Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05225

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,094,313	-		HGI48_RS05215	0.22	-0.1
1,094,341	+		HGI48_RS05215	0.36	+0.2
1,094,341	+		HGI48_RS05215	0.36	+1.4
1,094,341	+				+1.3
1,094,341	+		HGI48_RS05215	0.36	-0.1
1,094,403	+		HGI48_RS05215	0.67	-1.3
1,094,403	+		HGI48_RS05215	0.67	+0.6
1,094,403	+		HGI48_RS05215	0.67	+1.7
1,094,404	-		HGI48_RS05215	0.67	-0.7
1,094,450	-				-1.1
1,094,459	+				+0.6
1,094,460	-				-2.1
1,094,469	+				-1.0
1,094,469	+				+0.3
1,094,472	+				+0.8
1,094,473	-				-1.3
1,094,473	-				+0.2
1,094,482	+				-2.3
1,094,483	-				-0.4
1,094,538	+				-0.3
1,094,538	+				-0.1
1,094,538	+				+0.1
1,094,538	+				+0.4
1,094,538	+				-0.8
1,094,538	+				+1.1
1,094,538	+				+0.6
1,094,538	+				-0.3
1,094,539	-				+0.7
1,094,544	+				-1.1
1,094,552	+				+0.7
1,094,552	+				-2.0
1,094,575	+				+1.4
1,094,576	-				-0.7
1,094,577	+				-0.3
1,094,577	+				-0.6
1,094,578	-				-1.6
1,094,578	-				-2.8
1,094,578	-				-0.8
1,094,582	+				+0.0
1,094,619	-				-1.6
1,094,619	-				+0.7
1,094,619	-				+0.6
1,094,619	-				-3.4
1,094,661	+				+1.4
1,094,661	+				-1.0
1,094,662	-				+0.5
1,094,662	-				-1.6
1,094,662	-				+1.9
1,094,662	-				+1.1
1,094,662	-				-0.1
1,094,662	-				-0.7
1,094,662	-				+1.2
1,094,677	+				-0.4
1,094,694	-				-1.3
1,094,697	+				+0.7
1,094,717	-				+1.2
1,094,717	-				+0.6
1,094,733	-				-0.1
1,094,879	+		HGI48_RS05220	0.31	-1.1
1,094,947	+		HGI48_RS05220	0.43	+0.5
1,094,948	-		HGI48_RS05220	0.44	+0.3
1,095,019	+		HGI48_RS05220	0.56	+0.3
1,095,019	+		HGI48_RS05220	0.56	+0.7
1,095,019	+		HGI48_RS05220	0.56	+0.7
1,095,019	+		HGI48_RS05220	0.56	+0.5
1,095,019	+		HGI48_RS05220	0.56	-1.6
1,095,019	+		HGI48_RS05220	0.56	-0.3
1,095,020	-		HGI48_RS05220	0.57	-1.8
1,095,020	-		HGI48_RS05220	0.57	+0.4
1,095,020	-		HGI48_RS05220	0.57	+0.7
1,095,020	-		HGI48_RS05220	0.57	+0.6
1,095,020	-		HGI48_RS05220	0.57	-3.1
1,095,020	-		HGI48_RS05220	0.57	+0.9
1,095,020	-		HGI48_RS05220	0.57	-0.3
1,095,020	-		HGI48_RS05220	0.57	+0.2
1,095,021	+				-0.8
1,095,021	+				-0.8
1,095,021	+		HGI48_RS05220	0.57	-0.1
1,095,021	+		HGI48_RS05220	0.57	-1.4
1,095,021	+		HGI48_RS05220	0.57	-1.8
1,095,021	+		HGI48_RS05220	0.57	-1.3
1,095,022	-		HGI48_RS05220	0.57	-1.6
1,095,022	-		HGI48_RS05220	0.57	-1.1
1,095,022	-		HGI48_RS05220	0.57	+0.3
1,095,028	-		HGI48_RS05220	0.58	-2.3
1,095,163	+		HGI48_RS05220	0.83	-1.6
1,095,163	+		HGI48_RS05220	0.83	-2.7
1,095,164	-		HGI48_RS05220	0.83	+1.2
1,095,170	+				-0.8
1,095,171	-		HGI48_RS05220	0.84	-1.8
1,095,171	-		HGI48_RS05220	0.84	-2.3
1,095,188	+		HGI48_RS05220	0.87	+0.4
1,095,189	-		HGI48_RS05220	0.87	+0.9
1,095,189	-		HGI48_RS05220	0.87	-2.1
1,095,189	-		HGI48_RS05220	0.87	+0.1
1,095,189	-		HGI48_RS05220	0.87	-1.7
1,095,189	-		HGI48_RS05220	0.87	+1.0
1,095,189	-		HGI48_RS05220	0.87	-0.4
1,095,233	+				-0.4
1,095,234	-				-1.8
1,095,234	-				+0.7
1,095,234	-				+1.7
1,095,234	-				+1.3
1,095,256	-				-0.2
1,095,299	+				-1.6
1,095,299	+				-1.3
1,095,300	-				-0.4
1,095,300	-				-0.3
1,095,300	-				+0.4
1,095,395	+		HGI48_RS05225	0.15	-3.0
1,095,396	-		HGI48_RS05225	0.15	-0.8
1,095,412	+		HGI48_RS05225	0.18	-1.0
1,095,412	+		HGI48_RS05225	0.18	-2.4
1,095,413	-		HGI48_RS05225	0.18	+0.2
1,095,416	-		HGI48_RS05225	0.18	-2.3
1,095,423	+				-0.8
1,095,424	-		HGI48_RS05225	0.20	-0.3
1,095,457	-		HGI48_RS05225	0.25	-0.8
1,095,457	-		HGI48_RS05225	0.25	+1.7
1,095,457	-		HGI48_RS05225	0.25	+0.1
1,095,506	-		HGI48_RS05225	0.33	-1.1
1,095,506	-		HGI48_RS05225	0.33	-0.5
1,095,506	-				-0.8
1,095,592	+		HGI48_RS05225	0.47	-0.1
1,095,593	-		HGI48_RS05225	0.47	-0.1
1,095,607	+		HGI48_RS05225	0.50	-1.6
1,095,711	+		HGI48_RS05225	0.67	+1.5
1,095,756	+		HGI48_RS05225	0.74	-0.3
1,095,756	+		HGI48_RS05225	0.74	-2.1
1,095,787	+		HGI48_RS05225	0.79	-1.6
1,095,787	+		HGI48_RS05225	0.79	+1.3
1,095,787	+		HGI48_RS05225	0.79	+0.7
1,095,787	+		HGI48_RS05225	0.79	+0.7
1,095,787	+		HGI48_RS05225	0.79	-0.6
1,095,787	+		HGI48_RS05225	0.79	-1.3
1,095,787	+		HGI48_RS05225	0.79	+0.9
1,095,787	+		HGI48_RS05225	0.79	+1.2
1,095,787	+		HGI48_RS05225	0.79	+0.7
1,095,787	+		HGI48_RS05225	0.79	+0.1
1,095,788	-		HGI48_RS05225	0.79	-1.0
1,095,788	-		HGI48_RS05225	0.79	+1.9
1,095,788	-		HGI48_RS05225	0.79	-3.1
1,095,789	+		HGI48_RS05225	0.80	-1.8
1,095,789	+		HGI48_RS05225	0.80	+0.2
1,095,789	+		HGI48_RS05225	0.80	-1.8
1,095,789	+		HGI48_RS05225	0.80	+0.7
1,095,789	+		HGI48_RS05225	0.80	-1.3
1,095,790	-		HGI48_RS05225	0.80	-1.5
1,095,790	-		HGI48_RS05225	0.80	-1.6
1,095,790	-		HGI48_RS05225	0.80	+0.3
1,095,790	-		HGI48_RS05225	0.80	+1.3
1,095,790	-		HGI48_RS05225	0.80	-0.7
1,095,790	-		HGI48_RS05225	0.80	-1.6
1,095,790	-		HGI48_RS05225	0.80	-0.4
1,095,862	+				-0.3
1,095,862	+				-1.3
1,095,862	+				-0.3
1,095,862	+				+1.0
1,095,862	+				-0.4
1,095,862	+				+0.4
1,095,863	-				-1.3
1,095,863	-				+0.7
1,095,863	-				+0.0
1,095,863	-				-2.1
1,095,863	-				+1.6
1,095,865	+				-0.3
1,095,865	+				+1.1
1,095,865	+				+0.1
1,095,866	-				+0.2
1,095,866	-				-0.3
1,095,871	+				+0.7
1,095,944	+				-1.5
1,095,945	-				+0.7
1,095,945	-				-1.8
1,095,945	-				+0.3
1,095,998	+				-0.8
1,095,998	+				+0.6
1,095,999	-				-1.6
1,095,999	-				-0.4
1,095,999	-				+0.7
1,095,999	-				-1.4
1,096,017	+				+0.6
1,096,017	+				-1.3
1,096,017	+				+0.9
1,096,018	-				+0.0
1,096,018	-				+0.3
1,096,018	-				+0.7
1,096,018	-				-0.2
1,096,018	-				-0.5
1,096,019	+				+1.3
1,096,019	+				-0.8
1,096,019	+				+1.7
1,096,019	+				+1.5
1,096,020	-				-1.3
1,096,020	-				+0.5
1,096,020	-				+0.0
1,096,020	-				+1.3
1,096,020	-				-1.8
1,096,020	-				-0.2
1,096,020	-				+1.2
1,096,020	-				+0.0
1,096,281	+		HGI48_RS05230	0.11	-0.1
1,096,281	+		HGI48_RS05230	0.11	-2.6
1,096,281	+		HGI48_RS05230	0.11	-1.6
1,096,281	+		HGI48_RS05230	0.11	-0.2
1,096,282	-		HGI48_RS05230	0.11	+0.4
1,096,370	+		HGI48_RS05230	0.15	+1.2
1,096,370	+		HGI48_RS05230	0.15	-1.6
1,096,371	-		HGI48_RS05230	0.15	-1.3
1,096,371	-		HGI48_RS05230	0.15	-0.5
1,096,371	-				+0.2
1,096,451	+		HGI48_RS05230	0.18	-0.9
1,096,451	+		HGI48_RS05230	0.18	-0.6
1,096,487	-		HGI48_RS05230	0.19	-0.5
1,096,600	-		HGI48_RS05230	0.24	-0.1
1,096,640	+		HGI48_RS05230	0.25	-1.3
1,096,640	+		HGI48_RS05230	0.25	-1.1
1,096,640	+		HGI48_RS05230	0.25	-1.6
1,096,641	-		HGI48_RS05230	0.25	+0.2
1,096,641	-		HGI48_RS05230	0.25	-2.1
1,096,688	+		HGI48_RS05230	0.27	-0.1
1,096,688	+		HGI48_RS05230	0.27	+0.5
1,096,688	+		HGI48_RS05230	0.27	+0.7
1,096,688	+		HGI48_RS05230	0.27	-0.6
1,096,688	+		HGI48_RS05230	0.27	-0.1
1,096,688	+		HGI48_RS05230	0.27	-0.2
1,096,689	-		HGI48_RS05230	0.27	-0.7
1,096,689	-		HGI48_RS05230	0.27	-1.8
1,096,689	-		HGI48_RS05230	0.27	-2.1
1,096,767	+		HGI48_RS05230	0.30	-0.1
1,096,767	+		HGI48_RS05230	0.30	+0.7
1,096,767	+		HGI48_RS05230	0.30	+0.2
1,096,767	+		HGI48_RS05230	0.30	-1.1
1,096,767	+		HGI48_RS05230	0.30	-0.4
1,096,856	+		HGI48_RS05230	0.34	+1.5
1,096,857	-		HGI48_RS05230	0.34	-1.8
1,096,857	-		HGI48_RS05230	0.34	-0.2
1,096,857	-		HGI48_RS05230	0.34	+0.2
1,096,857	-		HGI48_RS05230	0.34	-1.8
1,096,857	-		HGI48_RS05230	0.34	-0.7
1,096,857	-		HGI48_RS05230	0.34	-0.3
1,096,857	-		HGI48_RS05230	0.34	+0.2