Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08780

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08775 and HGI48_RS08780 overlap by 11 nucleotidesHGI48_RS08780 and HGI48_RS08785 are separated by 449 nucleotides HGI48_RS08775: HGI48_RS08775 - ABC transporter ATP-binding protein, at 1,886,257 to 1,888,008 _RS08775 HGI48_RS08780: HGI48_RS08780 - secretion protein HlyD, at 1,887,998 to 1,889,002 _RS08780 HGI48_RS08785: HGI48_RS08785 - ATP-dependent RNA helicase RhlE, at 1,889,452 to 1,890,810 _RS08785 Position (kb) 1887 1888 1889 1890Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1887.212 kb on + strand, within HGI48_RS08775at 1887.212 kb on + strand, within HGI48_RS08775at 1887.414 kb on - strand, within HGI48_RS08775at 1887.414 kb on - strand, within HGI48_RS08775at 1887.619 kb on - strand, within HGI48_RS08775at 1887.619 kb on - strand, within HGI48_RS08775at 1887.692 kb on + strand, within HGI48_RS08775at 1887.728 kb on + strand, within HGI48_RS08775at 1887.729 kb on - strand, within HGI48_RS08775at 1887.753 kb on - strand, within HGI48_RS08775at 1888.115 kb on + strand, within HGI48_RS08780at 1888.213 kb on - strand, within HGI48_RS08780at 1888.266 kb on + strand, within HGI48_RS08780at 1888.303 kb on + strand, within HGI48_RS08780at 1888.380 kb on + strand, within HGI48_RS08780at 1888.398 kb on - strand, within HGI48_RS08780at 1888.612 kb on - strand, within HGI48_RS08780at 1888.893 kb on + strand, within HGI48_RS08780at 1888.893 kb on + strand, within HGI48_RS08780at 1888.893 kb on + strand, within HGI48_RS08780at 1888.894 kb on - strand, within HGI48_RS08780at 1888.894 kb on - strand, within HGI48_RS08780at 1888.982 kb on + strandat 1889.003 kb on - strandat 1889.029 kb on + strandat 1889.079 kb on + strandat 1889.080 kb on - strandat 1889.080 kb on - strandat 1889.084 kb on + strandat 1889.084 kb on + strandat 1889.091 kb on - strandat 1889.247 kb on + strandat 1889.295 kb on + strandat 1889.296 kb on - strandat 1889.320 kb on + strandat 1889.320 kb on + strandat 1889.321 kb on - strandat 1889.321 kb on - strandat 1889.321 kb on - strandat 1889.321 kb on - strandat 1889.360 kb on + strandat 1889.361 kb on - strandat 1889.451 kb on + strandat 1889.452 kb on - strandat 1889.452 kb on - strandat 1889.485 kb on - strandat 1889.485 kb on - strandat 1889.743 kb on + strand, within HGI48_RS08785at 1889.743 kb on + strand, within HGI48_RS08785at 1889.744 kb on - strand, within HGI48_RS08785at 1889.744 kb on - strand, within HGI48_RS08785at 1889.744 kb on - strand, within HGI48_RS08785at 1889.752 kb on + strand, within HGI48_RS08785at 1889.753 kb on - strand, within HGI48_RS08785at 1889.753 kb on - strand, within HGI48_RS08785at 1889.796 kb on + strand, within HGI48_RS08785at 1889.932 kb on - strand, within HGI48_RS08785

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,887,212 + HGI48_RS08775 0.55 -2.6
1,887,212 + HGI48_RS08775 0.55 -1.1
1,887,414 - HGI48_RS08775 0.66 +0.7
1,887,414 - HGI48_RS08775 0.66 +1.5
1,887,619 - HGI48_RS08775 0.78 -1.5
1,887,619 - HGI48_RS08775 0.78 +0.8
1,887,692 + HGI48_RS08775 0.82 +1.1
1,887,728 + HGI48_RS08775 0.84 -1.5
1,887,729 - HGI48_RS08775 0.84 +0.5
1,887,753 - HGI48_RS08775 0.85 -2.3
1,888,115 + HGI48_RS08780 0.12 -0.3
1,888,213 - HGI48_RS08780 0.21 -2.6
1,888,266 + HGI48_RS08780 0.27 -1.1
1,888,303 + HGI48_RS08780 0.30 -0.8
1,888,380 + HGI48_RS08780 0.38 -0.3
1,888,398 - HGI48_RS08780 0.40 -1.8
1,888,612 - HGI48_RS08780 0.61 -0.8
1,888,893 + HGI48_RS08780 0.89 +0.1
1,888,893 + HGI48_RS08780 0.89 -1.5
1,888,893 + HGI48_RS08780 0.89 -0.8
1,888,894 - HGI48_RS08780 0.89 -0.6
1,888,894 - HGI48_RS08780 0.89 -0.5
1,888,982 + -0.2
1,889,003 - +1.6
1,889,029 + +0.1
1,889,079 + +0.1
1,889,080 - -1.6
1,889,080 - -0.0
1,889,084 + -1.1
1,889,084 + +1.0
1,889,091 - +1.8
1,889,247 + -2.3
1,889,295 + -1.1
1,889,296 - -0.9
1,889,320 + -1.5
1,889,320 + -1.4
1,889,321 - -1.8
1,889,321 - -1.3
1,889,321 - -0.1
1,889,321 - -0.5
1,889,360 + +0.1
1,889,361 - +3.3
1,889,451 + +0.1
1,889,452 - +0.3
1,889,452 - +0.9
1,889,485 - -0.3
1,889,485 - -1.8
1,889,743 + HGI48_RS08785 0.21 -0.8
1,889,743 + HGI48_RS08785 0.21 -2.1
1,889,744 - HGI48_RS08785 0.21 -2.1
1,889,744 - HGI48_RS08785 0.21 -0.2
1,889,744 - HGI48_RS08785 0.21 +0.5
1,889,752 + HGI48_RS08785 0.22 -2.5
1,889,753 - HGI48_RS08785 0.22 +2.4
1,889,753 - HGI48_RS08785 0.22 -0.8
1,889,796 + HGI48_RS08785 0.25 +0.4
1,889,932 - HGI48_RS08785 0.35 -0.1

Or see this region's nucleotide sequence