Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02335

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02330 and HGI48_RS02335 are separated by 716 nucleotidesHGI48_RS02335 and HGI48_RS02340 are separated by 494 nucleotides HGI48_RS02330: HGI48_RS02330 - hypothetical protein, at 505,830 to 506,558 _RS02330 HGI48_RS02335: HGI48_RS02335 - DUF1440 domain-containing protein, at 507,275 to 507,817 _RS02335 HGI48_RS02340: HGI48_RS02340 - FAD-dependent 2-octaprenylphenol hydroxylase, at 508,312 to 509,523 _RS02340 Position (kb) 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 506.309 kb on + strand, within HGI48_RS02330at 506.358 kb on - strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.361 kb on - strand, within HGI48_RS02330at 506.387 kb on - strand, within HGI48_RS02330at 506.496 kb on + strandat 506.555 kb on - strandat 506.559 kb on - strandat 506.596 kb on - strandat 506.628 kb on - strandat 506.648 kb on - strandat 506.661 kb on + strandat 506.947 kb on - strandat 507.001 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.025 kb on - strandat 507.038 kb on - strandat 507.081 kb on + strandat 507.169 kb on + strandat 507.169 kb on + strandat 507.170 kb on - strandat 507.211 kb on + strandat 507.211 kb on + strandat 507.212 kb on - strandat 507.212 kb on - strandat 507.302 kb on - strandat 507.302 kb on - strandat 507.322 kb on + strandat 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.544 kb on - strand, within HGI48_RS02335at 507.544 kb on - strandat 507.553 kb on + strand, within HGI48_RS02335at 507.554 kb on - strand, within HGI48_RS02335at 507.559 kb on + strand, within HGI48_RS02335at 507.621 kb on + strand, within HGI48_RS02335at 507.621 kb on + strand, within HGI48_RS02335at 507.622 kb on - strandat 507.622 kb on - strand, within HGI48_RS02335at 507.665 kb on + strand, within HGI48_RS02335at 507.666 kb on - strand, within HGI48_RS02335at 507.666 kb on - strand, within HGI48_RS02335at 507.865 kb on - strandat 507.952 kb on + strandat 508.019 kb on + strandat 508.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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506,309 + HGI48_RS02330 0.66 +0.3
506,358 - HGI48_RS02330 0.72 +0.5
506,360 + HGI48_RS02330 0.73 +0.5
506,360 + HGI48_RS02330 0.73 +0.2
506,361 - HGI48_RS02330 0.73 -0.5
506,387 - HGI48_RS02330 0.76 +0.7
506,496 + -1.1
506,555 - +0.7
506,559 - +0.9
506,596 - -0.4
506,628 - +1.4
506,648 - +0.9
506,661 + +0.4
506,947 - -0.1
507,001 + +2.9
507,024 + +1.4
507,024 + -0.6
507,024 + +0.2
507,025 - +1.2
507,038 - -0.0
507,081 + +0.5
507,169 + -0.0
507,169 + -0.9
507,170 - -0.8
507,211 + -1.0
507,211 + -1.1
507,212 - -0.4
507,212 - -0.8
507,302 - +0.9
507,302 - +0.4
507,322 + -0.1
507,376 + HGI48_RS02335 0.19 -3.4
507,376 + HGI48_RS02335 0.19 +0.9
507,376 + HGI48_RS02335 0.19 +2.2
507,376 + HGI48_RS02335 0.19 -2.8
507,376 + HGI48_RS02335 0.19 -1.6
507,376 + HGI48_RS02335 0.19 +0.7
507,377 - HGI48_RS02335 0.19 -1.6
507,377 - HGI48_RS02335 0.19 +0.5
507,377 - HGI48_RS02335 0.19 -0.1
507,377 - HGI48_RS02335 0.19 +0.9
507,377 - HGI48_RS02335 0.19 -0.3
507,377 - HGI48_RS02335 0.19 +1.4
507,377 - HGI48_RS02335 0.19 -0.1
507,377 - HGI48_RS02335 0.19 -0.6
507,377 - HGI48_RS02335 0.19 -0.6
507,377 - HGI48_RS02335 0.19 -2.1
507,377 - HGI48_RS02335 0.19 -0.3
507,377 - HGI48_RS02335 0.19 -1.6
507,544 - HGI48_RS02335 0.50 -1.2
507,544 - -0.1
507,553 + HGI48_RS02335 0.51 +0.1
507,554 - HGI48_RS02335 0.51 -0.1
507,559 + HGI48_RS02335 0.52 -2.1
507,621 + HGI48_RS02335 0.64 -0.7
507,621 + HGI48_RS02335 0.64 -1.5
507,622 - +3.2
507,622 - HGI48_RS02335 0.64 -0.1
507,665 + HGI48_RS02335 0.72 -0.0
507,666 - HGI48_RS02335 0.72 -1.6
507,666 - HGI48_RS02335 0.72 -0.6
507,865 - -1.1
507,952 + +0.3
508,019 + +2.3
508,102 - -3.1

Or see this region's nucleotide sequence