Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03650 and HGI48_RS03655 overlap by 4 nucleotides HGI48_RS03655 and HGI48_RS03660 are separated by 219 nucleotides
HGI48_RS03650: HGI48_RS03650 - HlyD family secretion protein, at 774,442 to 775,593
_RS03650
HGI48_RS03655: HGI48_RS03655 - MarR family transcriptional regulator, at 775,590 to 776,045
_RS03655
HGI48_RS03660: HGI48_RS03660 - GntR family transcriptional regulator, at 776,265 to 776,967
_RS03660
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.690 kb on + strand, within HGI48_RS03650 at 774.803 kb on + strand, within HGI48_RS03650 at 774.803 kb on + strand at 775.125 kb on + strand, within HGI48_RS03650 at 775.126 kb on - strand, within HGI48_RS03650 at 775.253 kb on + strand at 775.253 kb on + strand, within HGI48_RS03650 at 775.481 kb on + strand at 775.536 kb on + strand at 775.537 kb on - strand at 775.537 kb on - strand at 775.552 kb on + strand at 775.552 kb on + strand at 775.553 kb on - strand at 775.662 kb on - strand, within HGI48_RS03655 at 775.694 kb on + strand, within HGI48_RS03655 at 775.728 kb on + strand, within HGI48_RS03655 at 775.729 kb on - strand, within HGI48_RS03655 at 775.729 kb on - strand, within HGI48_RS03655 at 776.062 kb on + strand at 776.063 kb on - strand at 776.099 kb on + strand at 776.128 kb on + strand at 776.151 kb on + strand at 776.151 kb on + strand at 776.152 kb on - strand at 776.152 kb on - strand at 776.168 kb on + strand at 776.169 kb on - strand at 776.208 kb on + strand at 776.208 kb on + strand at 776.209 kb on - strand at 776.209 kb on - strand at 776.209 kb on - strand at 776.212 kb on + strand at 776.212 kb on + strand at 776.212 kb on + strand at 776.212 kb on + strand at 776.213 kb on - strand at 776.213 kb on - strand at 776.213 kb on - strand at 776.213 kb on - strand at 776.213 kb on - strand at 776.294 kb on + strand at 776.294 kb on + strand at 776.464 kb on - strand, within HGI48_RS03660 at 776.469 kb on + strand, within HGI48_RS03660 at 776.469 kb on + strand, within HGI48_RS03660 at 776.469 kb on + strand, within HGI48_RS03660 at 776.469 kb on + strand, within HGI48_RS03660 at 776.470 kb on - strand, within HGI48_RS03660 at 776.470 kb on - strand, within HGI48_RS03660 at 776.470 kb on - strand, within HGI48_RS03660 at 776.470 kb on - strand, within HGI48_RS03660 at 776.470 kb on - strand, within HGI48_RS03660 at 776.557 kb on + strand, within HGI48_RS03660 at 776.558 kb on - strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.697 kb on + strand, within HGI48_RS03660 at 776.698 kb on - strand at 776.698 kb on - strand, within HGI48_RS03660 at 776.698 kb on - strand, within HGI48_RS03660 at 776.698 kb on - strand, within HGI48_RS03660 at 776.698 kb on - strand at 776.699 kb on + strand, within HGI48_RS03660 at 776.699 kb on + strand, within HGI48_RS03660 at 776.700 kb on - strand, within HGI48_RS03660 at 776.700 kb on - strand, within HGI48_RS03660 at 776.700 kb on - strand, within HGI48_RS03660 at 776.703 kb on + strand, within HGI48_RS03660 at 776.703 kb on + strand, within HGI48_RS03660 at 776.704 kb on - strand at 776.704 kb on - strand, within HGI48_RS03660 at 776.704 kb on - strand at 776.707 kb on + strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.748 kb on - strand, within HGI48_RS03660 at 776.771 kb on + strand, within HGI48_RS03660 at 776.863 kb on + strand, within HGI48_RS03660 at 776.887 kb on + strand, within HGI48_RS03660 at 777.006 kb on + strand at 777.006 kb on + strand at 777.006 kb on + strand at 777.007 kb on - strand at 777.007 kb on - strand at 777.011 kb on + strand at 777.025 kb on + strand at 777.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 774,690 + HGI48_RS03650 0.22 +0.4 774,803 + HGI48_RS03650 0.31 -0.5 774,803 + -0.2 775,125 + HGI48_RS03650 0.59 +0.2 775,126 - HGI48_RS03650 0.59 +1.0 775,253 + -0.2 775,253 + HGI48_RS03650 0.70 -0.2 775,481 + -0.5 775,536 + -1.1 775,537 - -0.5 775,537 - +0.8 775,552 + +2.2 775,552 + -0.2 775,553 - -0.3 775,662 - HGI48_RS03655 0.16 -1.2 775,694 + HGI48_RS03655 0.23 -1.5 775,728 + HGI48_RS03655 0.30 -0.7 775,729 - HGI48_RS03655 0.30 -2.3 775,729 - HGI48_RS03655 0.30 +1.2 776,062 + -0.2 776,063 - -2.0 776,099 + +0.6 776,128 + -0.7 776,151 + -1.2 776,151 + +2.1 776,152 - -0.8 776,152 - +0.0 776,168 + -0.2 776,169 - +1.0 776,208 + +0.1 776,208 + -1.7 776,209 - -0.0 776,209 - -1.7 776,209 - +1.2 776,212 + -2.0 776,212 + +0.6 776,212 + -0.7 776,212 + +1.6 776,213 - -0.3 776,213 - +0.8 776,213 - +0.7 776,213 - +0.5 776,213 - +1.5 776,294 + +0.8 776,294 + +1.2 776,464 - HGI48_RS03660 0.28 +0.4 776,469 + HGI48_RS03660 0.29 -1.5 776,469 + HGI48_RS03660 0.29 +0.6 776,469 + HGI48_RS03660 0.29 +0.4 776,469 + HGI48_RS03660 0.29 +0.1 776,470 - HGI48_RS03660 0.29 -2.2 776,470 - HGI48_RS03660 0.29 +0.1 776,470 - HGI48_RS03660 0.29 -1.2 776,470 - HGI48_RS03660 0.29 -1.2 776,470 - HGI48_RS03660 0.29 +0.4 776,557 + HGI48_RS03660 0.42 -1.4 776,558 - HGI48_RS03660 0.42 -0.1 776,697 + HGI48_RS03660 0.61 -1.7 776,697 + HGI48_RS03660 0.61 -2.5 776,697 + HGI48_RS03660 0.61 -1.2 776,697 + HGI48_RS03660 0.61 +1.1 776,697 + HGI48_RS03660 0.61 -1.5 776,697 + HGI48_RS03660 0.61 -1.2 776,698 - +1.4 776,698 - HGI48_RS03660 0.62 +0.3 776,698 - HGI48_RS03660 0.62 -2.0 776,698 - HGI48_RS03660 0.62 -1.2 776,698 - +1.3 776,699 + HGI48_RS03660 0.62 +1.5 776,699 + HGI48_RS03660 0.62 -2.3 776,700 - HGI48_RS03660 0.62 -1.5 776,700 - HGI48_RS03660 0.62 +1.1 776,700 - HGI48_RS03660 0.62 -1.5 776,703 + HGI48_RS03660 0.62 +1.1 776,703 + HGI48_RS03660 0.62 -1.0 776,704 - +1.8 776,704 - HGI48_RS03660 0.62 +1.1 776,704 - +0.3 776,707 + HGI48_RS03660 0.63 +0.2 776,748 - HGI48_RS03660 0.69 -0.4 776,748 - HGI48_RS03660 0.69 +0.8 776,748 - HGI48_RS03660 0.69 -0.6 776,748 - HGI48_RS03660 0.69 -3.2 776,748 - HGI48_RS03660 0.69 +1.3 776,748 - HGI48_RS03660 0.69 -0.8 776,771 + HGI48_RS03660 0.72 +1.1 776,863 + HGI48_RS03660 0.85 -0.9 776,887 + HGI48_RS03660 0.88 -1.6 777,006 + +0.2 777,006 + -0.3 777,006 + -0.7 777,007 - -0.5 777,007 - +1.5 777,011 + -0.2 777,025 + +1.4 777,025 + -1.6
Or see this region's nucleotide sequence