Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15545

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,494,724	-		HGI48_RS15540	0.37	+0.5
3,494,724	-		HGI48_RS15540	0.37	-0.5
3,494,847	+		HGI48_RS15540	0.46	-1.3
3,494,847	+		HGI48_RS15540	0.46	-0.9
3,494,848	-		HGI48_RS15540	0.46	-0.1
3,494,882	-		HGI48_RS15540	0.48	-0.4
3,495,068	+		HGI48_RS15540	0.62	-0.2
3,495,068	+		HGI48_RS15540	0.62	-0.8
3,495,069	-		HGI48_RS15540	0.62	+0.4
3,495,069	-				+0.5
3,495,069	-		HGI48_RS15540	0.62	-2.8
3,495,069	-		HGI48_RS15540	0.62	-2.5
3,495,071	+		HGI48_RS15540	0.62	-1.3
3,495,072	-		HGI48_RS15540	0.62	-1.5
3,495,072	-				-0.5
3,495,072	-		HGI48_RS15540	0.62	-1.8
3,495,072	-		HGI48_RS15540	0.62	+0.1
3,495,072	-		HGI48_RS15540	0.62	+0.2
3,495,210	+		HGI48_RS15540	0.72	+1.7
3,495,210	+		HGI48_RS15540	0.72	-1.5
3,495,211	-				+0.9
3,495,211	-		HGI48_RS15540	0.72	-2.3
3,495,211	-		HGI48_RS15540	0.72	-1.8
3,495,300	+		HGI48_RS15540	0.79	+1.4
3,495,301	-		HGI48_RS15540	0.79	+0.3
3,495,346	+		HGI48_RS15540	0.82	-1.1
3,495,347	-		HGI48_RS15540	0.82	-0.4
3,495,425	+		HGI48_RS15540	0.88	-0.7
3,495,556	+				-1.5
3,495,589	+				-1.1
3,495,607	+				-1.1
3,495,607	+				+0.7
3,495,607	+				-2.5
3,495,607	+				+2.4
3,495,607	+				-0.3
3,495,608	-				+0.7
3,495,608	-				-1.1
3,495,608	-				-1.1
3,495,608	-				-1.8
3,495,608	-				-1.8
3,495,608	-				-2.1
3,495,608	-				+1.6
3,495,608	-				+0.5
3,495,608	-				+0.2
3,495,608	-				+0.5
3,495,621	+				-0.2
3,495,622	-				-1.5
3,495,622	-				-0.9
3,495,630	+				+0.8
3,495,631	-				-0.3
3,495,644	+				-1.1
3,495,645	-				+1.1
3,495,645	-				+0.5
3,495,648	-				-1.1
3,495,648	-				-0.3
3,495,673	+				-1.5
3,495,673	+				+0.3
3,495,673	+				-1.8
3,495,673	+				+0.4
3,495,673	+				-1.0
3,495,686	+				-0.2
3,495,686	+				+0.9
3,495,686	+				-0.8
3,495,686	+				+1.1
3,495,686	+				+0.5
3,495,686	+				+2.5
3,495,687	-				+0.0
3,495,687	-				-2.1
3,495,687	-				+0.4
3,495,687	-				-1.5
3,495,687	-				-2.8
3,495,687	-				-0.0
3,495,687	-				-1.9
3,495,717	+				-0.6
3,495,717	+				-3.1
3,495,717	+				-1.3
3,495,718	-				-0.2
3,495,718	-				+0.7
3,495,719	+				-0.3
3,495,719	+				-0.9
3,495,720	-				+1.2
3,495,720	-				+0.1
3,495,734	+				+0.3
3,495,735	-				-0.6
3,495,735	-				-1.8
3,495,736	+				-1.8
3,495,736	+				-1.8
3,495,736	+				-0.1
3,495,737	-				+0.0
3,495,737	-				+0.0
3,495,851	+		HGI48_RS15545	0.16	-0.5
3,495,870	+		HGI48_RS15545	0.17	-2.1
3,495,871	-		HGI48_RS15545	0.18	-0.8
3,495,960	+		HGI48_RS15545	0.26	-2.1
3,495,960	+		HGI48_RS15545	0.26	+1.1
3,495,966	+				+0.5
3,495,977	+		HGI48_RS15545	0.28	+0.5
3,495,978	-		HGI48_RS15545	0.28	-2.5
3,495,978	-		HGI48_RS15545	0.28	-2.0
3,495,978	-		HGI48_RS15545	0.28	-2.3
3,495,978	-		HGI48_RS15545	0.28	+1.4
3,495,978	-				+0.5
3,495,978	-		HGI48_RS15545	0.28	+0.5
3,496,126	+		HGI48_RS15545	0.42	+0.7
3,496,126	+		HGI48_RS15545	0.42	-3.1
3,496,199	+		HGI48_RS15545	0.49	+0.2
3,496,200	-		HGI48_RS15545	0.49	-3.2
3,496,200	-		HGI48_RS15545	0.49	+0.8
3,496,200	-				+1.5
3,496,209	+		HGI48_RS15545	0.50	-0.8
3,496,209	+				-1.1
3,496,210	-		HGI48_RS15545	0.50	+1.7
3,496,210	-		HGI48_RS15545	0.50	+0.8
3,496,210	-		HGI48_RS15545	0.50	+0.8
3,496,210	-		HGI48_RS15545	0.50	+1.0
3,496,262	+		HGI48_RS15545	0.55	-0.5
3,496,262	+				-0.5
3,496,263	-		HGI48_RS15545	0.55	-0.3
3,496,275	+		HGI48_RS15545	0.56	-1.0
3,496,275	+		HGI48_RS15545	0.56	-1.1
3,496,275	+		HGI48_RS15545	0.56	-0.2
3,496,276	-		HGI48_RS15545	0.56	-0.8
3,496,276	-				+1.1
3,496,276	-		HGI48_RS15545	0.56	-0.7
3,496,276	-		HGI48_RS15545	0.56	+1.2
3,496,278	+				+2.7
3,496,294	+		HGI48_RS15545	0.58	+1.5
3,496,295	-		HGI48_RS15545	0.58	-0.1
3,496,295	-		HGI48_RS15545	0.58	-2.5
3,496,445	+				+2.1
3,496,503	+		HGI48_RS15545	0.78	-1.8
3,496,503	+		HGI48_RS15545	0.78	-1.6
3,496,503	+		HGI48_RS15545	0.78	-0.7
3,496,504	-		HGI48_RS15545	0.78	-1.5
3,496,504	-		HGI48_RS15545	0.78	+0.2
3,496,504	-		HGI48_RS15545	0.78	-0.2
3,496,504	-		HGI48_RS15545	0.78	-0.6
3,496,504	-		HGI48_RS15545	0.78	+0.3
3,496,554	-		HGI48_RS15545	0.83	-0.2
3,496,565	+		HGI48_RS15545	0.84	-0.5
3,496,566	-		HGI48_RS15545	0.84	-1.1
3,496,622	+		HGI48_RS15545	0.89	-2.1
3,496,715	+				-2.5
3,496,715	+				+0.9
3,496,716	-				-0.3
3,496,735	-				-2.3
3,497,109	+				-0.6
3,497,110	-				-0.6
3,497,113	+				-0.7
3,497,113	+				-1.8
3,497,113	+				-0.4
3,497,113	+				+0.3
3,497,113	+				-2.3
3,497,113	+				+0.5
3,497,113	+				+1.1
3,497,113	+				+0.4
3,497,114	-				+0.6
3,497,114	-				-1.6
3,497,114	-				-0.1
3,497,114	-				+0.1
3,497,114	-				+0.7
3,497,114	-				-1.9
3,497,121	-				+2.4
3,497,134	+				-2.3
3,497,135	-				-1.2
3,497,135	-				+1.2
3,497,149	-				+0.3
3,497,182	+				+0.2
3,497,183	-				+1.2
3,497,183	-				+1.0
3,497,213	+				+0.5
3,497,213	+				+0.3
3,497,213	+				+0.2
3,497,214	-				-1.1
3,497,214	-				-1.8
3,497,214	-				-0.2
3,497,214	-				+0.4
3,497,214	-				-1.6
3,497,214	-				-1.9
3,497,214	-				+0.1