Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13545

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,962,340	+				+1.2
2,962,356	+				-0.4
2,962,370	-				-0.2
2,962,395	+				+1.3
2,962,395	+				+1.3
2,962,395	+				+0.9
2,962,395	+				-1.7
2,962,395	+				-1.0
2,962,395	+				+0.7
2,962,395	+				-2.1
2,962,396	-				+0.8
2,962,396	-				-1.0
2,962,396	-				-2.0
2,962,396	-				+0.3
2,962,396	-				-0.5
2,962,396	-				-2.5
2,962,400	-				-1.3
2,962,400	-				-1.8
2,962,400	-				-0.0
2,962,400	-				+0.7
2,962,421	+				-0.7
2,962,426	-				-1.3
2,962,439	-				-0.9
2,962,439	-				+1.0
2,962,442	+				-1.0
2,962,442	+				-1.9
2,962,464	+				+1.0
2,962,475	-				+0.7
2,962,499	+				+0.9
2,962,500	-				+1.8
2,962,652	+		HGI48_RS13535	0.50	-0.3
2,962,652	+		HGI48_RS13535	0.50	-0.1
2,962,653	-		HGI48_RS13535	0.50	+0.8
2,962,653	-		HGI48_RS13535	0.50	+0.7
2,962,686	-		HGI48_RS13535	0.61	+0.5
2,962,765	+		HGI48_RS13535	0.87	-1.2
2,962,766	-		HGI48_RS13535	0.88	-0.5
2,962,769	+		HGI48_RS13535	0.89	+0.7
2,962,770	-		HGI48_RS13535	0.89	+1.1
2,962,770	-		HGI48_RS13535	0.89	-1.0
2,962,770	-		HGI48_RS13535	0.89	-0.1
2,962,770	-		HGI48_RS13535	0.89	-2.3
2,962,786	+				-0.4
2,962,787	-				+1.6
2,962,787	-				+0.9
2,962,787	-				+0.3
2,962,801	-				+0.1
2,962,821	-				-1.1
2,962,886	+		HGI48_RS13540	0.18	-0.4
2,963,037	-		HGI48_RS13540	0.53	+1.3
2,963,103	+		HGI48_RS13540	0.68	-0.4
2,963,103	+		HGI48_RS13540	0.68	-2.0
2,963,103	+		HGI48_RS13540	0.68	-2.0
2,963,103	+		HGI48_RS13540	0.68	+0.5
2,963,103	+		HGI48_RS13540	0.68	+0.1
2,963,104	-		HGI48_RS13540	0.68	-0.2
2,963,104	-		HGI48_RS13540	0.68	+0.0
2,963,208	+				+0.2
2,963,238	+				+0.9
2,963,239	-				-2.5
2,963,267	-				+1.0
2,963,290	+				-2.0
2,963,302	+				-1.3
2,963,302	+				-2.0
2,963,303	-				+0.5
2,963,303	-				-0.5
2,963,303	-				+1.2
2,963,303	-				+1.0
2,963,304	+				-0.9
2,963,304	+				-0.9
2,963,304	+				-0.4
2,963,304	+				-1.0
2,963,304	+				-0.2
2,963,304	+				-2.0
2,963,304	+				-0.7
2,963,305	-				-1.7
2,963,305	-				+2.9
2,963,305	-				-1.1
2,963,305	-				-0.1
2,963,305	-				-0.7
2,963,305	-				-0.7
2,963,308	+				+0.1
2,963,308	+				-1.4
2,963,308	+				+1.8
2,963,309	-				+0.4
2,963,311	+				+0.7
2,963,311	+				+1.4
2,963,311	+				-2.9
2,963,318	-				+0.7
2,963,322	+				-2.0
2,963,323	-				-1.7
2,963,326	+				-2.9
2,963,326	+				-1.3
2,963,327	-				-2.0
2,963,328	+				+0.4
2,963,329	-				-0.7
2,963,394	+		HGI48_RS13545	0.17	+1.0
2,963,394	+		HGI48_RS13545	0.17	-0.9
2,963,394	+				+1.0
2,963,394	+		HGI48_RS13545	0.17	-0.4
2,963,394	+		HGI48_RS13545	0.17	-0.7
2,963,395	-		HGI48_RS13545	0.17	-2.0
2,963,400	-		HGI48_RS13545	0.19	+0.1
2,963,400	-		HGI48_RS13545	0.19	+0.3
2,963,629	-		HGI48_RS13545	0.73	-0.0
2,963,629	-				-1.3
2,963,657	-		HGI48_RS13545	0.79	-2.5
2,963,657	-		HGI48_RS13545	0.79	-1.0
2,963,868	+				+1.7
2,964,006	+		HGI48_RS13550	0.12	+0.8
2,964,006	+		HGI48_RS13550	0.12	+1.7
2,964,007	-		HGI48_RS13550	0.12	+1.3
2,964,007	-		HGI48_RS13550	0.12	+0.1
2,964,101	+		HGI48_RS13550	0.16	+1.6
2,964,102	-		HGI48_RS13550	0.17	+0.6
2,964,124	+		HGI48_RS13550	0.18	+1.6
2,964,157	-		HGI48_RS13550	0.19	-2.0
2,964,157	-		HGI48_RS13550	0.19	+0.5
2,964,179	+		HGI48_RS13550	0.20	+1.1
2,964,179	+		HGI48_RS13550	0.20	-3.0
2,964,180	-		HGI48_RS13550	0.20	+0.5
2,964,204	+		HGI48_RS13550	0.21	+0.1
2,964,216	+		HGI48_RS13550	0.22	+2.0
2,964,257	+		HGI48_RS13550	0.24	-0.1
2,964,257	+				+2.3
2,964,276	-		HGI48_RS13550	0.25	-0.4
2,964,355	-		HGI48_RS13550	0.29	+0.8
2,964,383	+		HGI48_RS13550	0.30	+2.3
2,964,401	+		HGI48_RS13550	0.31	-0.4
2,964,401	+		HGI48_RS13550	0.31	+0.6
2,964,401	+		HGI48_RS13550	0.31	+1.2
2,964,402	-		HGI48_RS13550	0.31	+1.3
2,964,402	-		HGI48_RS13550	0.31	-2.0
2,964,402	-		HGI48_RS13550	0.31	-1.7
2,964,402	-		HGI48_RS13550	0.31	+1.9
2,964,403	+		HGI48_RS13550	0.31	+1.3
2,964,403	+		HGI48_RS13550	0.31	+2.6
2,964,403	+		HGI48_RS13550	0.31	+2.8
2,964,403	+		HGI48_RS13550	0.31	+0.3
2,964,403	+		HGI48_RS13550	0.31	+1.9
2,964,403	+		HGI48_RS13550	0.31	+0.6
2,964,404	-		HGI48_RS13550	0.31	+1.2
2,964,404	-		HGI48_RS13550	0.31	-0.5
2,964,404	-		HGI48_RS13550	0.31	+0.1
2,964,404	-		HGI48_RS13550	0.31	+0.3
2,964,404	-		HGI48_RS13550	0.31	+1.0
2,964,404	-		HGI48_RS13550	0.31	-0.4
2,964,404	-		HGI48_RS13550	0.31	+0.5
2,964,404	-		HGI48_RS13550	0.31	+1.4
2,964,404	-		HGI48_RS13550	0.31	+0.7
2,964,404	-		HGI48_RS13550	0.31	+0.9
2,964,581	+		HGI48_RS13550	0.39	+1.7
2,964,586	+		HGI48_RS13550	0.40	+1.1
2,964,586	+		HGI48_RS13550	0.40	+1.6
2,964,586	+		HGI48_RS13550	0.40	+1.5
2,964,586	+		HGI48_RS13550	0.40	-0.3
2,964,590	+		HGI48_RS13550	0.40	-1.3
2,964,621	-		HGI48_RS13550	0.41	+0.7
2,964,738	+		HGI48_RS13550	0.47	+1.9
2,964,738	+		HGI48_RS13550	0.47	+1.6
2,964,738	+		HGI48_RS13550	0.47	+0.0
2,964,738	+		HGI48_RS13550	0.47	+2.3
2,964,739	-		HGI48_RS13550	0.47	+1.5
2,964,739	-		HGI48_RS13550	0.47	+0.5
2,964,739	-		HGI48_RS13550	0.47	+0.1
2,964,739	-		HGI48_RS13550	0.47	+1.8