Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14300

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14290 and HGI48_RS14295 overlap by 4 nucleotidesHGI48_RS14295 and HGI48_RS14300 are separated by 2 nucleotidesHGI48_RS14300 and HGI48_RS14305 are separated by 118 nucleotidesHGI48_RS14305 and HGI48_RS14310 are separated by 15 nucleotides HGI48_RS14290: HGI48_RS14290 - NADH-quinone oxidoreductase subunit NuoF, at 3,209,509 to 3,210,858 _RS14290 HGI48_RS14295: HGI48_RS14295 - NADH-quinone oxidoreductase subunit NuoE, at 3,210,855 to 3,211,385 _RS14295 HGI48_RS14300: HGI48_RS14300 - NADH-quinone oxidoreductase subunit C/D, at 3,211,388 to 3,213,187 _RS14300 HGI48_RS14305: HGI48_RS14305 - NADH-quinone oxidoreductase subunit B, at 3,213,306 to 3,213,980 _RS14305 HGI48_RS14310: HGI48_RS14310 - NADH-quinone oxidoreductase subunit A, at 3,213,996 to 3,214,442 _RS14310 Position (kb) 3211 3212 3213 3214Strain fitness (log2 ratio) -2 -1 0 1at 3210.863 kb on - strandat 3211.386 kb on - strandat 3211.433 kb on + strandat 3211.554 kb on + strandat 3211.554 kb on + strandat 3211.554 kb on + strandat 3211.670 kb on - strand, within HGI48_RS14300at 3212.388 kb on + strand, within HGI48_RS14300at 3212.392 kb on + strand, within HGI48_RS14300at 3212.750 kb on - strand, within HGI48_RS14300at 3212.782 kb on - strand, within HGI48_RS14300at 3213.475 kb on + strand, within HGI48_RS14305at 3213.771 kb on + strand, within HGI48_RS14305at 3214.102 kb on + strand, within HGI48_RS14310at 3214.176 kb on - strand, within HGI48_RS14310

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,210,863 - -1.0
3,211,386 - -1.0
3,211,433 + -1.4
3,211,554 + -0.0
3,211,554 + -1.0
3,211,554 + -1.4
3,211,670 - HGI48_RS14300 0.16 +0.6
3,212,388 + HGI48_RS14300 0.56 -1.4
3,212,392 + HGI48_RS14300 0.56 -2.0
3,212,750 - HGI48_RS14300 0.76 +0.6
3,212,782 - HGI48_RS14300 0.77 -1.0
3,213,475 + HGI48_RS14305 0.25 -1.4
3,213,771 + HGI48_RS14305 0.69 -0.5
3,214,102 + HGI48_RS14310 0.24 -2.0
3,214,176 - HGI48_RS14310 0.40 -2.0

Or see this region's nucleotide sequence