Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19535

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,361,395	+		HGI48_RS19525	0.82	+1.1
4,361,396	-		HGI48_RS19525	0.82	-1.2
4,361,456	+		HGI48_RS19525	0.86	-1.2
4,361,457	-		HGI48_RS19525	0.86	-1.2
4,361,507	+		HGI48_RS19525	0.88	+0.2
4,361,524	-				+0.2
4,361,565	+				-1.5
4,361,565	+				-2.0
4,361,565	+				+2.1
4,361,565	+				+1.8
4,361,566	-				+0.4
4,361,566	-				+0.1
4,361,760	+				-0.4
4,361,839	+		HGI48_RS19530	0.22	-1.5
4,361,873	+		HGI48_RS19530	0.28	+1.3
4,361,873	+		HGI48_RS19530	0.28	-1.5
4,361,873	+		HGI48_RS19530	0.28	+0.6
4,361,873	+		HGI48_RS19530	0.28	+0.0
4,361,873	+		HGI48_RS19530	0.28	+1.0
4,361,874	-		HGI48_RS19530	0.28	-0.4
4,361,874	-		HGI48_RS19530	0.28	-0.2
4,361,874	-		HGI48_RS19530	0.28	-0.2
4,361,876	+		HGI48_RS19530	0.29	+1.7
4,361,876	+		HGI48_RS19530	0.29	-2.0
4,361,876	+				-0.8
4,361,877	-		HGI48_RS19530	0.29	-0.3
4,361,877	-		HGI48_RS19530	0.29	-1.5
4,361,877	-		HGI48_RS19530	0.29	-1.8
4,361,877	-		HGI48_RS19530	0.29	-1.1
4,362,051	+		HGI48_RS19530	0.61	+0.6
4,362,051	+		HGI48_RS19530	0.61	-0.3
4,362,051	+		HGI48_RS19530	0.61	+0.6
4,362,051	+		HGI48_RS19530	0.61	+0.7
4,362,051	+		HGI48_RS19530	0.61	-3.3
4,362,051	+				+0.8
4,362,051	+		HGI48_RS19530	0.61	-0.8
4,362,052	-		HGI48_RS19530	0.61	-2.5
4,362,052	-		HGI48_RS19530	0.61	-0.1
4,362,052	-				+0.8
4,362,052	-		HGI48_RS19530	0.61	-0.2
4,362,052	-		HGI48_RS19530	0.61	-2.6
4,362,052	-		HGI48_RS19530	0.61	-2.3
4,362,052	-		HGI48_RS19530	0.61	-0.9
4,362,052	-		HGI48_RS19530	0.61	-1.8
4,362,052	-		HGI48_RS19530	0.61	-0.2
4,362,052	-		HGI48_RS19530	0.61	-1.2
4,362,052	-		HGI48_RS19530	0.61	+0.4
4,362,052	-		HGI48_RS19530	0.61	+1.0
4,362,052	-		HGI48_RS19530	0.61	-3.2
4,362,052	-		HGI48_RS19530	0.61	-2.5
4,362,052	-		HGI48_RS19530	0.61	+0.5
4,362,055	+		HGI48_RS19530	0.61	-0.0
4,362,055	+		HGI48_RS19530	0.61	+1.6
4,362,055	+		HGI48_RS19530	0.61	-2.0
4,362,056	-		HGI48_RS19530	0.61	+0.6
4,362,057	+		HGI48_RS19530	0.62	+0.8
4,362,058	-		HGI48_RS19530	0.62	-0.5
4,362,058	-		HGI48_RS19530	0.62	+1.2
4,362,075	-		HGI48_RS19530	0.65	+0.1
4,362,075	-		HGI48_RS19530	0.65	+3.0
4,362,075	-		HGI48_RS19530	0.65	+0.5
4,362,075	-		HGI48_RS19530	0.65	-1.8
4,362,118	+		HGI48_RS19530	0.73	-2.6
4,362,138	+		HGI48_RS19530	0.76	-0.3
4,362,139	-		HGI48_RS19530	0.76	-2.0
4,362,147	+		HGI48_RS19530	0.78	+0.1
4,362,191	+		HGI48_RS19530	0.86	-2.8
4,362,191	+		HGI48_RS19530	0.86	+0.6
4,362,191	+		HGI48_RS19530	0.86	-0.3
4,362,191	+		HGI48_RS19530	0.86	-0.2
4,362,192	-		HGI48_RS19530	0.86	+1.6
4,362,192	-		HGI48_RS19530	0.86	+0.0
4,362,192	-		HGI48_RS19530	0.86	-1.2
4,362,194	+		HGI48_RS19530	0.86	-0.8
4,362,194	+		HGI48_RS19530	0.86	+0.8
4,362,195	-		HGI48_RS19530	0.87	-2.2
4,362,195	-		HGI48_RS19530	0.87	-0.2
4,362,195	-		HGI48_RS19530	0.87	+0.0
4,362,195	-		HGI48_RS19530	0.87	-1.1
4,362,195	-				+1.2
4,362,197	+		HGI48_RS19530	0.87	+0.6
4,362,197	+		HGI48_RS19530	0.87	-1.5
4,362,197	+		HGI48_RS19530	0.87	+1.3
4,362,197	+		HGI48_RS19530	0.87	+0.3
4,362,197	+		HGI48_RS19530	0.87	-1.1
4,362,197	+		HGI48_RS19530	0.87	-1.2
4,362,198	-		HGI48_RS19530	0.87	-2.1
4,362,198	-		HGI48_RS19530	0.87	+0.5
4,362,198	-		HGI48_RS19530	0.87	-1.5
4,362,202	+		HGI48_RS19530	0.88	+0.4
4,362,202	+		HGI48_RS19530	0.88	-0.6
4,362,327	+				+0.2
4,362,327	+				-1.2
4,362,327	+				-0.4
4,362,327	+				+0.4
4,362,327	+				+1.6
4,362,327	+				-2.2
4,362,328	-				+1.5
4,362,328	-				-2.0
4,362,328	-				-2.0
4,362,328	-				+0.2
4,362,372	+				+1.3
4,362,372	+				-0.0
4,362,373	-				-0.6
4,362,373	-				-1.3
4,362,373	-				-1.3
4,362,373	-				-0.5
4,362,373	-				-1.2
4,362,392	+				-1.6
4,362,524	-				-2.3
4,362,524	-				-0.7
4,362,639	+		HGI48_RS19535	0.13	+1.8
4,362,639	+		HGI48_RS19535	0.13	+1.2
4,362,639	+		HGI48_RS19535	0.13	+1.2
4,362,640	-		HGI48_RS19535	0.13	-1.5
4,362,640	-		HGI48_RS19535	0.13	-0.6
4,362,640	-		HGI48_RS19535	0.13	-1.0
4,362,975	+				-0.2
4,362,995	+		HGI48_RS19535	0.31	+2.5
4,362,995	+		HGI48_RS19535	0.31	-1.2
4,362,996	-		HGI48_RS19535	0.31	-0.3
4,362,996	-		HGI48_RS19535	0.31	-0.6
4,362,996	-		HGI48_RS19535	0.31	+1.0
4,363,071	+		HGI48_RS19535	0.35	-0.8
4,363,072	-		HGI48_RS19535	0.35	-1.5
4,363,083	+		HGI48_RS19535	0.36	-0.8
4,363,083	+		HGI48_RS19535	0.36	+0.4
4,363,083	+		HGI48_RS19535	0.36	-2.3
4,363,083	+		HGI48_RS19535	0.36	-1.2
4,363,084	-				-0.8
4,363,084	-		HGI48_RS19535	0.36	-2.2
4,363,084	-		HGI48_RS19535	0.36	+0.8
4,363,084	-		HGI48_RS19535	0.36	-0.5
4,363,137	+		HGI48_RS19535	0.39	+0.1
4,363,137	+		HGI48_RS19535	0.39	-1.0
4,363,138	-		HGI48_RS19535	0.39	-1.2
4,363,138	-		HGI48_RS19535	0.39	-1.8
4,363,138	-		HGI48_RS19535	0.39	+0.5
4,363,138	-		HGI48_RS19535	0.39	+1.2
4,363,138	-				+1.6
4,363,138	-		HGI48_RS19535	0.39	-0.4
4,363,138	-		HGI48_RS19535	0.39	-1.4
4,363,138	-		HGI48_RS19535	0.39	+1.0
4,363,138	-		HGI48_RS19535	0.39	+4.4
4,363,176	+				+2.4
4,363,176	+		HGI48_RS19535	0.41	+1.2
4,363,176	+		HGI48_RS19535	0.41	-0.5
4,363,177	-		HGI48_RS19535	0.41	-1.5
4,363,177	-		HGI48_RS19535	0.41	+0.2
4,363,177	-		HGI48_RS19535	0.41	-0.9
4,363,630	-		HGI48_RS19535	0.64	+1.2
4,363,884	+		HGI48_RS19535	0.78	+0.1
4,363,884	+		HGI48_RS19535	0.78	+1.3
4,363,884	+		HGI48_RS19535	0.78	-2.5
4,363,885	-		HGI48_RS19535	0.78	-1.5
4,363,885	-		HGI48_RS19535	0.78	-1.8
4,363,936	-		HGI48_RS19535	0.80	+0.7
4,364,054	-		HGI48_RS19535	0.87	-1.2
4,364,054	-				-0.8
4,364,054	-				+1.6
4,364,054	-		HGI48_RS19535	0.87	-0.5
4,364,166	+				+0.2
4,364,166	+				+0.0
4,364,166	+				-0.3
4,364,166	+				-1.0
4,364,284	+				+0.5
4,364,311	-				-0.4
4,364,311	-				-1.8
4,364,379	+				-0.9
4,364,380	-				-0.2
4,364,380	-				+0.7
4,364,577	+		HGI48_RS19540	0.30	-0.6
4,364,578	-		HGI48_RS19540	0.30	-0.8
4,364,667	+		HGI48_RS19540	0.45	+1.0
4,364,715	+				-0.2
4,364,715	+		HGI48_RS19540	0.53	+0.7
4,364,715	+		HGI48_RS19540	0.53	+0.6
4,364,715	+		HGI48_RS19540	0.53	-1.8
4,364,754	+		HGI48_RS19540	0.59	+0.3
4,364,754	+		HGI48_RS19540	0.59	+0.8
4,364,754	+		HGI48_RS19540	0.59	-2.2
4,364,754	+		HGI48_RS19540	0.59	+0.1
4,364,755	-		HGI48_RS19540	0.59	+1.9
4,364,755	-		HGI48_RS19540	0.59	-0.9
4,364,755	-				+1.2
4,364,755	-				+1.6
4,364,755	-				+2.8
4,364,881	+		HGI48_RS19540	0.80	-0.2
4,364,881	+		HGI48_RS19540	0.80	-0.2
4,364,881	+		HGI48_RS19540	0.80	-0.2
4,364,882	-		HGI48_RS19540	0.80	-1.8
4,364,882	-		HGI48_RS19540	0.80	-0.8
4,364,891	+		HGI48_RS19540	0.82	+2.0
4,364,892	-		HGI48_RS19540	0.82	+0.4
4,364,921	+		HGI48_RS19540	0.87	-0.7
4,364,921	+		HGI48_RS19540	0.87	-3.1
4,364,921	+				-0.8
4,364,921	+		HGI48_RS19540	0.87	-0.5
4,364,921	+		HGI48_RS19540	0.87	-0.5
4,364,921	+		HGI48_RS19540	0.87	+0.0
4,364,922	-		HGI48_RS19540	0.87	-1.2
4,364,922	-		HGI48_RS19540	0.87	-1.8
4,364,922	-		HGI48_RS19540	0.87	-2.2
4,364,922	-		HGI48_RS19540	0.87	-1.2
4,364,922	-		HGI48_RS19540	0.87	+0.4
4,364,922	-		HGI48_RS19540	0.87	-0.2
4,364,922	-		HGI48_RS19540	0.87	-1.2
4,364,922	-		HGI48_RS19540	0.87	-1.2
4,364,922	-		HGI48_RS19540	0.87	-1.5
4,364,922	-		HGI48_RS19540	0.87	+0.1
4,364,922	-		HGI48_RS19540	0.87	+0.5
4,364,922	-		HGI48_RS19540	0.87	-2.3
4,364,922	-		HGI48_RS19540	0.87	-0.6
4,364,926	+		HGI48_RS19540	0.87	+0.8
4,364,926	+		HGI48_RS19540	0.87	+0.8
4,364,926	+		HGI48_RS19540	0.87	-0.1
4,364,926	+		HGI48_RS19540	0.87	-2.6
4,364,926	+		HGI48_RS19540	0.87	-0.9
4,364,927	-		HGI48_RS19540	0.88	-0.2
4,364,927	-		HGI48_RS19540	0.88	-0.2
4,364,927	-		HGI48_RS19540	0.88	-1.5
4,364,927	-				-0.8
4,364,927	-		HGI48_RS19540	0.88	+0.6
4,364,927	-				+1.6
4,364,927	-		HGI48_RS19540	0.88	-0.9
4,364,927	-		HGI48_RS19540	0.88	+0.6
4,364,929	+		HGI48_RS19540	0.88	-1.0
4,364,930	-		HGI48_RS19540	0.88	-1.8
4,364,930	-		HGI48_RS19540	0.88	-1.5
4,364,930	-		HGI48_RS19540	0.88	+1.0
4,365,039	+				+0.6
4,365,039	+				+0.8
4,365,039	+				-2.5
4,365,040	-				+0.2
4,365,040	-				-2.9
4,365,052	+				+0.2
4,365,052	+				-0.2
4,365,053	-				-1.2
4,365,073	+				-0.9
4,365,074	-				-0.1
4,365,142	-				-0.3
4,365,157	-		HGI48_RS19545	0.18	-1.2
4,365,157	-		HGI48_RS19545	0.18	-1.5
4,365,245	+				-0.3
4,365,245	+				-1.8
4,365,245	+				-1.8
4,365,245	+				-1.8
4,365,246	-				-1.1
4,365,246	-				+0.0
4,365,293	-				-1.9
4,365,307	+				-2.0