Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01815 and HGI48_RS01820 are separated by 153 nucleotides HGI48_RS01820 and HGI48_RS01825 are separated by 98 nucleotides HGI48_RS01825 and HGI48_RS01830 are separated by 387 nucleotides
HGI48_RS01815: HGI48_RS01815 - YhbP family protein, at 402,987 to 403,439
_RS01815
HGI48_RS01820: HGI48_RS01820 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 403,593 to 404,057
_RS01820
HGI48_RS01825: HGI48_RS01825 - anaerobic ribonucleoside-triphosphate reductase, at 404,156 to 406,294
_RS01825
HGI48_RS01830: HGI48_RS01830 - homocysteine S-methyltransferase family protein, at 406,682 to 407,590
_RS01830
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 403.296 kb on + strand, within HGI48_RS01815 at 403.296 kb on + strand, within HGI48_RS01815 at 403.298 kb on + strand, within HGI48_RS01815 at 403.298 kb on + strand, within HGI48_RS01815 at 403.298 kb on + strand, within HGI48_RS01815 at 403.298 kb on + strand, within HGI48_RS01815 at 403.299 kb on - strand at 403.418 kb on + strand at 403.418 kb on + strand at 403.418 kb on + strand at 403.418 kb on + strand at 403.419 kb on - strand at 403.460 kb on - strand at 403.473 kb on + strand at 403.473 kb on + strand at 403.473 kb on + strand at 403.488 kb on + strand at 403.488 kb on + strand at 403.489 kb on - strand at 403.489 kb on - strand at 403.489 kb on - strand at 403.503 kb on + strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.518 kb on + strand at 403.519 kb on - strand at 403.519 kb on - strand at 403.519 kb on - strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.533 kb on + strand at 403.955 kb on + strand, within HGI48_RS01820 at 403.957 kb on + strand, within HGI48_RS01820 at 403.957 kb on + strand, within HGI48_RS01820 at 403.958 kb on - strand, within HGI48_RS01820 at 403.958 kb on - strand, within HGI48_RS01820 at 403.958 kb on - strand at 403.958 kb on - strand, within HGI48_RS01820 at 403.958 kb on - strand, within HGI48_RS01820 at 404.000 kb on + strand, within HGI48_RS01820 at 404.000 kb on + strand, within HGI48_RS01820 at 404.000 kb on + strand at 404.000 kb on + strand, within HGI48_RS01820 at 404.000 kb on + strand, within HGI48_RS01820 at 404.000 kb on + strand, within HGI48_RS01820 at 404.000 kb on + strand, within HGI48_RS01820 at 404.001 kb on - strand, within HGI48_RS01820 at 404.001 kb on - strand, within HGI48_RS01820 at 404.001 kb on - strand, within HGI48_RS01820 at 404.001 kb on - strand, within HGI48_RS01820 at 404.001 kb on - strand, within HGI48_RS01820 at 404.041 kb on + strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.042 kb on - strand at 404.050 kb on + strand at 404.050 kb on + strand at 404.050 kb on + strand at 404.051 kb on - strand at 404.051 kb on - strand at 404.051 kb on - strand at 404.250 kb on + strand at 404.314 kb on + strand at 404.315 kb on - strand at 404.361 kb on + strand at 404.361 kb on + strand at 404.361 kb on + strand at 404.361 kb on + strand at 404.362 kb on - strand at 404.391 kb on + strand, within HGI48_RS01825 at 404.392 kb on - strand, within HGI48_RS01825 at 404.409 kb on + strand, within HGI48_RS01825 at 404.410 kb on - strand, within HGI48_RS01825 at 404.410 kb on - strand, within HGI48_RS01825 at 404.410 kb on - strand, within HGI48_RS01825 at 404.415 kb on + strand, within HGI48_RS01825 at 404.415 kb on + strand, within HGI48_RS01825 at 404.416 kb on - strand, within HGI48_RS01825 at 404.423 kb on + strand, within HGI48_RS01825 at 404.423 kb on + strand, within HGI48_RS01825 at 404.423 kb on + strand, within HGI48_RS01825 at 404.423 kb on + strand at 404.423 kb on + strand, within HGI48_RS01825 at 404.423 kb on + strand, within HGI48_RS01825 at 404.424 kb on - strand, within HGI48_RS01825 at 404.424 kb on - strand, within HGI48_RS01825 at 404.424 kb on - strand, within HGI48_RS01825 at 404.479 kb on + strand, within HGI48_RS01825 at 404.480 kb on - strand, within HGI48_RS01825 at 404.480 kb on - strand, within HGI48_RS01825 at 404.480 kb on - strand at 404.577 kb on + strand, within HGI48_RS01825 at 404.578 kb on - strand, within HGI48_RS01825 at 404.578 kb on - strand, within HGI48_RS01825 at 404.578 kb on - strand, within HGI48_RS01825 at 404.578 kb on - strand, within HGI48_RS01825 at 404.826 kb on + strand, within HGI48_RS01825 at 404.827 kb on - strand, within HGI48_RS01825 at 404.827 kb on - strand, within HGI48_RS01825 at 404.914 kb on + strand, within HGI48_RS01825 at 404.914 kb on + strand, within HGI48_RS01825 at 404.914 kb on + strand, within HGI48_RS01825 at 404.915 kb on - strand, within HGI48_RS01825 at 404.916 kb on + strand, within HGI48_RS01825 at 404.916 kb on + strand, within HGI48_RS01825 at 404.916 kb on + strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.917 kb on - strand, within HGI48_RS01825 at 404.921 kb on + strand, within HGI48_RS01825 at 404.921 kb on + strand, within HGI48_RS01825 at 404.921 kb on + strand, within HGI48_RS01825 at 404.922 kb on - strand, within HGI48_RS01825 at 404.924 kb on - strand, within HGI48_RS01825 at 405.123 kb on + strand, within HGI48_RS01825 at 405.123 kb on + strand at 405.123 kb on + strand, within HGI48_RS01825 at 405.123 kb on + strand, within HGI48_RS01825 at 405.123 kb on + strand, within HGI48_RS01825 at 405.123 kb on + strand, within HGI48_RS01825 at 405.124 kb on - strand, within HGI48_RS01825 at 405.124 kb on - strand at 405.124 kb on - strand, within HGI48_RS01825 at 405.124 kb on - strand, within HGI48_RS01825 at 405.124 kb on - strand, within HGI48_RS01825 at 405.124 kb on - strand, within HGI48_RS01825 at 405.125 kb on + strand, within HGI48_RS01825 at 405.126 kb on - strand, within HGI48_RS01825 at 405.192 kb on + strand, within HGI48_RS01825 at 405.193 kb on - strand, within HGI48_RS01825 at 405.193 kb on - strand at 405.193 kb on - strand, within HGI48_RS01825 at 405.210 kb on + strand, within HGI48_RS01825 at 405.468 kb on + strand, within HGI48_RS01825 at 405.469 kb on - strand, within HGI48_RS01825 at 405.469 kb on - strand, within HGI48_RS01825 at 405.492 kb on + strand, within HGI48_RS01825 at 405.493 kb on - strand, within HGI48_RS01825 at 405.636 kb on + strand, within HGI48_RS01825 at 405.636 kb on + strand, within HGI48_RS01825 at 405.640 kb on + strand, within HGI48_RS01825 at 405.641 kb on - strand, within HGI48_RS01825 at 405.641 kb on - strand, within HGI48_RS01825 at 405.701 kb on - strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.769 kb on + strand, within HGI48_RS01825 at 405.770 kb on - strand, within HGI48_RS01825 at 405.770 kb on - strand, within HGI48_RS01825 at 405.798 kb on + strand, within HGI48_RS01825 at 405.799 kb on - strand at 405.799 kb on - strand, within HGI48_RS01825 at 405.843 kb on - strand, within HGI48_RS01825 at 405.922 kb on + strand, within HGI48_RS01825 at 405.922 kb on + strand, within HGI48_RS01825 at 405.923 kb on - strand, within HGI48_RS01825 at 405.923 kb on - strand, within HGI48_RS01825 at 405.923 kb on - strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.053 kb on + strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.054 kb on - strand, within HGI48_RS01825 at 406.074 kb on + strand, within HGI48_RS01825 at 406.074 kb on + strand, within HGI48_RS01825 at 406.074 kb on + strand at 406.075 kb on - strand at 406.182 kb on + strand at 406.276 kb on + strand at 406.283 kb on + strand at 406.425 kb on + strand at 406.427 kb on + strand at 406.503 kb on + strand at 406.610 kb on + strand at 406.610 kb on + strand at 406.633 kb on + strand at 406.634 kb on - strand at 406.634 kb on - strand at 406.634 kb on - strand at 406.822 kb on + strand, within HGI48_RS01830 at 406.823 kb on - strand, within HGI48_RS01830 at 406.846 kb on + strand, within HGI48_RS01830 at 406.847 kb on - strand at 406.847 kb on - strand, within HGI48_RS01830 at 406.859 kb on + strand, within HGI48_RS01830 at 406.859 kb on + strand, within HGI48_RS01830 at 406.859 kb on + strand at 406.860 kb on - strand, within HGI48_RS01830 at 406.860 kb on - strand, within HGI48_RS01830 at 406.860 kb on - strand, within HGI48_RS01830 at 406.860 kb on - strand, within HGI48_RS01830 at 406.860 kb on - strand, within HGI48_RS01830 at 406.897 kb on + strand, within HGI48_RS01830 at 406.898 kb on - strand, within HGI48_RS01830 at 407.012 kb on + strand at 407.013 kb on - strand, within HGI48_RS01830 at 407.013 kb on - strand, within HGI48_RS01830 at 407.085 kb on - strand, within HGI48_RS01830 at 407.085 kb on - strand, within HGI48_RS01830 at 407.085 kb on - strand, within HGI48_RS01830 at 407.185 kb on + strand, within HGI48_RS01830 at 407.185 kb on + strand, within HGI48_RS01830 at 407.186 kb on - strand, within HGI48_RS01830 at 407.289 kb on + strand at 407.290 kb on - strand at 407.290 kb on - strand, within HGI48_RS01830 at 407.290 kb on - strand, within HGI48_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 403,296 + HGI48_RS01815 0.68 +2.0 403,296 + HGI48_RS01815 0.68 -1.0 403,298 + HGI48_RS01815 0.69 +1.2 403,298 + HGI48_RS01815 0.69 -1.8 403,298 + HGI48_RS01815 0.69 -2.1 403,298 + HGI48_RS01815 0.69 +0.4 403,299 - +1.5 403,418 + +1.0 403,418 + +0.6 403,418 + -0.0 403,418 + -0.5 403,419 - +0.5 403,460 - +0.1 403,473 + -1.4 403,473 + -0.6 403,473 + +1.0 403,488 + +0.2 403,488 + -2.0 403,489 - -2.2 403,489 - -0.4 403,489 - -1.6 403,503 + +3.5 403,504 - +0.6 403,504 - +0.7 403,504 - -0.5 403,504 - -0.0 403,518 + +1.7 403,519 - -1.9 403,519 - +0.3 403,519 - +2.1 403,533 + -0.6 403,533 + -0.5 403,533 + -0.9 403,533 + +1.1 403,533 + -2.4 403,533 + -0.2 403,533 + +2.5 403,955 + HGI48_RS01820 0.78 -1.4 403,957 + HGI48_RS01820 0.78 +0.9 403,957 + HGI48_RS01820 0.78 -1.8 403,958 - HGI48_RS01820 0.78 -1.3 403,958 - HGI48_RS01820 0.78 -1.8 403,958 - +2.5 403,958 - HGI48_RS01820 0.78 +0.4 403,958 - HGI48_RS01820 0.78 -1.4 404,000 + HGI48_RS01820 0.88 +1.0 404,000 + HGI48_RS01820 0.88 +0.9 404,000 + +1.0 404,000 + HGI48_RS01820 0.88 -0.4 404,000 + HGI48_RS01820 0.88 +0.5 404,000 + HGI48_RS01820 0.88 +1.3 404,000 + HGI48_RS01820 0.88 -0.2 404,001 - HGI48_RS01820 0.88 -2.2 404,001 - HGI48_RS01820 0.88 -1.5 404,001 - HGI48_RS01820 0.88 -0.4 404,001 - HGI48_RS01820 0.88 -1.6 404,001 - HGI48_RS01820 0.88 -1.0 404,041 + +0.4 404,042 - +0.5 404,042 - -0.6 404,042 - -1.6 404,042 - +0.4 404,042 - +1.4 404,042 - -0.0 404,042 - -1.2 404,050 + +0.1 404,050 + +0.4 404,050 + -3.2 404,051 - +0.7 404,051 - +1.2 404,051 - -0.9 404,250 + -2.0 404,314 + -1.5 404,315 - +0.0 404,361 + -1.6 404,361 + +0.2 404,361 + -1.6 404,361 + +1.1 404,362 - -1.8 404,391 + HGI48_RS01825 0.11 -0.4 404,392 - HGI48_RS01825 0.11 -0.2 404,409 + HGI48_RS01825 0.12 +1.2 404,410 - HGI48_RS01825 0.12 +0.7 404,410 - HGI48_RS01825 0.12 +0.1 404,410 - HGI48_RS01825 0.12 +0.4 404,415 + HGI48_RS01825 0.12 +0.5 404,415 + HGI48_RS01825 0.12 -1.0 404,416 - HGI48_RS01825 0.12 +0.4 404,423 + HGI48_RS01825 0.12 -2.6 404,423 + HGI48_RS01825 0.12 -1.8 404,423 + HGI48_RS01825 0.12 -2.0 404,423 + -0.6 404,423 + HGI48_RS01825 0.12 -1.8 404,423 + HGI48_RS01825 0.12 -2.2 404,424 - HGI48_RS01825 0.13 -0.0 404,424 - HGI48_RS01825 0.13 +1.5 404,424 - HGI48_RS01825 0.13 +0.4 404,479 + HGI48_RS01825 0.15 -1.2 404,480 - HGI48_RS01825 0.15 -1.1 404,480 - HGI48_RS01825 0.15 +1.2 404,480 - +4.0 404,577 + HGI48_RS01825 0.20 -0.6 404,578 - HGI48_RS01825 0.20 -0.6 404,578 - HGI48_RS01825 0.20 -1.4 404,578 - HGI48_RS01825 0.20 -0.6 404,578 - HGI48_RS01825 0.20 +1.0 404,826 + HGI48_RS01825 0.31 +1.4 404,827 - HGI48_RS01825 0.31 +0.4 404,827 - HGI48_RS01825 0.31 +1.0 404,914 + HGI48_RS01825 0.35 -0.6 404,914 + HGI48_RS01825 0.35 -0.0 404,914 + HGI48_RS01825 0.35 -1.4 404,915 - HGI48_RS01825 0.35 +0.4 404,916 + HGI48_RS01825 0.36 -2.5 404,916 + HGI48_RS01825 0.36 +1.3 404,916 + HGI48_RS01825 0.36 -1.0 404,917 - HGI48_RS01825 0.36 +0.6 404,917 - +0.4 404,917 - HGI48_RS01825 0.36 +0.1 404,917 - HGI48_RS01825 0.36 +0.6 404,917 - HGI48_RS01825 0.36 -2.4 404,917 - HGI48_RS01825 0.36 -1.4 404,917 - HGI48_RS01825 0.36 -0.7 404,917 - HGI48_RS01825 0.36 -0.5 404,917 - HGI48_RS01825 0.36 +0.9 404,917 - HGI48_RS01825 0.36 -0.8 404,917 - HGI48_RS01825 0.36 -1.3 404,921 + HGI48_RS01825 0.36 +0.2 404,921 + HGI48_RS01825 0.36 +0.6 404,921 + HGI48_RS01825 0.36 -1.6 404,922 - HGI48_RS01825 0.36 -0.0 404,924 - HGI48_RS01825 0.36 +1.2 405,123 + HGI48_RS01825 0.45 -2.4 405,123 + +1.7 405,123 + HGI48_RS01825 0.45 -2.6 405,123 + HGI48_RS01825 0.45 -2.6 405,123 + HGI48_RS01825 0.45 +2.1 405,123 + HGI48_RS01825 0.45 +0.7 405,124 - HGI48_RS01825 0.45 -1.4 405,124 - +2.0 405,124 - HGI48_RS01825 0.45 -0.0 405,124 - HGI48_RS01825 0.45 -1.2 405,124 - HGI48_RS01825 0.45 -1.0 405,124 - HGI48_RS01825 0.45 +0.6 405,125 + HGI48_RS01825 0.45 +2.0 405,126 - HGI48_RS01825 0.45 +1.2 405,192 + HGI48_RS01825 0.48 -0.9 405,193 - HGI48_RS01825 0.48 -1.6 405,193 - -0.6 405,193 - HGI48_RS01825 0.48 +0.2 405,210 + HGI48_RS01825 0.49 -1.6 405,468 + HGI48_RS01825 0.61 +0.3 405,469 - HGI48_RS01825 0.61 +1.0 405,469 - HGI48_RS01825 0.61 +0.8 405,492 + HGI48_RS01825 0.62 -1.4 405,493 - HGI48_RS01825 0.63 -2.0 405,636 + HGI48_RS01825 0.69 -1.4 405,636 + HGI48_RS01825 0.69 +0.1 405,640 + HGI48_RS01825 0.69 +0.4 405,641 - HGI48_RS01825 0.69 +0.8 405,641 - HGI48_RS01825 0.69 +0.2 405,701 - HGI48_RS01825 0.72 -0.5 405,769 + HGI48_RS01825 0.75 +1.0 405,769 + HGI48_RS01825 0.75 -0.0 405,769 + HGI48_RS01825 0.75 +1.0 405,769 + HGI48_RS01825 0.75 -0.1 405,769 + HGI48_RS01825 0.75 +0.8 405,769 + HGI48_RS01825 0.75 +1.0 405,770 - HGI48_RS01825 0.75 +0.5 405,770 - HGI48_RS01825 0.75 +0.5 405,798 + HGI48_RS01825 0.77 -0.4 405,799 - +1.4 405,799 - HGI48_RS01825 0.77 +0.7 405,843 - HGI48_RS01825 0.79 +0.3 405,922 + HGI48_RS01825 0.83 -0.8 405,922 + HGI48_RS01825 0.83 -0.2 405,923 - HGI48_RS01825 0.83 -1.6 405,923 - HGI48_RS01825 0.83 -0.2 405,923 - HGI48_RS01825 0.83 -1.0 406,053 + HGI48_RS01825 0.89 -0.6 406,053 + HGI48_RS01825 0.89 +2.3 406,053 + HGI48_RS01825 0.89 +0.1 406,053 + HGI48_RS01825 0.89 -1.6 406,053 + HGI48_RS01825 0.89 +0.1 406,053 + HGI48_RS01825 0.89 +0.5 406,054 - HGI48_RS01825 0.89 +0.2 406,054 - HGI48_RS01825 0.89 +1.1 406,054 - HGI48_RS01825 0.89 +1.3 406,054 - HGI48_RS01825 0.89 -0.3 406,054 - HGI48_RS01825 0.89 +1.0 406,054 - HGI48_RS01825 0.89 -1.2 406,074 + HGI48_RS01825 0.90 -1.8 406,074 + HGI48_RS01825 0.90 +0.6 406,074 + -0.6 406,075 - -0.0 406,182 + -1.8 406,276 + +0.1 406,283 + -1.4 406,425 + -0.4 406,427 + -0.0 406,503 + -1.6 406,610 + +0.2 406,610 + -0.0 406,633 + -1.4 406,634 - -1.4 406,634 - -1.6 406,634 - -0.4 406,822 + HGI48_RS01830 0.15 -2.0 406,823 - HGI48_RS01830 0.16 -0.4 406,846 + HGI48_RS01830 0.18 -1.4 406,847 - +1.7 406,847 - HGI48_RS01830 0.18 -0.0 406,859 + HGI48_RS01830 0.19 -1.4 406,859 + HGI48_RS01830 0.19 +0.4 406,859 + +2.0 406,860 - HGI48_RS01830 0.20 -1.0 406,860 - HGI48_RS01830 0.20 -1.4 406,860 - HGI48_RS01830 0.20 -0.5 406,860 - HGI48_RS01830 0.20 -1.5 406,860 - HGI48_RS01830 0.20 -1.8 406,897 + HGI48_RS01830 0.24 -1.4 406,898 - HGI48_RS01830 0.24 -1.4 407,012 + +1.0 407,013 - HGI48_RS01830 0.36 -0.7 407,013 - HGI48_RS01830 0.36 +1.3 407,085 - HGI48_RS01830 0.44 -1.0 407,085 - HGI48_RS01830 0.44 -1.0 407,085 - HGI48_RS01830 0.44 -0.6 407,185 + HGI48_RS01830 0.55 -0.3 407,185 + HGI48_RS01830 0.55 -0.6 407,186 - HGI48_RS01830 0.55 -0.6 407,289 + -0.6 407,290 - +1.0 407,290 - HGI48_RS01830 0.67 -0.2 407,290 - HGI48_RS01830 0.67 +1.2
Or see this region's nucleotide sequence