Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02505 and HGI48_RS02510 are separated by 79 nucleotides HGI48_RS02510 and HGI48_RS02515 are separated by 163 nucleotides HGI48_RS02515 and HGI48_RS02520 are separated by 4 nucleotides
HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014
_RS02505
HGI48_RS02510: HGI48_RS02510 - GntR family transcriptional regulator, at 542,094 to 542,792
_RS02510
HGI48_RS02515: HGI48_RS02515 - DUF2848 domain-containing protein, at 542,956 to 543,648
_RS02515
HGI48_RS02520: HGI48_RS02520 - amidase, at 543,653 to 545,020
_RS02520
Position (kb) 542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 542.013 kb on - strand at 542.130 kb on - strand at 542.163 kb on - strand at 542.297 kb on + strand, within HGI48_RS02510 at 542.297 kb on + strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.360 kb on + strand, within HGI48_RS02510 at 542.360 kb on + strand at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.460 kb on + strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.461 kb on - strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.496 kb on + strand, within HGI48_RS02510 at 542.496 kb on + strand at 542.538 kb on - strand, within HGI48_RS02510 at 542.538 kb on - strand, within HGI48_RS02510 at 542.567 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand at 542.613 kb on + strand, within HGI48_RS02510 at 542.645 kb on - strand, within HGI48_RS02510 at 542.658 kb on - strand, within HGI48_RS02510 at 542.660 kb on - strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand at 542.790 kb on + strand at 542.790 kb on + strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.792 kb on + strand at 542.793 kb on - strand at 542.804 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.833 kb on - strand at 542.833 kb on - strand at 542.845 kb on + strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.861 kb on - strand at 542.941 kb on - strand at 542.955 kb on + strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.976 kb on - strand at 543.072 kb on + strand at 543.073 kb on - strand, within HGI48_RS02515 at 543.073 kb on - strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.108 kb on + strand, within HGI48_RS02515 at 543.109 kb on - strand, within HGI48_RS02515 at 543.109 kb on - strand, within HGI48_RS02515 at 543.186 kb on + strand at 543.186 kb on + strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.187 kb on - strand, within HGI48_RS02515 at 543.209 kb on + strand, within HGI48_RS02515 at 543.210 kb on - strand, within HGI48_RS02515 at 543.210 kb on - strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.235 kb on + strand, within HGI48_RS02515 at 543.236 kb on - strand, within HGI48_RS02515 at 543.236 kb on - strand at 543.415 kb on + strand, within HGI48_RS02515 at 543.416 kb on - strand, within HGI48_RS02515 at 543.416 kb on - strand, within HGI48_RS02515 at 543.440 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand, within HGI48_RS02515 at 543.469 kb on + strand at 543.469 kb on + strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand, within HGI48_RS02515 at 543.470 kb on - strand at 543.616 kb on + strand at 543.616 kb on + strand at 543.639 kb on - strand at 543.687 kb on + strand at 543.687 kb on + strand at 543.688 kb on - strand at 543.688 kb on - strand at 543.757 kb on + strand at 543.758 kb on - strand at 543.803 kb on + strand, within HGI48_RS02520 at 543.804 kb on - strand, within HGI48_RS02520 at 543.804 kb on - strand, within HGI48_RS02520 at 544.036 kb on + strand, within HGI48_RS02520 at 544.037 kb on - strand, within HGI48_RS02520 at 544.053 kb on - strand, within HGI48_RS02520 at 544.079 kb on + strand, within HGI48_RS02520 at 544.080 kb on - strand, within HGI48_RS02520 at 544.080 kb on - strand at 544.175 kb on + strand, within HGI48_RS02520 at 544.176 kb on - strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.209 kb on + strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.210 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand, within HGI48_RS02520 at 544.214 kb on - strand at 544.214 kb on - strand, within HGI48_RS02520 at 544.446 kb on + strand, within HGI48_RS02520 at 544.446 kb on + strand, within HGI48_RS02520 at 544.447 kb on - strand, within HGI48_RS02520 at 544.477 kb on + strand, within HGI48_RS02520 at 544.477 kb on + strand, within HGI48_RS02520 at 544.478 kb on - strand, within HGI48_RS02520 at 544.631 kb on + strand at 544.631 kb on + strand, within HGI48_RS02520 at 544.631 kb on + strand, within HGI48_RS02520 at 544.631 kb on + strand, within HGI48_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 542,013 - -0.5 542,130 - +0.3 542,163 - +1.4 542,297 + HGI48_RS02510 0.29 +1.5 542,297 + HGI48_RS02510 0.29 +0.5 542,298 - HGI48_RS02510 0.29 -1.4 542,298 - HGI48_RS02510 0.29 -2.2 542,298 - HGI48_RS02510 0.29 +0.2 542,360 + HGI48_RS02510 0.38 +1.2 542,360 + +0.3 542,361 - HGI48_RS02510 0.38 -0.5 542,361 - HGI48_RS02510 0.38 +0.2 542,361 - HGI48_RS02510 0.38 +0.3 542,361 - HGI48_RS02510 0.38 -0.4 542,460 + -0.7 542,461 - HGI48_RS02510 0.53 -2.4 542,461 - -0.7 542,461 - HGI48_RS02510 0.53 +1.7 542,496 + HGI48_RS02510 0.58 +0.9 542,496 + -0.1 542,538 - HGI48_RS02510 0.64 +0.2 542,538 - HGI48_RS02510 0.64 +0.6 542,567 + HGI48_RS02510 0.68 -0.0 542,580 + HGI48_RS02510 0.70 -0.3 542,580 + HGI48_RS02510 0.70 -1.0 542,580 + HGI48_RS02510 0.70 +0.2 542,580 + HGI48_RS02510 0.70 -0.2 542,580 + +1.6 542,581 - HGI48_RS02510 0.70 -1.0 542,581 - HGI48_RS02510 0.70 -2.1 542,581 - -0.7 542,613 + HGI48_RS02510 0.74 +0.7 542,645 - HGI48_RS02510 0.79 -0.7 542,658 - HGI48_RS02510 0.81 +0.2 542,660 - HGI48_RS02510 0.81 -2.1 542,695 + HGI48_RS02510 0.86 -0.1 542,695 + HGI48_RS02510 0.86 -0.1 542,695 + +1.6 542,696 - HGI48_RS02510 0.86 +1.2 542,696 - HGI48_RS02510 0.86 +0.9 542,696 - +0.3 542,790 + -0.5 542,790 + +1.5 542,791 - +0.9 542,791 - -1.4 542,791 - -0.3 542,791 - -2.3 542,791 - -0.0 542,791 - +3.7 542,792 + -1.4 542,793 - -0.1 542,804 + +0.9 542,828 + +0.5 542,828 + +0.6 542,828 + -1.4 542,828 + +1.1 542,829 - -0.0 542,829 - -0.2 542,829 - -1.1 542,829 - -1.1 542,832 + -0.1 542,832 + +0.8 542,832 + +0.3 542,832 + +0.5 542,832 + +1.6 542,832 + +0.6 542,832 + -0.1 542,832 + +1.5 542,832 + -0.4 542,832 + -1.7 542,832 + -1.9 542,833 - -0.1 542,833 - -1.7 542,845 + +0.3 542,846 - -1.0 542,846 - -1.4 542,846 - -2.3 542,849 + +0.5 542,849 + +1.6 542,849 + -0.7 542,849 + +1.4 542,850 - -0.9 542,850 - -0.5 542,850 - -1.8 542,850 - -0.7 542,861 - -0.7 542,941 - -0.4 542,955 + +0.6 542,956 - -1.1 542,956 - +1.3 542,956 - -1.9 542,976 - +0.2 543,072 + +0.3 543,073 - HGI48_RS02515 0.17 +0.3 543,073 - HGI48_RS02515 0.17 -0.9 543,108 + HGI48_RS02515 0.22 -1.4 543,108 + HGI48_RS02515 0.22 -1.1 543,108 + HGI48_RS02515 0.22 -0.1 543,109 - HGI48_RS02515 0.22 -2.2 543,109 - HGI48_RS02515 0.22 -2.1 543,186 + +1.6 543,186 + HGI48_RS02515 0.33 -1.9 543,187 - HGI48_RS02515 0.33 +0.1 543,187 - HGI48_RS02515 0.33 -0.1 543,187 - HGI48_RS02515 0.33 -0.7 543,209 + HGI48_RS02515 0.37 -0.6 543,210 - HGI48_RS02515 0.37 +1.2 543,210 - HGI48_RS02515 0.37 +0.9 543,235 + HGI48_RS02515 0.40 +0.2 543,235 + HGI48_RS02515 0.40 +0.3 543,235 + HGI48_RS02515 0.40 +0.9 543,235 + HGI48_RS02515 0.40 +0.6 543,235 + HGI48_RS02515 0.40 -2.8 543,235 + HGI48_RS02515 0.40 +1.3 543,235 + HGI48_RS02515 0.40 -0.2 543,235 + HGI48_RS02515 0.40 +1.7 543,235 + HGI48_RS02515 0.40 -0.3 543,235 + HGI48_RS02515 0.40 +1.8 543,236 - HGI48_RS02515 0.40 -1.2 543,236 - +0.3 543,415 + HGI48_RS02515 0.66 +0.7 543,416 - HGI48_RS02515 0.66 +0.7 543,416 - HGI48_RS02515 0.66 -1.1 543,440 + HGI48_RS02515 0.70 +0.5 543,469 + HGI48_RS02515 0.74 -0.3 543,469 + HGI48_RS02515 0.74 +1.6 543,469 + HGI48_RS02515 0.74 -1.0 543,469 + +0.9 543,469 + HGI48_RS02515 0.74 +1.7 543,470 - HGI48_RS02515 0.74 -2.1 543,470 - HGI48_RS02515 0.74 +2.0 543,470 - HGI48_RS02515 0.74 +1.0 543,470 - HGI48_RS02515 0.74 -0.1 543,470 - HGI48_RS02515 0.74 -0.1 543,470 - +2.3 543,616 + -0.2 543,616 + +0.5 543,639 - -0.1 543,687 + +0.7 543,687 + -0.7 543,688 - -2.1 543,688 - -1.7 543,757 + +1.2 543,758 - -0.8 543,803 + HGI48_RS02520 0.11 +1.2 543,804 - HGI48_RS02520 0.11 -0.2 543,804 - HGI48_RS02520 0.11 -1.9 544,036 + HGI48_RS02520 0.28 +0.1 544,037 - HGI48_RS02520 0.28 -1.1 544,053 - HGI48_RS02520 0.29 +1.4 544,079 + HGI48_RS02520 0.31 +0.2 544,080 - HGI48_RS02520 0.31 -0.8 544,080 - +2.8 544,175 + HGI48_RS02520 0.38 +1.2 544,176 - HGI48_RS02520 0.38 -1.4 544,209 + HGI48_RS02520 0.41 -0.2 544,209 + HGI48_RS02520 0.41 -1.1 544,209 + HGI48_RS02520 0.41 -0.4 544,210 - HGI48_RS02520 0.41 -0.4 544,210 - HGI48_RS02520 0.41 +0.9 544,210 - HGI48_RS02520 0.41 -1.9 544,214 - HGI48_RS02520 0.41 -0.4 544,214 - HGI48_RS02520 0.41 +0.8 544,214 - +3.5 544,214 - HGI48_RS02520 0.41 +0.6 544,446 + HGI48_RS02520 0.58 +0.6 544,446 + HGI48_RS02520 0.58 +1.6 544,447 - HGI48_RS02520 0.58 -1.3 544,477 + HGI48_RS02520 0.60 -0.8 544,477 + HGI48_RS02520 0.60 +1.3 544,478 - HGI48_RS02520 0.60 -0.3 544,631 + +0.9 544,631 + HGI48_RS02520 0.71 -0.1 544,631 + HGI48_RS02520 0.71 +2.5 544,631 + HGI48_RS02520 0.71 -0.8
Or see this region's nucleotide sequence