + strand at 945.068 kb on - strand at 945.110 kb on - strand at 945.110 kb on - strand at 945.143 kb on + strand at 945.163 kb on + strand at 945.163 kb on + strand at 945.164 kb on - strand at 945.164 kb on - strand at 945.164 kb on - strand at 945.235 kb on - strand at 945.248 kb on + strand at 945.248 kb on + strand at 945.299 kb on + strand at 945.300 kb on - strand at 945.300 kb on - strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.302 kb on + strand at 945.303 kb on - strand at 945.303 kb on - strand at 945.303 kb on - strand at 945.322 kb on + strand at 945.323 kb on - strand at 945.344 kb on - strand at 945.375 kb on + strand at 945.375 kb on + strand at 945.375 kb on + strand at 945.376 kb on - strand at 945.377 kb on + strand at 945.378 kb on - strand at 945.399 kb on + strand at 945.399 kb on + strand at 945.400 kb on - strand at 945.435 kb on + strand at 945.435 kb on + strand at 945.458 kb on - strand at 945.488 kb on + strand at 945.492 kb on + strand at 945.493 kb on - strand at 945.496 kb on + strand at 945.503 kb on + strand at 945.503 kb on + strand at 945.504 kb on - strand at 945.551 kb on + strand at 945.689 kb on + strand, within HGI48_RS04505 at 945.690 kb on - strand, within HGI48_RS04505 at 945.718 kb on - strand, within HGI48_RS04505 at 945.761 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.816 kb on - strand, within HGI48_RS04505 at 945.816 kb on - strand at 945.902 kb on + strand, within HGI48_RS04505 at 945.903 kb on - strand, within HGI48_RS04505 at 945.903 kb on - strand at 945.903 kb on - strand at 945.952 kb on - strand, within HGI48_RS04505 at 946.013 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 942,494 - HGI48_RS04495 0.62 +0.2 942,516 + HGI48_RS04495 0.64 -2.2 942,540 + HGI48_RS04495 0.65 -0.5 942,541 - HGI48_RS04495 0.65 -0.4 942,947 + +0.4 942,948 - -2.2 942,964 + -0.8 943,024 - -0.5 943,027 + +0.9 943,066 - -1.0 943,097 + +0.4 943,098 - +2.3 943,098 - -0.8 943,098 - +1.3 943,117 + -0.8 943,118 - -0.0 943,118 - +0.8 943,372 + -0.8 943,396 - +0.2 943,401 + +1.6 943,401 + +0.0 943,418 + -1.6 943,418 + +0.5 943,418 + -0.6 943,418 + -0.4 943,419 - +0.3 943,419 - +0.3 943,419 - -1.6 943,419 - -0.5 943,419 - -0.4 943,550 + -1.0 943,551 - -0.6 943,551 - -2.9 943,551 - -0.2 943,551 - -1.5 943,551 - -0.8 943,662 - HGI48_RS04500 0.13 +0.1 943,662 - HGI48_RS04500 0.13 -0.8 943,747 + HGI48_RS04500 0.18 +0.8 943,748 - HGI48_RS04500 0.19 -1.2 943,748 - HGI48_RS04500 0.19 -1.8 943,748 - HGI48_RS04500 0.19 -0.4 943,825 + HGI48_RS04500 0.23 +0.2 943,828 + HGI48_RS04500 0.23 -1.2 943,828 + HGI48_RS04500 0.23 -1.8 943,829 - +1.8 943,849 + HGI48_RS04500 0.25 -1.0 943,850 - HGI48_RS04500 0.25 +0.2 944,011 - HGI48_RS04500 0.35 +0.4 944,053 + -0.2 944,053 + HGI48_RS04500 0.37 +0.2 944,053 + -0.8 944,053 + HGI48_RS04500 0.37 +1.2 944,054 - HGI48_RS04500 0.37 +0.4 944,054 - HGI48_RS04500 0.37 -0.1 944,054 - HGI48_RS04500 0.37 +0.2 944,209 + HGI48_RS04500 0.47 +0.0 944,210 - HGI48_RS04500 0.47 -0.0 944,210 - HGI48_RS04500 0.47 -0.1 944,329 + HGI48_RS04500 0.54 -2.0 944,329 + HGI48_RS04500 0.54 -0.5 944,329 + HGI48_RS04500 0.54 -1.0 944,329 + HGI48_RS04500 0.54 -0.1 944,330 - HGI48_RS04500 0.54 +0.3 944,332 + HGI48_RS04500 0.54 +1.6 944,332 + HGI48_RS04500 0.54 -0.2 944,333 - HGI48_RS04500 0.54 -2.0 944,455 + +2.3 944,456 - HGI48_RS04500 0.62 -1.1 944,456 - HGI48_RS04500 0.62 +0.5 944,456 - HGI48_RS04500 0.62 +0.0 944,456 - HGI48_RS04500 0.62 +1.6 944,500 + +0.2 944,500 + HGI48_RS04500 0.64 -0.0 944,506 + +0.8 944,506 + HGI48_RS04500 0.65 -0.7 944,507 - HGI48_RS04500 0.65 +0.3 944,507 - HGI48_RS04500 0.65 -0.6 944,507 - HGI48_RS04500 0.65 -1.9 944,507 - HGI48_RS04500 0.65 -0.6 944,507 - HGI48_RS04500 0.65 +1.2 944,554 + HGI48_RS04500 0.68 +0.5 944,555 - HGI48_RS04500 0.68 +1.1 944,555 - HGI48_RS04500 0.68 -0.0 944,576 - HGI48_RS04500 0.69 +0.1 944,583 + HGI48_RS04500 0.69 -1.9 944,584 - HGI48_RS04500 0.69 -2.7 944,584 - HGI48_RS04500 0.69 -0.4 944,584 - +0.2 944,622 - HGI48_RS04500 0.72 -2.4 944,623 + HGI48_RS04500 0.72 +0.2 944,623 + HGI48_RS04500 0.72 +0.8 944,623 + +0.2 944,623 + HGI48_RS04500 0.72 +1.6 944,623 + HGI48_RS04500 0.72 -1.6 944,623 + HGI48_RS04500 0.72 -0.2 944,623 + HGI48_RS04500 0.72 +0.8 944,623 + HGI48_RS04500 0.72 +2.4 944,623 + HGI48_RS04500 0.72 -1.0 944,623 + +4.5 944,623 + HGI48_RS04500 0.72 +1.0 944,624 - HGI48_RS04500 0.72 +0.3 944,624 - HGI48_RS04500 0.72 -0.3 944,624 - HGI48_RS04500 0.72 -1.7 944,624 - HGI48_RS04500 0.72 -0.8 944,624 - HGI48_RS04500 0.72 +1.7 944,624 - +1.5 944,624 - HGI48_RS04500 0.72 -1.2 944,624 - HGI48_RS04500 0.72 +0.8 944,624 - HGI48_RS04500 0.72 +0.4 944,624 - +1.3 944,624 - HGI48_RS04500 0.72 +1.6 944,650 + HGI48_RS04500 0.73 -0.2 944,680 + HGI48_RS04500 0.75 -0.4 944,680 + HGI48_RS04500 0.75 +0.4 944,681 - +2.8 944,695 - HGI48_RS04500 0.76 +1.7 944,810 + +2.6 944,810 + HGI48_RS04500 0.83 -0.0 944,833 + HGI48_RS04500 0.85 -1.1 944,833 + HGI48_RS04500 0.85 +0.8 944,833 + HGI48_RS04500 0.85 -0.7 944,834 - HGI48_RS04500 0.85 +0.5 944,834 - HGI48_RS04500 0.85 +1.7 944,834 - HGI48_RS04500 0.85 -0.2 944,966 + +0.3 944,967 - -0.5 944,967 - -1.2 944,967 - -0.4 944,972 + +2.3 945,019 - -1.4 945,067 + -2.2 945,067 + +0.5 945,068 - +0.5 945,110 - +0.3 945,110 - -0.8 945,143 + +0.2 945,163 + -0.2 945,163 + +1.4 945,164 - -2.4 945,164 - +0.2 945,164 - -0.8 945,235 - +0.8 945,248 + +0.2 945,248 + +0.5 945,299 + -0.6 945,300 - +0.4 945,300 - -0.8 945,302 + -0.0 945,302 + -0.2 945,302 + +0.1 945,302 + -0.1 945,302 + -1.7 945,303 - +0.8 945,303 - -0.5 945,303 - -1.2 945,322 + -1.0 945,323 - +0.2 945,344 - -0.0 945,375 + +0.1 945,375 + +0.6 945,375 + -1.8 945,376 - -0.8 945,377 + -1.1 945,378 - +0.9 945,399 + +0.8 945,399 + -1.8 945,400 - -0.2 945,435 + +0.3 945,435 + -0.0 945,458 - +0.0 945,488 + -1.0 945,492 + -0.1 945,493 - -1.6 945,496 + +0.5 945,503 + +0.3 945,503 + +0.3 945,504 - +1.8 945,551 + -1.6 945,689 + HGI48_RS04505 0.16 +0.6 945,690 - HGI48_RS04505 0.16 -1.8 945,718 - HGI48_RS04505 0.19 +0.8 945,761 + -0.8 945,815 + HGI48_RS04505 0.31 +1.0 945,815 + HGI48_RS04505 0.31 +0.5 945,815 + +0.2 945,815 + HGI48_RS04505 0.31 -2.7 945,816 - HGI48_RS04505 0.31 +1.0 945,816 - +0.2 945,902 + HGI48_RS04505 0.41 -2.0 945,903 - HGI48_RS04505 0.41 +0.2 945,903 - +0.8 945,903 - -0.2 945,952 - HGI48_RS04505 0.46 -0.2 946,013 - HGI48_RS04505 0.53 +0.1 946,082 - HGI48_RS04505 0.61 -1.0 946,082 - HGI48_RS04505 0.61 +0.1
Or see this region's nucleotide sequence