Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19035

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19025 and HGI48_RS19030 are separated by 209 nucleotidesHGI48_RS19030 and HGI48_RS19035 are separated by 180 nucleotidesHGI48_RS19035 and HGI48_RS19040 are separated by 135 nucleotides HGI48_RS19025: HGI48_RS19025 - transposase, at 4,270,244 to 4,270,818 _RS19025 HGI48_RS19030: HGI48_RS19030 - tRNA-Gly, at 4,271,028 to 4,271,103 _RS19030 HGI48_RS19035: HGI48_RS19035 - oligoribonuclease, at 4,271,284 to 4,271,826 _RS19035 HGI48_RS19040: HGI48_RS19040 - small ribosomal subunit biogenesis GTPase RsgA, at 4,271,962 to 4,273,011 _RS19040 Position (kb) 4271 4272Strain fitness (log2 ratio) -2 -1 0 1 2at 4270.324 kb on + strand, within HGI48_RS19025at 4270.331 kb on - strand, within HGI48_RS19025at 4270.333 kb on - strand, within HGI48_RS19025at 4270.333 kb on - strandat 4270.386 kb on + strand, within HGI48_RS19025at 4270.387 kb on - strandat 4270.526 kb on - strand, within HGI48_RS19025at 4270.526 kb on - strand, within HGI48_RS19025at 4270.526 kb on - strand, within HGI48_RS19025at 4270.526 kb on - strand, within HGI48_RS19025at 4270.579 kb on + strand, within HGI48_RS19025at 4270.582 kb on + strand, within HGI48_RS19025at 4270.582 kb on + strand, within HGI48_RS19025at 4270.842 kb on + strandat 4270.842 kb on + strandat 4270.930 kb on - strandat 4270.930 kb on - strandat 4270.973 kb on - strandat 4270.994 kb on + strandat 4270.995 kb on - strandat 4271.006 kb on + strandat 4271.017 kb on - strandat 4271.017 kb on - strandat 4271.023 kb on + strandat 4271.023 kb on + strandat 4271.024 kb on - strandat 4271.095 kb on + strand, within HGI48_RS19030at 4271.095 kb on + strand, within HGI48_RS19030at 4271.127 kb on + strandat 4271.154 kb on + strandat 4271.154 kb on + strandat 4271.237 kb on - strandat 4271.286 kb on - strandat 4271.296 kb on - strandat 4271.887 kb on - strandat 4271.896 kb on - strandat 4271.907 kb on + strandat 4271.907 kb on + strandat 4271.907 kb on + strandat 4271.907 kb on + strandat 4271.907 kb on + strandat 4271.908 kb on - strandat 4271.908 kb on - strandat 4271.908 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.911 kb on - strandat 4271.912 kb on + strandat 4271.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,270,324 + HGI48_RS19025 0.14 +1.2
4,270,331 - HGI48_RS19025 0.15 -1.3
4,270,333 - HGI48_RS19025 0.15 +0.8
4,270,333 - +1.7
4,270,386 + HGI48_RS19025 0.25 -1.0
4,270,387 - +1.0
4,270,526 - HGI48_RS19025 0.49 -1.0
4,270,526 - HGI48_RS19025 0.49 +0.2
4,270,526 - HGI48_RS19025 0.49 +0.5
4,270,526 - HGI48_RS19025 0.49 -0.0
4,270,579 + HGI48_RS19025 0.58 -0.3
4,270,582 + HGI48_RS19025 0.59 +0.3
4,270,582 + HGI48_RS19025 0.59 +0.1
4,270,842 + -1.1
4,270,842 + +0.7
4,270,930 - +0.2
4,270,930 - +0.2
4,270,973 - -2.6
4,270,994 + -1.3
4,270,995 - -1.8
4,271,006 + -0.5
4,271,017 - -0.0
4,271,017 - -1.3
4,271,023 + +0.5
4,271,023 + -0.1
4,271,024 - +1.5
4,271,095 + HGI48_RS19030 0.88 +1.0
4,271,095 + HGI48_RS19030 0.88 +0.2
4,271,127 + +0.7
4,271,154 + +0.3
4,271,154 + -0.6
4,271,237 - -0.5
4,271,286 - +1.2
4,271,296 - -1.3
4,271,887 - -0.7
4,271,896 - +1.0
4,271,907 + -1.6
4,271,907 + -2.3
4,271,907 + -2.2
4,271,907 + -0.0
4,271,907 + -0.6
4,271,908 - -0.4
4,271,908 - +0.6
4,271,908 - +1.8
4,271,911 - +0.5
4,271,911 - -0.2
4,271,911 - +1.3
4,271,911 - +1.6
4,271,911 - +1.0
4,271,911 - -1.0
4,271,911 - -1.0
4,271,912 + -1.6
4,271,913 - -0.0

Or see this region's nucleotide sequence