Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00860 and HGI48_RS00865 are separated by 24 nucleotides HGI48_RS00865 and HGI48_RS00870 are separated by 60 nucleotides HGI48_RS00870 and HGI48_RS00875 are separated by 214 nucleotides
HGI48_RS00860: HGI48_RS00860 - starvation-sensing protein RspA, at 197,559 to 198,758
_RS00860
HGI48_RS00865: HGI48_RS00865 - GntR family transcriptional regulator, at 198,783 to 199,511
_RS00865
HGI48_RS00870: HGI48_RS00870 - acetylornithine deacetylase, at 199,572 to 200,723
_RS00870
HGI48_RS00875: HGI48_RS00875 - N-acetyl-gamma-glutamyl-phosphate reductase, at 200,938 to 201,942
_RS00875
Position (kb) 199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 198.624 kb on + strand, within HGI48_RS00860 at 198.624 kb on + strand, within HGI48_RS00860 at 198.625 kb on - strand, within HGI48_RS00860 at 198.625 kb on - strand, within HGI48_RS00860 at 198.625 kb on - strand, within HGI48_RS00860 at 198.631 kb on - strand, within HGI48_RS00860 at 198.695 kb on - strand at 198.700 kb on - strand at 198.749 kb on + strand at 198.750 kb on - strand at 198.750 kb on - strand at 198.756 kb on + strand at 198.757 kb on - strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.759 kb on + strand at 198.760 kb on - strand at 198.760 kb on - strand at 198.760 kb on - strand at 198.760 kb on - strand at 198.760 kb on - strand at 198.760 kb on - strand at 198.832 kb on + strand at 198.832 kb on + strand at 198.832 kb on + strand at 198.832 kb on + strand at 198.833 kb on - strand at 198.833 kb on - strand at 198.836 kb on + strand at 198.836 kb on + strand at 198.836 kb on + strand at 198.837 kb on - strand at 198.837 kb on - strand at 198.837 kb on - strand at 198.837 kb on - strand at 198.837 kb on - strand at 198.837 kb on - strand at 198.844 kb on + strand at 198.844 kb on + strand at 198.844 kb on + strand at 198.844 kb on + strand at 198.845 kb on - strand at 198.845 kb on - strand at 198.845 kb on - strand at 198.874 kb on + strand, within HGI48_RS00865 at 198.874 kb on + strand at 198.874 kb on + strand, within HGI48_RS00865 at 198.875 kb on - strand, within HGI48_RS00865 at 198.908 kb on + strand, within HGI48_RS00865 at 198.908 kb on + strand, within HGI48_RS00865 at 198.909 kb on - strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.911 kb on + strand, within HGI48_RS00865 at 198.912 kb on - strand, within HGI48_RS00865 at 198.958 kb on - strand, within HGI48_RS00865 at 198.967 kb on - strand, within HGI48_RS00865 at 199.028 kb on - strand, within HGI48_RS00865 at 199.107 kb on + strand, within HGI48_RS00865 at 199.209 kb on - strand, within HGI48_RS00865 at 199.265 kb on + strand, within HGI48_RS00865 at 199.265 kb on + strand at 199.265 kb on + strand, within HGI48_RS00865 at 199.265 kb on + strand, within HGI48_RS00865 at 199.266 kb on - strand, within HGI48_RS00865 at 199.266 kb on - strand, within HGI48_RS00865 at 199.266 kb on - strand, within HGI48_RS00865 at 199.267 kb on + strand, within HGI48_RS00865 at 199.267 kb on + strand, within HGI48_RS00865 at 199.267 kb on + strand, within HGI48_RS00865 at 199.267 kb on + strand, within HGI48_RS00865 at 199.267 kb on + strand at 199.267 kb on + strand, within HGI48_RS00865 at 199.267 kb on + strand at 199.268 kb on - strand, within HGI48_RS00865 at 199.268 kb on - strand, within HGI48_RS00865 at 199.268 kb on - strand, within HGI48_RS00865 at 199.268 kb on - strand, within HGI48_RS00865 at 199.268 kb on - strand, within HGI48_RS00865 at 199.268 kb on - strand, within HGI48_RS00865 at 199.303 kb on + strand, within HGI48_RS00865 at 199.303 kb on + strand, within HGI48_RS00865 at 199.304 kb on - strand, within HGI48_RS00865 at 199.304 kb on - strand, within HGI48_RS00865 at 199.364 kb on + strand, within HGI48_RS00865 at 199.390 kb on + strand at 199.390 kb on + strand at 199.391 kb on - strand, within HGI48_RS00865 at 199.391 kb on - strand, within HGI48_RS00865 at 199.480 kb on - strand at 199.493 kb on + strand at 199.493 kb on + strand at 199.494 kb on - strand at 199.494 kb on - strand at 199.637 kb on + strand at 199.637 kb on + strand at 199.637 kb on + strand at 199.637 kb on + strand at 199.637 kb on + strand at 199.638 kb on - strand at 199.638 kb on - strand at 199.638 kb on - strand at 199.715 kb on + strand, within HGI48_RS00870 at 199.715 kb on + strand, within HGI48_RS00870 at 199.716 kb on - strand, within HGI48_RS00870 at 199.716 kb on - strand, within HGI48_RS00870 at 199.736 kb on - strand, within HGI48_RS00870 at 199.736 kb on - strand at 199.736 kb on - strand, within HGI48_RS00870 at 199.811 kb on - strand, within HGI48_RS00870 at 199.968 kb on - strand, within HGI48_RS00870 at 200.177 kb on + strand, within HGI48_RS00870 at 200.177 kb on + strand, within HGI48_RS00870 at 200.177 kb on + strand, within HGI48_RS00870 at 200.178 kb on - strand, within HGI48_RS00870 at 200.178 kb on - strand, within HGI48_RS00870 at 200.178 kb on - strand, within HGI48_RS00870 at 200.266 kb on + strand, within HGI48_RS00870 at 200.266 kb on + strand, within HGI48_RS00870 at 200.267 kb on - strand, within HGI48_RS00870 at 200.267 kb on - strand at 200.267 kb on - strand, within HGI48_RS00870 at 200.314 kb on + strand, within HGI48_RS00870 at 200.314 kb on + strand, within HGI48_RS00870 at 200.314 kb on + strand, within HGI48_RS00870 at 200.366 kb on + strand at 200.367 kb on - strand, within HGI48_RS00870 at 200.477 kb on + strand, within HGI48_RS00870 at 200.546 kb on + strand, within HGI48_RS00870 at 200.620 kb on - strand at 200.699 kb on + strand at 200.699 kb on + strand at 200.700 kb on - strand at 200.700 kb on - strand at 200.747 kb on + strand at 200.748 kb on - strand at 200.750 kb on + strand at 200.750 kb on + strand at 200.750 kb on + strand at 200.757 kb on - strand at 200.777 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.811 kb on + strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.812 kb on - strand at 200.841 kb on + strand at 200.841 kb on + strand at 200.910 kb on + strand at 200.910 kb on + strand at 200.910 kb on + strand at 200.910 kb on + strand at 200.911 kb on - strand at 200.911 kb on - strand at 200.911 kb on - strand at 200.911 kb on - strand at 200.911 kb on - strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.926 kb on + strand at 200.926 kb on + strand at 200.926 kb on + strand at 200.926 kb on + strand at 200.946 kb on + strand at 200.946 kb on + strand at 200.971 kb on + strand at 200.996 kb on - strand at 200.996 kb on - strand at 201.023 kb on + strand at 201.024 kb on - strand at 201.093 kb on + strand, within HGI48_RS00875 at 201.093 kb on + strand, within HGI48_RS00875 at 201.094 kb on - strand, within HGI48_RS00875 at 201.094 kb on - strand, within HGI48_RS00875 at 201.102 kb on + strand, within HGI48_RS00875 at 201.174 kb on + strand, within HGI48_RS00875 at 201.200 kb on + strand, within HGI48_RS00875 at 201.200 kb on + strand, within HGI48_RS00875 at 201.201 kb on - strand, within HGI48_RS00875 at 201.201 kb on - strand, within HGI48_RS00875 at 201.277 kb on + strand, within HGI48_RS00875 at 201.277 kb on + strand, within HGI48_RS00875 at 201.278 kb on - strand, within HGI48_RS00875 at 201.287 kb on - strand, within HGI48_RS00875 at 201.290 kb on - strand, within HGI48_RS00875 at 201.334 kb on + strand, within HGI48_RS00875 at 201.335 kb on - strand, within HGI48_RS00875 at 201.335 kb on - strand, within HGI48_RS00875 at 201.716 kb on - strand, within HGI48_RS00875
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 198,624 + HGI48_RS00860 0.89 -0.5 198,624 + HGI48_RS00860 0.89 +2.0 198,625 - HGI48_RS00860 0.89 -2.1 198,625 - HGI48_RS00860 0.89 -0.0 198,625 - HGI48_RS00860 0.89 +0.2 198,631 - HGI48_RS00860 0.89 +0.0 198,695 - -0.5 198,700 - -0.4 198,749 + +1.3 198,750 - -1.2 198,750 - -0.2 198,756 + -0.3 198,757 - -1.8 198,759 + -1.0 198,759 + +2.0 198,759 + +1.6 198,759 + +0.0 198,759 + -0.3 198,759 + -1.3 198,759 + -0.4 198,759 + +2.0 198,760 - +0.5 198,760 - +0.8 198,760 - -1.0 198,760 - +0.1 198,760 - +0.1 198,760 - -1.3 198,832 + +1.3 198,832 + -0.7 198,832 + +0.7 198,832 + +0.7 198,833 - -0.9 198,833 - +1.3 198,836 + -1.8 198,836 + -1.3 198,836 + -0.7 198,837 - +0.9 198,837 - +0.0 198,837 - -0.5 198,837 - +1.0 198,837 - -0.4 198,837 - -1.1 198,844 + +1.2 198,844 + +0.8 198,844 + +0.4 198,844 + -0.2 198,845 - -2.8 198,845 - -0.4 198,845 - +0.5 198,874 + HGI48_RS00865 0.12 +1.9 198,874 + -0.5 198,874 + HGI48_RS00865 0.12 -0.5 198,875 - HGI48_RS00865 0.13 +0.9 198,908 + HGI48_RS00865 0.17 -0.1 198,908 + HGI48_RS00865 0.17 -0.9 198,909 - HGI48_RS00865 0.17 -0.0 198,911 + HGI48_RS00865 0.18 +0.1 198,911 + HGI48_RS00865 0.18 +1.3 198,911 + HGI48_RS00865 0.18 -0.5 198,911 + HGI48_RS00865 0.18 -1.3 198,911 + HGI48_RS00865 0.18 +0.6 198,911 + HGI48_RS00865 0.18 +1.0 198,912 - HGI48_RS00865 0.18 -0.3 198,958 - HGI48_RS00865 0.24 -0.5 198,967 - HGI48_RS00865 0.25 -1.3 199,028 - HGI48_RS00865 0.34 +1.0 199,107 + HGI48_RS00865 0.44 -1.7 199,209 - HGI48_RS00865 0.58 -0.6 199,265 + HGI48_RS00865 0.66 -2.1 199,265 + -0.5 199,265 + HGI48_RS00865 0.66 +0.9 199,265 + HGI48_RS00865 0.66 +0.0 199,266 - HGI48_RS00865 0.66 -1.1 199,266 - HGI48_RS00865 0.66 +0.2 199,266 - HGI48_RS00865 0.66 -0.3 199,267 + HGI48_RS00865 0.66 +0.2 199,267 + HGI48_RS00865 0.66 -3.2 199,267 + HGI48_RS00865 0.66 +0.0 199,267 + HGI48_RS00865 0.66 -0.6 199,267 + +0.5 199,267 + HGI48_RS00865 0.66 -1.0 199,267 + +1.0 199,268 - HGI48_RS00865 0.67 +1.3 199,268 - HGI48_RS00865 0.67 -0.6 199,268 - HGI48_RS00865 0.67 -1.1 199,268 - HGI48_RS00865 0.67 -1.3 199,268 - HGI48_RS00865 0.67 -1.5 199,268 - HGI48_RS00865 0.67 +1.0 199,303 + HGI48_RS00865 0.71 -0.2 199,303 + HGI48_RS00865 0.71 -0.3 199,304 - HGI48_RS00865 0.71 -1.0 199,304 - HGI48_RS00865 0.71 +1.0 199,364 + HGI48_RS00865 0.80 +1.1 199,390 + +2.5 199,390 + +2.8 199,391 - HGI48_RS00865 0.83 +1.0 199,391 - HGI48_RS00865 0.83 +0.0 199,480 - -1.3 199,493 + +3.1 199,493 + -1.0 199,494 - -2.4 199,494 - -0.7 199,637 + -1.0 199,637 + +0.0 199,637 + +1.0 199,637 + +0.0 199,637 + -1.0 199,638 - -0.1 199,638 - +0.0 199,638 - -2.0 199,715 + HGI48_RS00870 0.12 -1.4 199,715 + HGI48_RS00870 0.12 -1.2 199,716 - HGI48_RS00870 0.12 -2.0 199,716 - HGI48_RS00870 0.12 -0.6 199,736 - HGI48_RS00870 0.14 +3.1 199,736 - +0.0 199,736 - HGI48_RS00870 0.14 -1.3 199,811 - HGI48_RS00870 0.21 -1.5 199,968 - HGI48_RS00870 0.34 -2.0 200,177 + HGI48_RS00870 0.53 -1.0 200,177 + HGI48_RS00870 0.53 -0.6 200,177 + HGI48_RS00870 0.53 -1.2 200,178 - HGI48_RS00870 0.53 -2.3 200,178 - HGI48_RS00870 0.53 -1.8 200,178 - HGI48_RS00870 0.53 -1.5 200,266 + HGI48_RS00870 0.60 -3.4 200,266 + HGI48_RS00870 0.60 -3.0 200,267 - HGI48_RS00870 0.60 -4.2 200,267 - +0.0 200,267 - HGI48_RS00870 0.60 +0.0 200,314 + HGI48_RS00870 0.64 -0.5 200,314 + HGI48_RS00870 0.64 -1.3 200,314 + HGI48_RS00870 0.64 +2.0 200,366 + +0.0 200,367 - HGI48_RS00870 0.69 -3.2 200,477 + HGI48_RS00870 0.79 -1.8 200,546 + HGI48_RS00870 0.85 +2.9 200,620 - -1.0 200,699 + -1.3 200,699 + -1.0 200,700 - -1.8 200,700 - -0.3 200,747 + +1.4 200,748 - +0.1 200,750 + +0.0 200,750 + -1.3 200,750 + -0.9 200,757 - +1.4 200,777 + +0.6 200,811 + +0.6 200,811 + -1.9 200,811 + +1.0 200,811 + -2.0 200,811 + +0.5 200,811 + +0.3 200,811 + +2.0 200,811 + +1.6 200,812 - -0.5 200,812 - -1.0 200,812 - -0.8 200,812 - -2.0 200,812 - +3.4 200,812 - -1.2 200,812 - -1.0 200,841 + +0.6 200,841 + +0.5 200,910 + +1.0 200,910 + -1.5 200,910 + -0.9 200,910 + -2.8 200,911 - -2.8 200,911 - -1.8 200,911 - +0.3 200,911 - +1.3 200,911 - +1.3 200,920 + +3.3 200,920 + +0.3 200,920 + -0.1 200,921 - -0.5 200,921 - -1.0 200,926 + -1.8 200,926 + +0.7 200,926 + -1.3 200,926 + -0.5 200,946 + +0.9 200,946 + -1.8 200,971 + -0.1 200,996 - +0.0 200,996 - -2.7 201,023 + +0.0 201,024 - +0.0 201,093 + HGI48_RS00875 0.15 -2.8 201,093 + HGI48_RS00875 0.15 -1.0 201,094 - HGI48_RS00875 0.16 +0.2 201,094 - HGI48_RS00875 0.16 +0.2 201,102 + HGI48_RS00875 0.16 -3.2 201,174 + HGI48_RS00875 0.23 -1.5 201,200 + HGI48_RS00875 0.26 -0.8 201,200 + HGI48_RS00875 0.26 -2.9 201,201 - HGI48_RS00875 0.26 -0.3 201,201 - HGI48_RS00875 0.26 -0.8 201,277 + HGI48_RS00875 0.34 -1.3 201,277 + HGI48_RS00875 0.34 -2.3 201,278 - HGI48_RS00875 0.34 -1.5 201,287 - HGI48_RS00875 0.35 +1.0 201,290 - HGI48_RS00875 0.35 -3.1 201,334 + HGI48_RS00875 0.39 +0.9 201,335 - HGI48_RS00875 0.40 -1.0 201,335 - HGI48_RS00875 0.40 +2.1 201,716 - HGI48_RS00875 0.77 -1.0
Or see this region's nucleotide sequence