Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19700

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19685 and HGI48_RS19690 are separated by 17 nucleotidesHGI48_RS19690 and HGI48_RS19695 overlap by 4 nucleotidesHGI48_RS19695 and HGI48_RS19700 overlap by 1 nucleotidesHGI48_RS19700 and HGI48_RS19705 overlap by 7 nucleotides HGI48_RS19685: HGI48_RS19685 - DNA uptake porin HofQ, at 4,394,931 to 4,396,235 _RS19685 HGI48_RS19690: HGI48_RS19690 - DUF2531 family protein, at 4,396,253 to 4,396,609 _RS19690 HGI48_RS19695: HGI48_RS19695 - hypothetical protein, at 4,396,606 to 4,397,157 _RS19695 HGI48_RS19700: HGI48_RS19700 - PilN domain-containing protein, at 4,397,157 to 4,397,717 _RS19700 HGI48_RS19705: HGI48_RS19705 - pilus assembly protein PilM, at 4,397,711 to 4,398,634 _RS19705 Position (kb) 4397 4398Strain fitness (log2 ratio) -2 -1 0 1 2at 4396.385 kb on - strand, within HGI48_RS19690at 4396.490 kb on + strand, within HGI48_RS19690at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.751 kb on + strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.834 kb on + strand, within HGI48_RS19695at 4396.835 kb on - strand, within HGI48_RS19695at 4397.017 kb on + strand, within HGI48_RS19695at 4397.017 kb on + strand, within HGI48_RS19695at 4397.018 kb on - strand, within HGI48_RS19695at 4397.018 kb on - strand, within HGI48_RS19695at 4397.098 kb on + strand, within HGI48_RS19695at 4397.099 kb on - strand, within HGI48_RS19695at 4397.195 kb on - strandat 4397.195 kb on - strandat 4397.222 kb on + strandat 4397.222 kb on + strand, within HGI48_RS19700at 4397.222 kb on + strand, within HGI48_RS19700at 4397.222 kb on + strand, within HGI48_RS19700at 4397.254 kb on - strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.277 kb on + strand, within HGI48_RS19700at 4397.593 kb on + strand, within HGI48_RS19700at 4397.674 kb on + strandat 4397.676 kb on + strandat 4397.676 kb on + strandat 4397.676 kb on + strandat 4397.676 kb on + strandat 4397.676 kb on + strandat 4397.723 kb on - strandat 4397.854 kb on - strand, within HGI48_RS19705at 4397.896 kb on + strand, within HGI48_RS19705at 4397.897 kb on - strand, within HGI48_RS19705at 4397.911 kb on + strand, within HGI48_RS19705at 4397.912 kb on - strand, within HGI48_RS19705at 4397.912 kb on - strand, within HGI48_RS19705at 4397.919 kb on + strand, within HGI48_RS19705at 4397.920 kb on - strand, within HGI48_RS19705at 4397.920 kb on - strandat 4397.920 kb on - strand, within HGI48_RS19705at 4397.920 kb on - strand, within HGI48_RS19705at 4397.927 kb on + strand, within HGI48_RS19705at 4397.927 kb on + strand, within HGI48_RS19705at 4397.928 kb on - strand, within HGI48_RS19705at 4397.971 kb on + strand, within HGI48_RS19705at 4397.972 kb on - strand, within HGI48_RS19705at 4397.984 kb on - strand, within HGI48_RS19705at 4397.984 kb on - strand, within HGI48_RS19705at 4398.009 kb on + strandat 4398.009 kb on + strand, within HGI48_RS19705at 4398.010 kb on - strand, within HGI48_RS19705at 4398.010 kb on - strand, within HGI48_RS19705at 4398.010 kb on - strand, within HGI48_RS19705at 4398.154 kb on + strand, within HGI48_RS19705at 4398.154 kb on + strand, within HGI48_RS19705at 4398.154 kb on + strand, within HGI48_RS19705at 4398.155 kb on - strand, within HGI48_RS19705at 4398.155 kb on - strand, within HGI48_RS19705at 4398.155 kb on - strand, within HGI48_RS19705at 4398.155 kb on - strandat 4398.155 kb on - strand, within HGI48_RS19705at 4398.157 kb on + strand, within HGI48_RS19705at 4398.158 kb on - strand, within HGI48_RS19705at 4398.158 kb on - strand, within HGI48_RS19705at 4398.248 kb on - strand, within HGI48_RS19705at 4398.248 kb on - strand, within HGI48_RS19705at 4398.332 kb on - strand, within HGI48_RS19705at 4398.332 kb on - strand, within HGI48_RS19705at 4398.333 kb on + strand, within HGI48_RS19705at 4398.333 kb on + strand, within HGI48_RS19705at 4398.334 kb on - strand, within HGI48_RS19705at 4398.334 kb on - strand, within HGI48_RS19705at 4398.334 kb on - strand, within HGI48_RS19705at 4398.466 kb on + strand, within HGI48_RS19705at 4398.467 kb on - strand, within HGI48_RS19705at 4398.488 kb on + strand, within HGI48_RS19705at 4398.488 kb on + strand, within HGI48_RS19705at 4398.488 kb on + strand, within HGI48_RS19705at 4398.488 kb on + strand, within HGI48_RS19705at 4398.488 kb on + strand, within HGI48_RS19705at 4398.489 kb on - strand, within HGI48_RS19705at 4398.489 kb on - strand, within HGI48_RS19705at 4398.489 kb on - strand, within HGI48_RS19705at 4398.489 kb on - strand, within HGI48_RS19705at 4398.489 kb on - strand, within HGI48_RS19705at 4398.504 kb on - strand, within HGI48_RS19705at 4398.569 kb on + strandat 4398.587 kb on - strandat 4398.587 kb on - strandat 4398.587 kb on - strandat 4398.661 kb on + strandat 4398.661 kb on + strandat 4398.680 kb on - strandat 4398.680 kb on - strandat 4398.681 kb on + strandat 4398.701 kb on + strandat 4398.701 kb on + strandat 4398.701 kb on + strandat 4398.702 kb on - strandat 4398.706 kb on + strandat 4398.706 kb on + strandat 4398.706 kb on + strandat 4398.707 kb on - strandat 4398.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,396,385 - HGI48_RS19690 0.37 +1.0
4,396,490 + HGI48_RS19690 0.66 -0.2
4,396,686 + HGI48_RS19695 0.14 -0.4
4,396,686 + HGI48_RS19695 0.14 +0.4
4,396,686 + HGI48_RS19695 0.14 -0.6
4,396,686 + HGI48_RS19695 0.14 -1.0
4,396,686 + HGI48_RS19695 0.14 +0.6
4,396,687 - HGI48_RS19695 0.15 -2.0
4,396,687 - HGI48_RS19695 0.15 -1.3
4,396,687 - HGI48_RS19695 0.15 +0.8
4,396,687 - HGI48_RS19695 0.15 +1.4
4,396,687 - HGI48_RS19695 0.15 +1.6
4,396,687 - HGI48_RS19695 0.15 +0.3
4,396,751 + HGI48_RS19695 0.26 -1.3
4,396,752 - HGI48_RS19695 0.26 +0.0
4,396,752 - HGI48_RS19695 0.26 -0.3
4,396,752 - HGI48_RS19695 0.26 -1.2
4,396,834 + HGI48_RS19695 0.41 +1.6
4,396,835 - HGI48_RS19695 0.41 -0.2
4,397,017 + HGI48_RS19695 0.74 -0.1
4,397,017 + HGI48_RS19695 0.74 -1.0
4,397,018 - HGI48_RS19695 0.75 -0.3
4,397,018 - HGI48_RS19695 0.75 -0.4
4,397,098 + HGI48_RS19695 0.89 -1.8
4,397,099 - HGI48_RS19695 0.89 +1.2
4,397,195 - -0.4
4,397,195 - -0.2
4,397,222 + +2.0
4,397,222 + HGI48_RS19700 0.12 -0.1
4,397,222 + HGI48_RS19700 0.12 -0.3
4,397,222 + HGI48_RS19700 0.12 +0.4
4,397,254 - HGI48_RS19700 0.17 +0.6
4,397,268 + HGI48_RS19700 0.20 -1.0
4,397,268 + HGI48_RS19700 0.20 -0.3
4,397,268 + HGI48_RS19700 0.20 +2.0
4,397,268 + HGI48_RS19700 0.20 -1.6
4,397,277 + HGI48_RS19700 0.21 +0.8
4,397,593 + HGI48_RS19700 0.78 -0.1
4,397,674 + -1.3
4,397,676 + +0.7
4,397,676 + -1.8
4,397,676 + +0.7
4,397,676 + -1.8
4,397,676 + +0.0
4,397,723 - +0.0
4,397,854 - HGI48_RS19705 0.15 -2.3
4,397,896 + HGI48_RS19705 0.20 -0.4
4,397,897 - HGI48_RS19705 0.20 -1.3
4,397,911 + HGI48_RS19705 0.22 +0.0
4,397,912 - HGI48_RS19705 0.22 +0.8
4,397,912 - HGI48_RS19705 0.22 -1.0
4,397,919 + HGI48_RS19705 0.23 +0.6
4,397,920 - HGI48_RS19705 0.23 -0.9
4,397,920 - +0.0
4,397,920 - HGI48_RS19705 0.23 +1.0
4,397,920 - HGI48_RS19705 0.23 -1.3
4,397,927 + HGI48_RS19705 0.23 -0.4
4,397,927 + HGI48_RS19705 0.23 -2.0
4,397,928 - HGI48_RS19705 0.23 -2.0
4,397,971 + HGI48_RS19705 0.28 -0.9
4,397,972 - HGI48_RS19705 0.28 -1.3
4,397,984 - HGI48_RS19705 0.30 -0.1
4,397,984 - HGI48_RS19705 0.30 -1.3
4,398,009 + -0.6
4,398,009 + HGI48_RS19705 0.32 +0.0
4,398,010 - HGI48_RS19705 0.32 +0.3
4,398,010 - HGI48_RS19705 0.32 -0.3
4,398,010 - HGI48_RS19705 0.32 +0.0
4,398,154 + HGI48_RS19705 0.48 -1.6
4,398,154 + HGI48_RS19705 0.48 -1.8
4,398,154 + HGI48_RS19705 0.48 -2.0
4,398,155 - HGI48_RS19705 0.48 +0.0
4,398,155 - HGI48_RS19705 0.48 +0.2
4,398,155 - HGI48_RS19705 0.48 -1.7
4,398,155 - -0.6
4,398,155 - HGI48_RS19705 0.48 +0.0
4,398,157 + HGI48_RS19705 0.48 +0.6
4,398,158 - HGI48_RS19705 0.48 +0.9
4,398,158 - HGI48_RS19705 0.48 -1.1
4,398,248 - HGI48_RS19705 0.58 -1.0
4,398,248 - HGI48_RS19705 0.58 +0.2
4,398,332 - HGI48_RS19705 0.67 -1.8
4,398,332 - HGI48_RS19705 0.67 -0.3
4,398,333 + HGI48_RS19705 0.67 -1.6
4,398,333 + HGI48_RS19705 0.67 -1.3
4,398,334 - HGI48_RS19705 0.67 -1.6
4,398,334 - HGI48_RS19705 0.67 +0.7
4,398,334 - HGI48_RS19705 0.67 +1.3
4,398,466 + HGI48_RS19705 0.82 -1.0
4,398,467 - HGI48_RS19705 0.82 +1.2
4,398,488 + HGI48_RS19705 0.84 -1.9
4,398,488 + HGI48_RS19705 0.84 -0.6
4,398,488 + HGI48_RS19705 0.84 -0.0
4,398,488 + HGI48_RS19705 0.84 -0.4
4,398,488 + HGI48_RS19705 0.84 -0.5
4,398,489 - HGI48_RS19705 0.84 -0.1
4,398,489 - HGI48_RS19705 0.84 +0.6
4,398,489 - HGI48_RS19705 0.84 -0.3
4,398,489 - HGI48_RS19705 0.84 +0.0
4,398,489 - HGI48_RS19705 0.84 +0.2
4,398,504 - HGI48_RS19705 0.86 -0.6
4,398,569 + -1.1
4,398,587 - +1.3
4,398,587 - +0.0
4,398,587 - +1.3
4,398,661 + -0.0
4,398,661 + +1.4
4,398,680 - -1.8
4,398,680 - +0.4
4,398,681 + -1.3
4,398,701 + +2.0
4,398,701 + +0.3
4,398,701 + -1.0
4,398,702 - +0.1
4,398,706 + -0.9
4,398,706 + -0.3
4,398,706 + -0.9
4,398,707 - +1.9
4,398,707 - -1.0

Or see this region's nucleotide sequence