Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13485

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,953,214	+		HGI48_RS13480	0.55	-2.1
2,953,259	+		HGI48_RS13480	0.57	-0.8
2,953,259	+		HGI48_RS13480	0.57	+0.5
2,953,259	+		HGI48_RS13480	0.57	-3.4
2,953,260	-		HGI48_RS13480	0.57	-0.7
2,953,260	-		HGI48_RS13480	0.57	-1.1
2,953,262	+		HGI48_RS13480	0.57	-0.2
2,953,262	+		HGI48_RS13480	0.57	+0.2
2,953,263	-		HGI48_RS13480	0.57	-0.8
2,953,263	-		HGI48_RS13480	0.57	+1.0
2,953,263	-		HGI48_RS13480	0.57	-0.7
2,953,263	-		HGI48_RS13480	0.57	-0.4
2,953,263	-		HGI48_RS13480	0.57	+0.6
2,953,303	+		HGI48_RS13480	0.59	-2.0
2,953,316	+		HGI48_RS13480	0.60	-0.3
2,953,355	+		HGI48_RS13480	0.62	-0.3
2,953,360	+		HGI48_RS13480	0.62	+1.1
2,953,360	+		HGI48_RS13480	0.62	+1.2
2,953,360	+		HGI48_RS13480	0.62	-0.2
2,953,361	-		HGI48_RS13480	0.63	-1.5
2,953,408	+		HGI48_RS13480	0.65	+0.4
2,953,408	+		HGI48_RS13480	0.65	-2.3
2,953,409	-		HGI48_RS13480	0.65	-2.3
2,953,409	-		HGI48_RS13480	0.65	+0.5
2,953,511	+		HGI48_RS13480	0.70	-0.5
2,953,511	+		HGI48_RS13480	0.70	-0.1
2,953,567	+		HGI48_RS13480	0.73	+0.5
2,953,567	+		HGI48_RS13480	0.73	+0.1
2,953,567	+		HGI48_RS13480	0.73	-0.1
2,953,567	+				+1.5
2,953,572	-		HGI48_RS13480	0.73	-1.8
2,953,593	-		HGI48_RS13480	0.75	-1.8
2,953,593	-		HGI48_RS13480	0.75	-0.8
2,953,610	+		HGI48_RS13480	0.75	-0.8
2,953,611	-		HGI48_RS13480	0.76	-2.5
2,953,633	+		HGI48_RS13480	0.77	-1.1
2,953,634	-		HGI48_RS13480	0.77	-2.1
2,953,695	+		HGI48_RS13480	0.80	-2.1
2,953,695	+		HGI48_RS13480	0.80	-0.5
2,953,695	+		HGI48_RS13480	0.80	-0.4
2,953,695	+		HGI48_RS13480	0.80	-2.3
2,953,695	+		HGI48_RS13480	0.80	-0.8
2,953,793	+		HGI48_RS13480	0.85	+0.7
2,953,794	-		HGI48_RS13480	0.85	+0.7
2,953,816	+		HGI48_RS13480	0.86	-2.5
2,953,816	+				+0.5
2,953,819	+		HGI48_RS13480	0.86	-2.5
2,953,819	+				+0.9
2,953,819	+				-0.1
2,953,820	-		HGI48_RS13480	0.86	+0.5
2,953,857	+		HGI48_RS13480	0.88	+0.0
2,953,858	-		HGI48_RS13480	0.88	+1.6
2,953,882	+		HGI48_RS13480	0.90	-1.8
2,953,882	+		HGI48_RS13480	0.90	-2.7
2,953,882	+		HGI48_RS13480	0.90	-0.4
2,953,883	-		HGI48_RS13480	0.90	+1.1
2,953,938	-				-2.0
2,953,938	-				-0.0
2,953,979	+				-1.2
2,953,981	+				+0.2
2,954,000	+				+0.5
2,954,012	+				+0.8
2,954,095	+				+0.7
2,954,102	-				+1.1
2,954,122	+				+1.1
2,954,122	+				-2.3
2,954,123	-				-0.5
2,954,123	-				-1.3
2,954,151	+				+0.5
2,954,154	-				-0.2
2,954,158	+				+0.7
2,954,159	-				-2.7
2,954,165	+				-2.3
2,954,165	+				-2.0
2,954,165	+				-1.1
2,954,165	+				-0.7
2,954,165	+				-0.2
2,954,165	+				-0.5
2,954,166	-				+0.5
2,954,166	-				-0.1
2,954,166	-				-0.5
2,954,167	+				-1.5
2,954,167	+				-0.1
2,954,167	+				-1.5
2,954,167	+				+2.3
2,954,168	-				+0.7
2,954,168	-				-1.7
2,954,168	-				-1.8
2,954,168	-				-2.5
2,954,168	-				+1.2
2,954,168	-				-0.5
2,954,168	-				-0.5
2,954,201	+				+0.2
2,954,229	+				+1.5
2,954,229	+				-0.2
2,954,229	+				+0.2
2,954,229	+				-0.3
2,954,229	+				-0.4
2,954,230	-				-2.1
2,954,232	-				-0.1
2,954,282	-				-0.5
2,954,282	-				+1.3
2,954,315	+		HGI48_RS13485	0.12	+0.9
2,954,316	-		HGI48_RS13485	0.12	-2.1
2,954,379	-		HGI48_RS13485	0.19	-0.6
2,954,429	+		HGI48_RS13485	0.24	+0.3
2,954,429	+		HGI48_RS13485	0.24	+1.3
2,954,430	-		HGI48_RS13485	0.24	+1.1
2,954,483	+				+1.7
2,954,483	+		HGI48_RS13485	0.29	+0.7
2,954,483	+		HGI48_RS13485	0.29	+0.5
2,954,483	+		HGI48_RS13485	0.29	+0.8
2,954,483	+		HGI48_RS13485	0.29	+0.9
2,954,494	-				+2.9
2,954,523	+		HGI48_RS13485	0.34	+0.6
2,954,524	-		HGI48_RS13485	0.34	+2.1
2,954,524	-		HGI48_RS13485	0.34	-0.3
2,954,536	-		HGI48_RS13485	0.35	+0.2
2,954,538	+		HGI48_RS13485	0.35	-0.7
2,954,641	-		HGI48_RS13485	0.46	+1.8
2,954,689	-				+2.1
2,954,791	+				+3.4
2,954,930	+		HGI48_RS13485	0.76	+1.6
2,954,930	+		HGI48_RS13485	0.76	+1.7
2,954,930	+		HGI48_RS13485	0.76	-1.8
2,954,930	+		HGI48_RS13485	0.76	+2.0
2,954,930	+		HGI48_RS13485	0.76	+2.4
2,954,931	-		HGI48_RS13485	0.77	-0.3
2,954,931	-				+0.9
2,954,931	-		HGI48_RS13485	0.77	-0.3
2,954,931	-		HGI48_RS13485	0.77	+2.2
2,954,931	-		HGI48_RS13485	0.77	+1.6
2,954,970	+		HGI48_RS13485	0.81	+1.5
2,954,970	+		HGI48_RS13485	0.81	+0.2
2,954,997	+		HGI48_RS13485	0.83	-0.8
2,954,997	+		HGI48_RS13485	0.83	+1.5
2,954,998	-		HGI48_RS13485	0.84	+0.7
2,954,998	-		HGI48_RS13485	0.84	-1.5
2,954,998	-		HGI48_RS13485	0.84	+1.8
2,954,998	-		HGI48_RS13485	0.84	+0.7
2,954,998	-		HGI48_RS13485	0.84	+1.0
2,954,998	-		HGI48_RS13485	0.84	+1.5
2,955,082	+				+0.7
2,955,082	+				+1.8
2,955,082	+				+0.5
2,955,082	+				+0.3
2,955,083	-				+1.5
2,955,083	-				+1.1
2,955,083	-				+1.3
2,955,083	-				-0.6
2,955,083	-				+1.4
2,955,102	+				+3.2
2,955,119	+				+0.2
2,955,120	-				+0.9
2,955,120	-				-0.3
2,955,158	+				+2.6
2,955,158	+				-0.1
2,955,267	-		HGI48_RS13490	0.10	+1.4
2,955,272	+				+3.6
2,955,417	-		HGI48_RS13490	0.24	+2.3
2,955,453	-		HGI48_RS13490	0.27	+2.4
2,955,453	-		HGI48_RS13490	0.27	+0.5
2,955,486	-		HGI48_RS13490	0.30	+1.5
2,955,486	-		HGI48_RS13490	0.30	+1.8
2,955,527	+		HGI48_RS13490	0.34	-0.1
2,955,527	+		HGI48_RS13490	0.34	+1.9
2,955,528	-		HGI48_RS13490	0.34	+1.2
2,955,528	-		HGI48_RS13490	0.34	-0.1
2,955,528	-		HGI48_RS13490	0.34	+1.8
2,955,590	+		HGI48_RS13490	0.39	-0.3
2,955,591	-		HGI48_RS13490	0.39	+2.1
2,955,604	-		HGI48_RS13490	0.41	+2.0
2,955,665	+		HGI48_RS13490	0.46	+0.5
2,955,665	+				+2.7
2,955,666	-		HGI48_RS13490	0.46	-0.6
2,955,701	+		HGI48_RS13490	0.49	+1.5
2,955,701	+		HGI48_RS13490	0.49	+2.1
2,955,701	+		HGI48_RS13490	0.49	-1.3
2,955,702	-				+0.5
2,955,755	+				+0.5
2,955,756	-		HGI48_RS13490	0.54	+1.5
2,955,758	+		HGI48_RS13490	0.55	-0.9
2,955,780	+		HGI48_RS13490	0.56	+0.8
2,955,828	+		HGI48_RS13490	0.61	+0.8
2,955,828	+		HGI48_RS13490	0.61	+1.2
2,955,828	+		HGI48_RS13490	0.61	-0.0
2,955,828	+				+3.2
2,955,828	+		HGI48_RS13490	0.61	+1.4
2,955,828	+		HGI48_RS13490	0.61	-0.2
2,955,828	+				+2.2
2,955,829	-		HGI48_RS13490	0.61	+0.1
2,955,829	-		HGI48_RS13490	0.61	+1.4
2,955,829	-		HGI48_RS13490	0.61	+1.3
2,955,829	-		HGI48_RS13490	0.61	+1.2
2,955,829	-		HGI48_RS13490	0.61	+1.0
2,955,829	-		HGI48_RS13490	0.61	+0.2
2,955,850	+		HGI48_RS13490	0.63	+0.5
2,955,850	+		HGI48_RS13490	0.63	+1.6
2,955,850	+		HGI48_RS13490	0.63	+2.5
2,955,850	+		HGI48_RS13490	0.63	+0.8
2,955,850	+		HGI48_RS13490	0.63	+0.2
2,955,851	-		HGI48_RS13490	0.63	+0.8
2,955,851	-		HGI48_RS13490	0.63	+1.1
2,955,851	-		HGI48_RS13490	0.63	+1.5
2,955,851	-		HGI48_RS13490	0.63	+0.7
2,955,923	+		HGI48_RS13490	0.69	+1.1
2,955,923	+		HGI48_RS13490	0.69	+0.3