Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00985

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00980 and HGI48_RS00985 overlap by 1 nucleotidesHGI48_RS00985 and HGI48_RS00990 are separated by 41 nucleotides HGI48_RS00980: HGI48_RS00980 - Xaa-Pro dipeptidase, at 222,464 to 223,795 _RS00980 HGI48_RS00985: HGI48_RS00985 - IMPACT family protein, at 223,795 to 224,409 _RS00985 HGI48_RS00990: HGI48_RS00990 - Trk system potassium transporter TrkH, at 224,451 to 225,902 _RS00990 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 222.825 kb on + strand, within HGI48_RS00980at 222.826 kb on - strand, within HGI48_RS00980at 222.845 kb on + strand, within HGI48_RS00980at 222.845 kb on + strand, within HGI48_RS00980at 222.845 kb on + strand, within HGI48_RS00980at 222.846 kb on - strand, within HGI48_RS00980at 222.846 kb on - strand, within HGI48_RS00980at 222.846 kb on - strand, within HGI48_RS00980at 222.846 kb on - strandat 222.846 kb on - strand, within HGI48_RS00980at 222.847 kb on + strandat 222.923 kb on + strand, within HGI48_RS00980at 222.923 kb on + strandat 222.923 kb on + strand, within HGI48_RS00980at 222.923 kb on + strand, within HGI48_RS00980at 222.924 kb on - strand, within HGI48_RS00980at 222.956 kb on + strand, within HGI48_RS00980at 222.957 kb on - strand, within HGI48_RS00980at 223.064 kb on + strand, within HGI48_RS00980at 223.064 kb on + strand, within HGI48_RS00980at 223.065 kb on - strand, within HGI48_RS00980at 223.103 kb on + strand, within HGI48_RS00980at 223.103 kb on + strand, within HGI48_RS00980at 223.103 kb on + strand, within HGI48_RS00980at 223.104 kb on - strand, within HGI48_RS00980at 223.104 kb on - strand, within HGI48_RS00980at 223.112 kb on - strand, within HGI48_RS00980at 223.148 kb on + strand, within HGI48_RS00980at 223.214 kb on + strand, within HGI48_RS00980at 223.214 kb on + strand, within HGI48_RS00980at 223.214 kb on + strand, within HGI48_RS00980at 223.215 kb on - strand, within HGI48_RS00980at 223.215 kb on - strand, within HGI48_RS00980at 223.215 kb on - strand, within HGI48_RS00980at 223.215 kb on - strand, within HGI48_RS00980at 223.247 kb on + strand, within HGI48_RS00980at 223.247 kb on + strand, within HGI48_RS00980at 223.248 kb on - strand, within HGI48_RS00980at 223.248 kb on - strand, within HGI48_RS00980at 223.248 kb on - strand, within HGI48_RS00980at 223.248 kb on - strand, within HGI48_RS00980at 223.271 kb on + strand, within HGI48_RS00980at 223.271 kb on + strand, within HGI48_RS00980at 223.271 kb on + strand, within HGI48_RS00980at 223.271 kb on + strand, within HGI48_RS00980at 223.272 kb on - strand, within HGI48_RS00980at 223.317 kb on + strand, within HGI48_RS00980at 223.317 kb on + strandat 223.318 kb on - strandat 223.318 kb on - strand, within HGI48_RS00980at 223.318 kb on - strand, within HGI48_RS00980at 223.318 kb on - strand, within HGI48_RS00980at 223.318 kb on - strand, within HGI48_RS00980at 223.318 kb on - strand, within HGI48_RS00980at 223.321 kb on + strand, within HGI48_RS00980at 223.321 kb on + strand, within HGI48_RS00980at 223.322 kb on - strand, within HGI48_RS00980at 223.322 kb on - strand, within HGI48_RS00980at 223.322 kb on - strand, within HGI48_RS00980at 223.322 kb on - strand, within HGI48_RS00980at 223.343 kb on + strand, within HGI48_RS00980at 223.346 kb on - strand, within HGI48_RS00980at 223.390 kb on + strand, within HGI48_RS00980at 223.391 kb on - strandat 223.516 kb on + strand, within HGI48_RS00980at 223.516 kb on + strand, within HGI48_RS00980at 223.516 kb on + strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.565 kb on + strandat 223.566 kb on - strand, within HGI48_RS00980at 223.566 kb on - strand, within HGI48_RS00980at 223.576 kb on + strand, within HGI48_RS00980at 223.609 kb on + strandat 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strandat 223.746 kb on + strandat 223.747 kb on - strandat 223.747 kb on - strandat 223.747 kb on - strandat 223.845 kb on + strandat 223.845 kb on + strandat 223.960 kb on + strand, within HGI48_RS00985at 223.960 kb on + strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.098 kb on + strand, within HGI48_RS00985at 224.101 kb on + strand, within HGI48_RS00985at 224.102 kb on - strand, within HGI48_RS00985at 224.102 kb on - strand, within HGI48_RS00985at 224.122 kb on - strand, within HGI48_RS00985at 224.143 kb on + strand, within HGI48_RS00985at 224.144 kb on - strand, within HGI48_RS00985at 224.227 kb on + strand, within HGI48_RS00985at 224.227 kb on + strand, within HGI48_RS00985at 224.294 kb on - strand, within HGI48_RS00985at 224.368 kb on - strandat 224.407 kb on + strandat 224.408 kb on - strandat 224.420 kb on + strandat 224.420 kb on + strandat 224.421 kb on - strandat 224.435 kb on + strandat 224.435 kb on + strandat 224.436 kb on - strandat 224.436 kb on - strandat 224.468 kb on - strandat 224.542 kb on - strandat 224.662 kb on + strand, within HGI48_RS00990at 224.662 kb on + strand, within HGI48_RS00990at 224.967 kb on - strand, within HGI48_RS00990at 225.015 kb on + strand, within HGI48_RS00990at 225.019 kb on + strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.098 kb on + strand, within HGI48_RS00990at 225.099 kb on - strandat 225.099 kb on - strand, within HGI48_RS00990at 225.165 kb on - strand, within HGI48_RS00990at 225.168 kb on - strand, within HGI48_RS00990at 225.174 kb on - strand, within HGI48_RS00990at 225.203 kb on + strandat 225.204 kb on - strand, within HGI48_RS00990at 225.252 kb on + strand, within HGI48_RS00990at 225.282 kb on - strandat 225.342 kb on + strand, within HGI48_RS00990at 225.393 kb on - strand, within HGI48_RS00990

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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222,825 + HGI48_RS00980 0.27 +0.6
222,826 - HGI48_RS00980 0.27 -0.6
222,845 + HGI48_RS00980 0.29 +0.2
222,845 + HGI48_RS00980 0.29 -0.3
222,845 + HGI48_RS00980 0.29 -1.0
222,846 - HGI48_RS00980 0.29 +0.3
222,846 - HGI48_RS00980 0.29 -1.0
222,846 - HGI48_RS00980 0.29 +0.6
222,846 - +1.4
222,846 - HGI48_RS00980 0.29 -0.8
222,847 + +2.0
222,923 + HGI48_RS00980 0.34 -0.6
222,923 + +0.4
222,923 + HGI48_RS00980 0.34 -0.2
222,923 + HGI48_RS00980 0.34 +0.2
222,924 - HGI48_RS00980 0.35 -0.3
222,956 + HGI48_RS00980 0.37 +0.5
222,957 - HGI48_RS00980 0.37 -0.3
223,064 + HGI48_RS00980 0.45 -0.4
223,064 + HGI48_RS00980 0.45 -0.2
223,065 - HGI48_RS00980 0.45 +0.2
223,103 + HGI48_RS00980 0.48 -0.7
223,103 + HGI48_RS00980 0.48 -0.4
223,103 + HGI48_RS00980 0.48 -0.6
223,104 - HGI48_RS00980 0.48 -1.1
223,104 - HGI48_RS00980 0.48 -0.4
223,112 - HGI48_RS00980 0.49 -1.5
223,148 + HGI48_RS00980 0.51 -0.6
223,214 + HGI48_RS00980 0.56 -3.6
223,214 + HGI48_RS00980 0.56 -1.3
223,214 + HGI48_RS00980 0.56 +0.3
223,215 - HGI48_RS00980 0.56 -0.6
223,215 - HGI48_RS00980 0.56 +0.7
223,215 - HGI48_RS00980 0.56 +0.1
223,215 - HGI48_RS00980 0.56 -0.4
223,247 + HGI48_RS00980 0.59 -1.3
223,247 + HGI48_RS00980 0.59 +1.0
223,248 - HGI48_RS00980 0.59 -0.6
223,248 - HGI48_RS00980 0.59 -0.9
223,248 - HGI48_RS00980 0.59 -0.8
223,248 - HGI48_RS00980 0.59 -0.6
223,271 + HGI48_RS00980 0.61 +0.0
223,271 + HGI48_RS00980 0.61 +0.7
223,271 + HGI48_RS00980 0.61 +0.3
223,271 + HGI48_RS00980 0.61 +1.1
223,272 - HGI48_RS00980 0.61 -1.2
223,317 + HGI48_RS00980 0.64 -2.0
223,317 + -0.6
223,318 - +1.4
223,318 - HGI48_RS00980 0.64 +1.0
223,318 - HGI48_RS00980 0.64 -0.3
223,318 - HGI48_RS00980 0.64 -2.3
223,318 - HGI48_RS00980 0.64 -0.2
223,318 - HGI48_RS00980 0.64 -1.6
223,321 + HGI48_RS00980 0.64 +1.2
223,321 + HGI48_RS00980 0.64 -0.2
223,322 - HGI48_RS00980 0.64 +0.2
223,322 - HGI48_RS00980 0.64 -1.2
223,322 - HGI48_RS00980 0.64 -1.6
223,322 - HGI48_RS00980 0.64 -0.8
223,343 + HGI48_RS00980 0.66 -0.1
223,346 - HGI48_RS00980 0.66 -0.2
223,390 + HGI48_RS00980 0.70 -2.0
223,391 - +0.4
223,516 + HGI48_RS00980 0.79 -1.4
223,516 + HGI48_RS00980 0.79 +0.6
223,516 + HGI48_RS00980 0.79 -1.2
223,517 - HGI48_RS00980 0.79 +1.6
223,517 - HGI48_RS00980 0.79 -1.6
223,517 - HGI48_RS00980 0.79 +1.2
223,565 + +1.0
223,566 - HGI48_RS00980 0.83 +0.0
223,566 - HGI48_RS00980 0.83 -1.3
223,576 + HGI48_RS00980 0.83 -0.4
223,609 + -0.6
223,625 + HGI48_RS00980 0.87 +0.4
223,625 + HGI48_RS00980 0.87 +4.1
223,625 + HGI48_RS00980 0.87 +0.2
223,625 + HGI48_RS00980 0.87 -0.4
223,625 + HGI48_RS00980 0.87 +0.1
223,625 + HGI48_RS00980 0.87 -1.0
223,626 - HGI48_RS00980 0.87 +0.0
223,626 - HGI48_RS00980 0.87 +1.1
223,626 - HGI48_RS00980 0.87 +0.6
223,626 - HGI48_RS00980 0.87 -0.7
223,626 - HGI48_RS00980 0.87 +0.3
223,626 - +1.0
223,746 + -0.5
223,747 - -1.8
223,747 - +0.1
223,747 - -0.8
223,845 + -1.1
223,845 + +1.2
223,960 + HGI48_RS00985 0.27 -1.8
223,960 + HGI48_RS00985 0.27 -2.1
223,961 - HGI48_RS00985 0.27 +0.2
223,961 - HGI48_RS00985 0.27 -0.9
223,961 - HGI48_RS00985 0.27 +0.3
223,961 - HGI48_RS00985 0.27 +0.0
223,961 - HGI48_RS00985 0.27 +2.0
223,961 - HGI48_RS00985 0.27 -0.4
224,093 + HGI48_RS00985 0.48 +0.3
224,093 + HGI48_RS00985 0.48 +1.0
224,093 + HGI48_RS00985 0.48 +0.2
224,093 + HGI48_RS00985 0.48 -1.1
224,093 + HGI48_RS00985 0.48 -0.2
224,093 + HGI48_RS00985 0.48 +0.4
224,093 + HGI48_RS00985 0.48 +2.5
224,093 + HGI48_RS00985 0.48 +0.3
224,093 + HGI48_RS00985 0.48 -2.1
224,093 + HGI48_RS00985 0.48 +1.7
224,094 - HGI48_RS00985 0.49 -0.9
224,094 - HGI48_RS00985 0.49 +0.0
224,094 - HGI48_RS00985 0.49 -0.6
224,098 + HGI48_RS00985 0.49 -0.7
224,101 + HGI48_RS00985 0.50 +1.0
224,102 - HGI48_RS00985 0.50 -2.4
224,102 - HGI48_RS00985 0.50 -0.3
224,122 - HGI48_RS00985 0.53 -0.3
224,143 + HGI48_RS00985 0.57 -0.1
224,144 - HGI48_RS00985 0.57 -1.6
224,227 + HGI48_RS00985 0.70 -1.0
224,227 + HGI48_RS00985 0.70 +0.2
224,294 - HGI48_RS00985 0.81 -0.1
224,368 - +1.3
224,407 + +1.2
224,408 - -0.6
224,420 + +0.5
224,420 + -0.2
224,421 - -0.7
224,435 + -0.2
224,435 + -0.3
224,436 - -2.6
224,436 - -0.8
224,468 - +0.0
224,542 - +1.0
224,662 + HGI48_RS00990 0.15 -1.6
224,662 + HGI48_RS00990 0.15 -0.2
224,967 - HGI48_RS00990 0.36 -2.1
225,015 + HGI48_RS00990 0.39 -1.3
225,019 + HGI48_RS00990 0.39 -1.7
225,020 - HGI48_RS00990 0.39 -2.0
225,020 - HGI48_RS00990 0.39 +1.6
225,020 - HGI48_RS00990 0.39 -1.3
225,098 + HGI48_RS00990 0.45 +0.2
225,099 - -0.6
225,099 - HGI48_RS00990 0.45 +0.4
225,165 - HGI48_RS00990 0.49 -1.8
225,168 - HGI48_RS00990 0.49 +0.0
225,174 - HGI48_RS00990 0.50 -1.0
225,203 + +0.0
225,204 - HGI48_RS00990 0.52 -0.4
225,252 + HGI48_RS00990 0.55 -1.0
225,282 - +1.8
225,342 + HGI48_RS00990 0.61 -0.7
225,393 - HGI48_RS00990 0.65 -2.0

Or see this region's nucleotide sequence