Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14880

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,355,503	-		HGI48_RS14875	0.27	-0.2
3,355,503	-		HGI48_RS14875	0.27	-1.5
3,355,536	-		HGI48_RS14875	0.30	+0.0
3,355,538	+		HGI48_RS14875	0.31	-1.0
3,355,538	+		HGI48_RS14875	0.31	-0.3
3,355,539	-		HGI48_RS14875	0.31	-1.9
3,355,539	-		HGI48_RS14875	0.31	-0.5
3,355,539	-		HGI48_RS14875	0.31	+1.1
3,355,539	-				+1.5
3,355,569	+		HGI48_RS14875	0.34	+1.6
3,355,569	+		HGI48_RS14875	0.34	-2.1
3,355,569	+		HGI48_RS14875	0.34	+0.3
3,355,570	-		HGI48_RS14875	0.34	-0.3
3,355,570	-		HGI48_RS14875	0.34	+1.1
3,355,570	-		HGI48_RS14875	0.34	+0.2
3,355,828	+		HGI48_RS14875	0.60	-0.4
3,355,828	+		HGI48_RS14875	0.60	+0.1
3,355,828	+		HGI48_RS14875	0.60	+0.0
3,355,829	-		HGI48_RS14875	0.60	+1.5
3,355,829	-		HGI48_RS14875	0.60	+0.2
3,355,829	-		HGI48_RS14875	0.60	+0.6
3,355,829	-		HGI48_RS14875	0.60	-0.2
3,355,829	-				+0.5
3,355,840	+				+1.5
3,355,961	-				+0.9
3,356,033	+		HGI48_RS14875	0.81	+1.1
3,356,034	-		HGI48_RS14875	0.81	-0.9
3,356,034	-		HGI48_RS14875	0.81	+1.3
3,356,034	-		HGI48_RS14875	0.81	+0.6
3,356,160	+				+1.6
3,356,161	-				-1.9
3,356,161	-				-1.9
3,356,161	-				+0.9
3,356,161	-				-2.5
3,356,181	+				+0.4
3,356,185	-				+0.6
3,356,271	+				+1.7
3,356,271	+				-0.0
3,356,271	+				-0.1
3,356,271	+				+1.5
3,356,271	+				-2.5
3,356,272	-				-0.1
3,356,272	-				+0.0
3,356,272	-				+1.3
3,356,272	-				+2.0
3,356,275	+				-1.5
3,356,275	+				-0.0
3,356,275	+				-2.5
3,356,276	-				-2.1
3,356,276	-				-2.1
3,356,276	-				-0.5
3,356,276	-				-0.1
3,356,276	-				+0.2
3,356,276	-				+1.1
3,356,283	+				-0.3
3,356,290	+				-1.9
3,356,291	-				+0.6
3,356,306	+				-0.1
3,356,306	+				+1.2
3,356,306	+				+0.5
3,356,307	-				+0.4
3,356,408	-				+2.7
3,356,420	+				-0.0
3,356,527	-		HGI48_RS14880	0.23	-0.2
3,356,531	-		HGI48_RS14880	0.25	-2.1
3,356,531	-		HGI48_RS14880	0.25	+0.4
3,356,531	-		HGI48_RS14880	0.25	-1.3
3,356,538	+		HGI48_RS14880	0.28	+0.1
3,356,538	+		HGI48_RS14880	0.28	+0.2
3,356,538	+		HGI48_RS14880	0.28	-0.3
3,356,538	+		HGI48_RS14880	0.28	-0.8
3,356,538	+		HGI48_RS14880	0.28	-1.9
3,356,538	+		HGI48_RS14880	0.28	-2.7
3,356,538	+		HGI48_RS14880	0.28	+1.0
3,356,539	-		HGI48_RS14880	0.28	-1.5
3,356,539	-		HGI48_RS14880	0.28	-2.3
3,356,539	-		HGI48_RS14880	0.28	+0.0
3,356,539	-		HGI48_RS14880	0.28	-2.9
3,356,539	-				-1.1
3,356,556	+		HGI48_RS14880	0.35	+0.5
3,356,557	-		HGI48_RS14880	0.36	-0.3
3,356,558	+		HGI48_RS14880	0.36	-1.5
3,356,558	+				+1.5
3,356,558	+				+2.8
3,356,559	-		HGI48_RS14880	0.37	+1.5
3,356,649	+		HGI48_RS14880	0.75	-0.8
3,356,650	-		HGI48_RS14880	0.76	+1.0
3,356,662	+		HGI48_RS14880	0.81	-0.5
3,356,670	+				-0.5
3,356,760	+				-1.9
3,356,781	-				+0.9
3,356,836	+		HGI48_RS14885	0.29	+0.9
3,356,836	+		HGI48_RS14885	0.29	+0.5
3,356,836	+		HGI48_RS14885	0.29	-0.4
3,356,840	+		HGI48_RS14885	0.31	-0.5
3,356,840	+		HGI48_RS14885	0.31	-1.9
3,356,841	-		HGI48_RS14885	0.31	+1.3
3,356,841	-		HGI48_RS14885	0.31	+0.6
3,356,856	+		HGI48_RS14885	0.39	-0.8
3,356,857	-		HGI48_RS14885	0.39	-0.3
3,356,875	+		HGI48_RS14885	0.48	+1.3
3,356,875	+		HGI48_RS14885	0.48	-2.0
3,356,875	+		HGI48_RS14885	0.48	-2.1
3,356,876	-		HGI48_RS14885	0.49	+0.1
3,356,876	-		HGI48_RS14885	0.49	-1.0
3,356,876	-		HGI48_RS14885	0.49	+0.1
3,356,876	-				-0.5
3,356,878	-		HGI48_RS14885	0.50	-1.0
3,356,884	-		HGI48_RS14885	0.53	+0.0
3,356,884	-		HGI48_RS14885	0.53	-2.1
3,356,884	-		HGI48_RS14885	0.53	-2.5
3,356,884	-		HGI48_RS14885	0.53	+0.6
3,356,885	+		HGI48_RS14885	0.53	-2.3
3,356,885	+		HGI48_RS14885	0.53	+0.7
3,356,886	-		HGI48_RS14885	0.54	-0.2
3,356,886	-		HGI48_RS14885	0.54	+1.6
3,356,886	-		HGI48_RS14885	0.54	+0.7
3,356,886	-		HGI48_RS14885	0.54	-2.1
3,356,922	+		HGI48_RS14885	0.72	-0.9
3,356,923	-		HGI48_RS14885	0.72	+1.6
3,356,923	-		HGI48_RS14885	0.72	-1.5
3,356,923	-		HGI48_RS14885	0.72	-2.3
3,356,923	-		HGI48_RS14885	0.72	+0.5
3,356,931	+		HGI48_RS14885	0.76	-0.9
3,356,932	-		HGI48_RS14885	0.77	+0.2
3,356,936	+		HGI48_RS14885	0.79	+0.1
3,356,937	-		HGI48_RS14885	0.79	+0.0
3,356,954	+		HGI48_RS14885	0.88	-1.9
3,356,954	+		HGI48_RS14885	0.88	-0.1
3,356,954	+		HGI48_RS14885	0.88	+0.3
3,356,954	+		HGI48_RS14885	0.88	-2.3
3,356,954	+		HGI48_RS14885	0.88	-1.9
3,356,954	+		HGI48_RS14885	0.88	-1.9
3,356,955	-		HGI48_RS14885	0.88	-1.0
3,356,955	-		HGI48_RS14885	0.88	+1.7
3,356,966	-				-2.9
3,356,977	-				-1.3
3,356,977	-				+2.1
3,356,979	+				-2.3
3,357,085	+		HGI48_RS14890	0.23	-2.7
3,357,085	+		HGI48_RS14890	0.23	+0.3
3,357,086	-		HGI48_RS14890	0.23	+0.7
3,357,086	-		HGI48_RS14890	0.23	+0.3
3,357,086	-		HGI48_RS14890	0.23	+1.2
3,357,092	+				-1.1
3,357,092	+		HGI48_RS14890	0.24	-0.9
3,357,092	+		HGI48_RS14890	0.24	+0.3
3,357,093	-		HGI48_RS14890	0.25	+0.1
3,357,093	-		HGI48_RS14890	0.25	+0.5
3,357,093	-		HGI48_RS14890	0.25	-3.1
3,357,093	-		HGI48_RS14890	0.25	-1.9
3,357,107	+		HGI48_RS14890	0.28	+0.7
3,357,108	-		HGI48_RS14890	0.28	+1.3
3,357,200	-				+2.0
3,357,214	+		HGI48_RS14890	0.52	-0.8
3,357,217	-		HGI48_RS14890	0.52	-1.5
3,357,232	+		HGI48_RS14890	0.56	+1.4
3,357,233	-				-0.5
3,357,246	-		HGI48_RS14890	0.59	+1.1
3,357,262	+		HGI48_RS14890	0.63	+0.9
3,357,263	-		HGI48_RS14890	0.63	-1.4
3,357,263	-				+0.5
3,357,263	-		HGI48_RS14890	0.63	+0.1
3,357,263	-		HGI48_RS14890	0.63	-0.3
3,357,276	+		HGI48_RS14890	0.66	-2.1
3,357,276	+				+0.5
3,357,276	+		HGI48_RS14890	0.66	+0.2
3,357,276	+		HGI48_RS14890	0.66	-0.9
3,357,277	-		HGI48_RS14890	0.66	+2.2
3,357,277	-				-1.1
3,357,277	-				+0.5
3,357,277	-		HGI48_RS14890	0.66	-0.0
3,357,301	-				+1.0
3,357,301	-		HGI48_RS14890	0.71	-2.1
3,357,387	+				-0.3
3,357,387	+				-0.8
3,357,387	+				-0.2
3,357,388	-				-0.7
3,357,388	-				-0.7
3,357,388	-				+0.9
3,357,430	-				-1.5