Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01350

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01345 and HGI48_RS01350 are separated by 314 nucleotidesHGI48_RS01350 and HGI48_RS01355 are separated by 103 nucleotides HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938 _RS01345 HGI48_RS01350: HGI48_RS01350 - rod shape-determining protein MreB, at 300,253 to 301,296 _RS01350 HGI48_RS01355: HGI48_RS01355 - rod shape-determining protein MreC, at 301,400 to 302,512 _RS01355 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2 3at 299.304 kb on - strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strandat 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.375 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strandat 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strandat 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.573 kb on - strand, within HGI48_RS01345at 299.573 kb on - strandat 299.592 kb on + strand, within HGI48_RS01345at 299.593 kb on - strandat 299.593 kb on - strand, within HGI48_RS01345at 299.593 kb on - strand, within HGI48_RS01345at 299.666 kb on + strandat 299.667 kb on - strand, within HGI48_RS01345at 299.668 kb on + strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.811 kb on + strandat 299.812 kb on - strandat 299.812 kb on - strandat 299.812 kb on - strandat 299.815 kb on + strandat 299.816 kb on - strandat 299.930 kb on + strandat 299.930 kb on + strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.959 kb on - strandat 299.959 kb on - strandat 299.959 kb on - strandat 299.963 kb on + strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 300.034 kb on + strandat 300.034 kb on + strandat 300.035 kb on - strandat 300.035 kb on - strandat 300.035 kb on - strandat 300.157 kb on + strandat 300.200 kb on + strandat 300.200 kb on + strandat 300.200 kb on + strandat 300.205 kb on + strandat 301.295 kb on - strandat 301.347 kb on + strandat 301.347 kb on + strandat 301.347 kb on + strandat 301.348 kb on - strandat 301.348 kb on - strandat 301.348 kb on - strandat 301.348 kb on - strandat 301.348 kb on - strandat 301.348 kb on - strandat 301.376 kb on + strandat 301.377 kb on - strandat 301.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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299,304 - HGI48_RS01345 0.67 +1.2
299,336 + HGI48_RS01345 0.69 +1.1
299,336 + HGI48_RS01345 0.69 -0.4
299,336 + HGI48_RS01345 0.69 -1.0
299,337 - HGI48_RS01345 0.69 -0.5
299,337 - HGI48_RS01345 0.69 -2.0
299,337 - HGI48_RS01345 0.69 -0.6
299,337 - HGI48_RS01345 0.69 +0.0
299,337 - HGI48_RS01345 0.69 -1.4
299,337 - +1.0
299,337 - HGI48_RS01345 0.69 +0.8
299,337 - HGI48_RS01345 0.69 +2.2
299,337 - HGI48_RS01345 0.69 +1.9
299,375 + HGI48_RS01345 0.71 +1.0
299,570 + HGI48_RS01345 0.81 +0.1
299,570 + HGI48_RS01345 0.81 -1.3
299,570 + HGI48_RS01345 0.81 +0.8
299,570 + HGI48_RS01345 0.81 +0.4
299,570 + HGI48_RS01345 0.81 +1.6
299,570 + HGI48_RS01345 0.81 +1.3
299,571 - HGI48_RS01345 0.81 +0.7
299,571 - +2.2
299,571 - HGI48_RS01345 0.81 -1.8
299,571 - HGI48_RS01345 0.81 -0.7
299,571 - HGI48_RS01345 0.81 +0.6
299,571 - +1.4
299,571 - HGI48_RS01345 0.81 +0.5
299,571 - HGI48_RS01345 0.81 +0.1
299,571 - HGI48_RS01345 0.81 +2.7
299,571 - HGI48_RS01345 0.81 +1.8
299,573 - HGI48_RS01345 0.81 +2.0
299,573 - +2.9
299,592 + HGI48_RS01345 0.82 -2.0
299,593 - +0.0
299,593 - HGI48_RS01345 0.82 +0.9
299,593 - HGI48_RS01345 0.82 +1.3
299,666 + +1.0
299,667 - HGI48_RS01345 0.86 +1.4
299,668 + HGI48_RS01345 0.86 -1.3
299,669 - HGI48_RS01345 0.86 -1.6
299,669 - HGI48_RS01345 0.86 -0.8
299,669 - HGI48_RS01345 0.86 -0.8
299,811 + -1.8
299,812 - +0.7
299,812 - +1.4
299,812 - +0.6
299,815 + +2.3
299,816 - -1.0
299,930 + -1.2
299,930 + -1.3
299,931 - +1.0
299,931 - -2.4
299,931 - -1.6
299,931 - -1.0
299,931 - -0.2
299,931 - +1.4
299,931 - -1.8
299,931 - -1.6
299,959 - -0.6
299,959 - +0.7
299,959 - +1.4
299,963 + -1.8
299,964 - +2.0
299,964 - -0.7
299,964 - +2.6
299,964 - -0.3
299,964 - -1.0
300,034 + -0.7
300,034 + -0.5
300,035 - +1.0
300,035 - -1.8
300,035 - +1.2
300,157 + +0.8
300,200 + -1.3
300,200 + +1.0
300,200 + +1.3
300,205 + -0.2
301,295 - -1.6
301,347 + -2.6
301,347 + -0.6
301,347 + -1.3
301,348 - -1.3
301,348 - -0.8
301,348 - -2.2
301,348 - +0.2
301,348 - -1.0
301,348 - +1.3
301,376 + +0.0
301,377 - +2.4
301,389 + -0.8

Or see this region's nucleotide sequence