Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03575

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03570 and HGI48_RS03575 overlap by 4 nucleotidesHGI48_RS03575 and HGI48_RS03580 are separated by 120 nucleotides HGI48_RS03570: HGI48_RS03570 - cation/acetate symporter ActP, at 754,000 to 755,658 _RS03570 HGI48_RS03575: HGI48_RS03575 - DUF485 domain-containing protein, at 755,655 to 755,966 _RS03575 HGI48_RS03580: HGI48_RS03580 - acetate--CoA ligase, at 756,087 to 758,048 _RS03580 Position (kb) 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 754.665 kb on + strand, within HGI48_RS03570at 754.665 kb on + strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.666 kb on - strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.727 kb on + strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.728 kb on - strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.733 kb on + strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.734 kb on - strand, within HGI48_RS03570at 754.908 kb on + strandat 754.909 kb on - strand, within HGI48_RS03570at 755.069 kb on + strandat 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.069 kb on + strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.070 kb on - strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strandat 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.111 kb on + strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.112 kb on - strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.171 kb on + strand, within HGI48_RS03570at 755.172 kb on - strand, within HGI48_RS03570at 755.172 kb on - strand, within HGI48_RS03570at 755.211 kb on + strand, within HGI48_RS03570at 755.231 kb on - strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.245 kb on + strand, within HGI48_RS03570at 755.246 kb on - strand, within HGI48_RS03570at 755.337 kb on - strand, within HGI48_RS03570at 755.337 kb on - strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.363 kb on + strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.364 kb on - strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.405 kb on + strand, within HGI48_RS03570at 755.406 kb on - strand, within HGI48_RS03570at 755.406 kb on - strand, within HGI48_RS03570at 755.462 kb on + strandat 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.462 kb on + strand, within HGI48_RS03570at 755.463 kb on - strand, within HGI48_RS03570at 755.463 kb on - strandat 755.463 kb on - strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.465 kb on + strand, within HGI48_RS03570at 755.501 kb on + strandat 755.502 kb on - strandat 755.502 kb on - strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.510 kb on + strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.511 kb on - strandat 755.556 kb on + strandat 755.556 kb on + strandat 755.557 kb on - strandat 755.722 kb on + strandat 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strandat 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.722 kb on + strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strandat 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strandat 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.723 kb on - strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.726 kb on + strand, within HGI48_RS03575at 755.727 kb on - strand, within HGI48_RS03575at 755.857 kb on + strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.858 kb on - strand, within HGI48_RS03575at 755.921 kb on + strand, within HGI48_RS03575at 755.921 kb on + strand, within HGI48_RS03575at 755.922 kb on - strand, within HGI48_RS03575at 755.922 kb on - strand, within HGI48_RS03575at 755.925 kb on + strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.926 kb on - strand, within HGI48_RS03575at 755.969 kb on + strandat 755.970 kb on - strandat 755.985 kb on + strandat 755.985 kb on + strandat 755.986 kb on - strandat 755.986 kb on - strandat 755.986 kb on - strandat 756.164 kb on + strandat 756.209 kb on + strandat 756.323 kb on - strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.364 kb on + strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.365 kb on - strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.370 kb on + strand, within HGI48_RS03580at 756.371 kb on - strand, within HGI48_RS03580at 756.371 kb on - strandat 756.520 kb on + strand, within HGI48_RS03580at 756.521 kb on - strand, within HGI48_RS03580at 756.523 kb on + strand, within HGI48_RS03580at 756.523 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.562 kb on + strand, within HGI48_RS03580at 756.563 kb on - strand, within HGI48_RS03580at 756.563 kb on - strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.586 kb on + strand, within HGI48_RS03580at 756.587 kb on - strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.623 kb on + strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.624 kb on - strand, within HGI48_RS03580at 756.718 kb on - strand, within HGI48_RS03580at 756.718 kb on - strand, within HGI48_RS03580at 756.815 kb on + strand, within HGI48_RS03580at 756.856 kb on + strand, within HGI48_RS03580at 756.857 kb on - strand, within HGI48_RS03580

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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754,665 + HGI48_RS03570 0.40 -0.5
754,665 + HGI48_RS03570 0.40 +0.6
754,666 - HGI48_RS03570 0.40 +0.5
754,666 - HGI48_RS03570 0.40 -0.2
754,666 - HGI48_RS03570 0.40 -0.0
754,666 - HGI48_RS03570 0.40 -0.7
754,666 - HGI48_RS03570 0.40 -0.2
754,666 - HGI48_RS03570 0.40 -1.3
754,666 - HGI48_RS03570 0.40 -0.6
754,666 - HGI48_RS03570 0.40 -0.4
754,666 - HGI48_RS03570 0.40 +0.1
754,666 - HGI48_RS03570 0.40 +0.5
754,666 - HGI48_RS03570 0.40 -0.1
754,727 + HGI48_RS03570 0.44 -0.4
754,727 + HGI48_RS03570 0.44 -0.4
754,728 - HGI48_RS03570 0.44 +0.1
754,728 - HGI48_RS03570 0.44 +0.0
754,728 - HGI48_RS03570 0.44 +1.4
754,733 + HGI48_RS03570 0.44 +0.8
754,733 + HGI48_RS03570 0.44 -0.3
754,734 - HGI48_RS03570 0.44 -1.8
754,734 - HGI48_RS03570 0.44 +1.2
754,734 - HGI48_RS03570 0.44 +0.4
754,734 - HGI48_RS03570 0.44 -2.2
754,908 + +1.2
754,909 - HGI48_RS03570 0.55 +1.9
755,069 + +2.4
755,069 + HGI48_RS03570 0.64 +1.2
755,069 + HGI48_RS03570 0.64 -0.5
755,069 + HGI48_RS03570 0.64 -0.1
755,069 + HGI48_RS03570 0.64 +1.2
755,069 + HGI48_RS03570 0.64 +0.5
755,069 + HGI48_RS03570 0.64 -0.2
755,070 - HGI48_RS03570 0.64 -1.9
755,070 - HGI48_RS03570 0.64 -1.2
755,070 - HGI48_RS03570 0.64 +0.6
755,070 - HGI48_RS03570 0.64 +0.3
755,070 - HGI48_RS03570 0.64 -1.6
755,070 - HGI48_RS03570 0.64 +0.0
755,070 - HGI48_RS03570 0.64 +0.4
755,070 - HGI48_RS03570 0.64 +1.0
755,070 - HGI48_RS03570 0.64 +0.3
755,070 - HGI48_RS03570 0.64 -1.0
755,070 - HGI48_RS03570 0.64 +0.6
755,070 - HGI48_RS03570 0.64 +0.8
755,111 + HGI48_RS03570 0.67 +1.2
755,111 + -0.8
755,111 + HGI48_RS03570 0.67 -1.8
755,111 + HGI48_RS03570 0.67 +2.2
755,111 + HGI48_RS03570 0.67 -1.2
755,111 + HGI48_RS03570 0.67 -1.0
755,111 + HGI48_RS03570 0.67 -0.1
755,111 + HGI48_RS03570 0.67 +0.3
755,111 + HGI48_RS03570 0.67 +1.2
755,112 - HGI48_RS03570 0.67 -1.3
755,112 - HGI48_RS03570 0.67 -1.3
755,112 - HGI48_RS03570 0.67 +0.5
755,112 - HGI48_RS03570 0.67 +0.3
755,112 - HGI48_RS03570 0.67 +0.6
755,171 + HGI48_RS03570 0.71 +0.5
755,171 + HGI48_RS03570 0.71 -0.2
755,171 + HGI48_RS03570 0.71 -1.2
755,172 - HGI48_RS03570 0.71 +0.2
755,172 - HGI48_RS03570 0.71 -0.3
755,211 + HGI48_RS03570 0.73 +0.1
755,231 - HGI48_RS03570 0.74 -1.5
755,245 + HGI48_RS03570 0.75 -0.6
755,245 + HGI48_RS03570 0.75 -0.4
755,245 + HGI48_RS03570 0.75 +1.6
755,246 - HGI48_RS03570 0.75 +0.6
755,337 - HGI48_RS03570 0.81 -1.2
755,337 - HGI48_RS03570 0.81 -1.2
755,363 + HGI48_RS03570 0.82 +0.3
755,363 + HGI48_RS03570 0.82 +0.8
755,363 + HGI48_RS03570 0.82 +0.8
755,363 + HGI48_RS03570 0.82 +0.7
755,363 + HGI48_RS03570 0.82 -2.3
755,363 + HGI48_RS03570 0.82 +0.4
755,364 - HGI48_RS03570 0.82 -0.7
755,364 - HGI48_RS03570 0.82 +0.8
755,364 - HGI48_RS03570 0.82 -0.5
755,405 + HGI48_RS03570 0.85 +0.4
755,405 + HGI48_RS03570 0.85 -0.6
755,405 + HGI48_RS03570 0.85 +0.7
755,405 + HGI48_RS03570 0.85 -1.5
755,405 + HGI48_RS03570 0.85 +0.1
755,406 - HGI48_RS03570 0.85 -0.5
755,406 - HGI48_RS03570 0.85 -0.1
755,462 + +0.3
755,462 + HGI48_RS03570 0.88 -0.4
755,462 + HGI48_RS03570 0.88 -0.7
755,462 + HGI48_RS03570 0.88 -0.2
755,462 + HGI48_RS03570 0.88 -1.3
755,462 + HGI48_RS03570 0.88 +0.3
755,463 - HGI48_RS03570 0.88 +0.7
755,463 - -0.2
755,463 - HGI48_RS03570 0.88 -0.6
755,465 + HGI48_RS03570 0.88 +0.1
755,465 + HGI48_RS03570 0.88 +0.4
755,465 + HGI48_RS03570 0.88 -1.2
755,501 + +0.5
755,502 - +0.3
755,502 - -1.2
755,510 + -2.2
755,510 + +2.1
755,510 + +0.4
755,510 + +0.5
755,510 + +0.8
755,510 + -0.0
755,511 - -1.2
755,511 - -1.2
755,511 - -0.9
755,511 - -1.2
755,511 - +1.0
755,511 - -1.5
755,511 - +0.2
755,511 - -1.3
755,511 - +0.3
755,556 + -0.4
755,556 + -0.4
755,557 - -0.3
755,722 + +0.3
755,722 + HGI48_RS03575 0.21 +0.8
755,722 + HGI48_RS03575 0.21 -0.5
755,722 + HGI48_RS03575 0.21 +0.4
755,722 + HGI48_RS03575 0.21 +0.4
755,722 + +0.3
755,722 + HGI48_RS03575 0.21 +0.4
755,722 + HGI48_RS03575 0.21 -0.7
755,722 + HGI48_RS03575 0.21 +0.8
755,722 + HGI48_RS03575 0.21 +0.3
755,722 + HGI48_RS03575 0.21 +1.1
755,722 + HGI48_RS03575 0.21 -0.0
755,722 + HGI48_RS03575 0.21 -0.6
755,722 + HGI48_RS03575 0.21 -2.6
755,722 + HGI48_RS03575 0.21 -0.9
755,722 + HGI48_RS03575 0.21 +0.4
755,723 - HGI48_RS03575 0.22 -0.0
755,723 - +1.3
755,723 - HGI48_RS03575 0.22 +0.3
755,723 - HGI48_RS03575 0.22 +0.1
755,723 - HGI48_RS03575 0.22 -0.2
755,723 - +0.8
755,723 - HGI48_RS03575 0.22 +0.4
755,723 - HGI48_RS03575 0.22 +0.7
755,723 - HGI48_RS03575 0.22 -0.2
755,723 - HGI48_RS03575 0.22 -1.2
755,723 - HGI48_RS03575 0.22 +0.3
755,723 - HGI48_RS03575 0.22 +0.0
755,723 - HGI48_RS03575 0.22 -1.0
755,723 - HGI48_RS03575 0.22 -1.4
755,723 - HGI48_RS03575 0.22 +0.0
755,726 + HGI48_RS03575 0.23 -1.3
755,726 + HGI48_RS03575 0.23 -0.3
755,726 + HGI48_RS03575 0.23 +1.2
755,727 - HGI48_RS03575 0.23 -0.7
755,857 + HGI48_RS03575 0.65 -1.5
755,858 - HGI48_RS03575 0.65 -1.3
755,858 - HGI48_RS03575 0.65 -1.7
755,858 - HGI48_RS03575 0.65 -0.7
755,858 - HGI48_RS03575 0.65 +1.6
755,921 + HGI48_RS03575 0.85 +0.8
755,921 + HGI48_RS03575 0.85 -1.0
755,922 - HGI48_RS03575 0.86 +0.4
755,922 - HGI48_RS03575 0.86 +0.8
755,925 + HGI48_RS03575 0.87 +0.6
755,926 - HGI48_RS03575 0.87 -0.5
755,926 - HGI48_RS03575 0.87 +0.0
755,926 - HGI48_RS03575 0.87 +0.4
755,969 + +0.8
755,970 - +0.4
755,985 + +0.1
755,985 + +0.8
755,986 - +0.2
755,986 - -0.2
755,986 - -1.2
756,164 + +1.3
756,209 + +0.2
756,323 - HGI48_RS03580 0.12 +0.9
756,364 + HGI48_RS03580 0.14 +0.0
756,364 + HGI48_RS03580 0.14 -1.2
756,364 + HGI48_RS03580 0.14 +0.3
756,364 + HGI48_RS03580 0.14 -1.3
756,365 - HGI48_RS03580 0.14 -2.7
756,365 - HGI48_RS03580 0.14 -0.2
756,365 - HGI48_RS03580 0.14 -0.2
756,365 - HGI48_RS03580 0.14 -0.6
756,365 - HGI48_RS03580 0.14 +0.8
756,370 + HGI48_RS03580 0.14 -0.4
756,370 + HGI48_RS03580 0.14 +1.3
756,370 + HGI48_RS03580 0.14 -0.5
756,371 - HGI48_RS03580 0.14 -1.0
756,371 - +1.3
756,520 + HGI48_RS03580 0.22 -0.3
756,521 - HGI48_RS03580 0.22 -0.2
756,523 + HGI48_RS03580 0.22 +1.2
756,523 + HGI48_RS03580 0.22 +0.1
756,562 + HGI48_RS03580 0.24 -0.9
756,562 + HGI48_RS03580 0.24 -0.2
756,562 + HGI48_RS03580 0.24 -2.0
756,563 - HGI48_RS03580 0.24 +0.8
756,563 - HGI48_RS03580 0.24 -2.3
756,586 + HGI48_RS03580 0.25 -1.5
756,586 + HGI48_RS03580 0.25 -0.0
756,586 + HGI48_RS03580 0.25 +2.2
756,586 + HGI48_RS03580 0.25 +1.0
756,586 + HGI48_RS03580 0.25 +1.3
756,587 - HGI48_RS03580 0.25 +0.1
756,623 + HGI48_RS03580 0.27 -0.8
756,623 + HGI48_RS03580 0.27 -0.8
756,623 + HGI48_RS03580 0.27 -1.6
756,623 + HGI48_RS03580 0.27 -1.3
756,624 - HGI48_RS03580 0.27 -1.0
756,624 - HGI48_RS03580 0.27 +0.5
756,624 - HGI48_RS03580 0.27 -1.2
756,624 - HGI48_RS03580 0.27 +0.8
756,624 - HGI48_RS03580 0.27 -0.5
756,624 - HGI48_RS03580 0.27 -0.8
756,624 - HGI48_RS03580 0.27 -0.9
756,624 - HGI48_RS03580 0.27 +0.1
756,718 - HGI48_RS03580 0.32 -0.9
756,718 - HGI48_RS03580 0.32 -0.3
756,815 + HGI48_RS03580 0.37 +0.8
756,856 + HGI48_RS03580 0.39 -1.1
756,857 - HGI48_RS03580 0.39 -0.9

Or see this region's nucleotide sequence