Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05200

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS05195 and HGI48_RS05200 are separated by 204 nucleotidesHGI48_RS05200 and HGI48_RS05205 overlap by 11 nucleotides HGI48_RS05195: HGI48_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,091,105 to 1,092,064 _RS05195 HGI48_RS05200: HGI48_RS05200 - VOC family protein, at 1,092,269 to 1,092,658 _RS05200 HGI48_RS05205: HGI48_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,092,648 to 1,093,976 _RS05205 Position (kb) 1092 1093Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1092.140 kb on + strandat 1092.185 kb on + strandat 1092.268 kb on + strandat 1092.268 kb on + strandat 1092.268 kb on + strandat 1092.304 kb on + strandat 1092.317 kb on + strand, within HGI48_RS05200at 1092.338 kb on + strand, within HGI48_RS05200at 1092.338 kb on + strand, within HGI48_RS05200at 1092.590 kb on + strandat 1092.590 kb on + strandat 1092.647 kb on + strandat 1092.648 kb on - strandat 1092.659 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
1,092,140 + +0.6
1,092,185 + -2.3
1,092,268 + -2.4
1,092,268 + -1.4
1,092,268 + -0.0
1,092,304 + -1.4
1,092,317 + HGI48_RS05200 0.12 -2.9
1,092,338 + HGI48_RS05200 0.18 -1.6
1,092,338 + HGI48_RS05200 0.18 -0.5
1,092,590 + +1.3
1,092,590 + -0.4
1,092,647 + +1.8
1,092,648 - -2.6
1,092,659 + +1.6

Or see this region's nucleotide sequence