Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00600

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
141,734	+				+0.2
141,734	+				-0.5
141,734	+				-1.8
141,734	+				-0.9
141,735	-				+0.4
141,735	-				+0.5
141,809	+				+1.2
141,809	+				+0.5
141,809	+				+0.6
141,809	+				+0.3
141,809	+				+1.3
141,809	+				+0.8
141,810	-				-1.8
141,810	-				-0.5
141,810	-				-0.8
141,810	-				-0.4
141,810	-				-1.5
141,810	-				-1.3
141,811	+				+0.1
141,811	+				-0.3
141,811	+				-2.3
141,811	+				-2.5
141,812	-				-1.8
141,812	-				-1.5
141,812	-				-0.1
141,812	-				+0.5
141,812	-				-1.5
141,812	-				-1.5
141,812	-				-0.4
141,812	-				-0.4
141,812	-				+1.3
141,812	-				+0.6
141,848	+				-0.5
141,851	+				+0.8
141,877	+				-0.5
141,877	+				-0.4
141,877	+				-2.8
141,877	+				-0.8
141,877	+				-1.3
141,878	-				-0.8
141,878	-				-0.5
141,878	-				+0.5
141,878	-				-0.3
141,878	-				-0.9
141,878	-				-2.8
141,881	-				+0.1
141,903	-				-1.9
141,903	-				+0.2
141,962	-		HGI48_RS00595	0.13	+0.7
141,962	-		HGI48_RS00595	0.13	+1.1
141,991	+		HGI48_RS00595	0.16	-2.1
142,133	+		HGI48_RS00595	0.35	-1.8
142,135	+		HGI48_RS00595	0.35	+1.5
142,135	+		HGI48_RS00595	0.35	+1.8
142,136	-		HGI48_RS00595	0.35	+0.6
142,136	-		HGI48_RS00595	0.35	-0.4
142,154	+		HGI48_RS00595	0.38	-0.4
142,155	-		HGI48_RS00595	0.38	+0.1
142,155	-		HGI48_RS00595	0.38	+1.1
142,232	-		HGI48_RS00595	0.48	+0.7
142,241	-		HGI48_RS00595	0.49	+0.6
142,286	+				+0.5
142,286	+		HGI48_RS00595	0.55	+0.7
142,286	+		HGI48_RS00595	0.55	-0.3
142,287	-		HGI48_RS00595	0.55	-1.8
142,287	-		HGI48_RS00595	0.55	+1.1
142,306	+		HGI48_RS00595	0.58	+0.1
142,343	+		HGI48_RS00595	0.62	-0.1
142,343	+				-0.5
142,344	-				-0.5
142,344	-		HGI48_RS00595	0.62	-0.5
142,344	-				+1.1
142,344	-		HGI48_RS00595	0.62	-0.6
142,344	-		HGI48_RS00595	0.62	-0.1
142,344	-		HGI48_RS00595	0.62	-1.3
142,344	-		HGI48_RS00595	0.62	-2.1
142,397	+		HGI48_RS00595	0.69	-1.4
142,397	+				+3.9
142,398	-		HGI48_RS00595	0.70	+0.6
142,398	-		HGI48_RS00595	0.70	-1.9
142,426	+		HGI48_RS00595	0.73	-0.5
142,426	+		HGI48_RS00595	0.73	-0.5
142,427	-		HGI48_RS00595	0.73	-0.9
142,427	-		HGI48_RS00595	0.73	+0.7
142,427	-		HGI48_RS00595	0.73	-1.5
142,430	+		HGI48_RS00595	0.74	+0.9
142,430	+		HGI48_RS00595	0.74	-0.1
142,430	+		HGI48_RS00595	0.74	-0.9
142,431	-		HGI48_RS00595	0.74	-0.3
142,431	-		HGI48_RS00595	0.74	-1.1
142,452	-		HGI48_RS00595	0.77	-2.1
142,496	+		HGI48_RS00595	0.82	+2.7
142,674	+				+0.5
142,674	+				-0.9
142,674	+				-1.3
142,674	+				-0.5
142,674	+				-1.3
142,675	-				+1.4
142,675	-				+1.6
142,675	-				+0.6
142,675	-				+1.2
142,675	-				+1.1
142,675	-				+0.1
142,678	+				-0.3
142,678	+				+1.5
142,678	+				-0.4
142,678	+				+1.9
142,679	-				-1.1
142,679	-				+0.8
142,679	-				-1.5
142,689	+				+0.2
142,690	-				+0.0
142,755	+				+1.5
142,756	-				+0.2
142,756	-				-1.5
142,803	+		HGI48_RS00600	0.11	-0.3
142,815	+		HGI48_RS00600	0.13	-1.3
142,844	-		HGI48_RS00600	0.17	-1.5
142,891	+		HGI48_RS00600	0.24	+0.8
143,085	-		HGI48_RS00600	0.51	+0.6
143,092	+				-0.5
143,092	+		HGI48_RS00600	0.52	-1.9
143,093	-				-0.5
143,296	+		HGI48_RS00600	0.81	-1.3
143,297	-		HGI48_RS00600	0.81	+1.7
143,336	-		HGI48_RS00600	0.86	-0.8
143,344	-		HGI48_RS00600	0.87	-0.5
143,377	+				-1.5
143,377	+				-0.9
143,377	+				-2.4
143,377	+				-1.5
143,378	-				+1.5
143,413	-				+1.1
143,413	-				-0.6
143,533	+				-0.2
143,533	+				-1.8
143,534	-				-0.8
143,534	-				-1.8
143,534	-				-0.3
143,534	-				+1.5
143,534	-				-2.6
143,537	+				-2.1
143,537	+				-1.9
143,537	+				-1.1
143,537	+				-0.9
143,537	+				-0.2
143,538	-				+1.1
143,538	-				+0.2
143,611	+		HGI48_RS00605	0.15	-0.9
143,621	+		HGI48_RS00605	0.16	+0.2
143,621	+		HGI48_RS00605	0.16	-0.9
143,621	+		HGI48_RS00605	0.16	-0.2
143,621	+		HGI48_RS00605	0.16	-0.9
143,621	+		HGI48_RS00605	0.16	+2.2
143,621	+		HGI48_RS00605	0.16	-0.9
143,622	-		HGI48_RS00605	0.16	-0.9
143,779	+		HGI48_RS00605	0.29	+0.9
143,779	+		HGI48_RS00605	0.29	+0.1
143,780	-		HGI48_RS00605	0.29	-0.3
143,780	-		HGI48_RS00605	0.29	-0.5
143,798	+				-0.5
143,799	-		HGI48_RS00605	0.30	+0.8
143,816	+		HGI48_RS00605	0.32	+1.9
143,845	+		HGI48_RS00605	0.34	-1.5
143,845	+		HGI48_RS00605	0.34	+0.8
143,846	-		HGI48_RS00605	0.34	-1.9
143,846	-		HGI48_RS00605	0.34	+1.3
143,851	+		HGI48_RS00605	0.35	-0.8
143,852	-		HGI48_RS00605	0.35	-1.0
143,878	-		HGI48_RS00605	0.37	-0.6
143,878	-				-0.5
143,878	-		HGI48_RS00605	0.37	-2.3
143,878	-				-0.5
143,878	-		HGI48_RS00605	0.37	-0.1
144,107	+		HGI48_RS00605	0.56	-1.3
144,115	+		HGI48_RS00605	0.56	+0.1
144,115	+		HGI48_RS00605	0.56	-2.3
144,115	+		HGI48_RS00605	0.56	-2.8
144,115	+		HGI48_RS00605	0.56	+0.9
144,115	+		HGI48_RS00605	0.56	-1.1
144,115	+		HGI48_RS00605	0.56	+1.1
144,176	-		HGI48_RS00605	0.61	-0.1
144,176	-		HGI48_RS00605	0.61	-1.5
144,176	-		HGI48_RS00605	0.61	-1.8
144,176	-		HGI48_RS00605	0.61	-0.3
144,292	+		HGI48_RS00605	0.71	-0.5
144,293	-		HGI48_RS00605	0.71	-2.1
144,293	-		HGI48_RS00605	0.71	-0.9
144,293	-		HGI48_RS00605	0.71	+2.2
144,293	-		HGI48_RS00605	0.71	+1.1
144,371	-		HGI48_RS00605	0.77	-0.7
144,371	-		HGI48_RS00605	0.77	+0.2
144,371	-		HGI48_RS00605	0.77	-2.1