Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04760

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04755 and HGI48_RS04760 are separated by 95 nucleotidesHGI48_RS04760 and HGI48_RS04765 are separated by 231 nucleotidesHGI48_RS04765 and HGI48_RS04770 are separated by 67 nucleotides HGI48_RS04755: HGI48_RS04755 - phosphotransferase, at 995,935 to 996,981 _RS04755 HGI48_RS04760: HGI48_RS04760 - hypothetical protein, at 997,077 to 999,779 _RS04760 HGI48_RS04765: HGI48_RS04765 - hypothetical protein, at 1,000,011 to 1,000,655 _RS04765 HGI48_RS04770: HGI48_RS04770 - acyl carrier protein, at 1,000,723 to 1,000,968 _RS04770 Position (kb) 997 998 999 1000Strain fitness (log2 ratio) -2 -1 0 1 2at 996.083 kb on - strand, within HGI48_RS04755at 996.348 kb on - strand, within HGI48_RS04755at 996.423 kb on - strand, within HGI48_RS04755at 996.674 kb on - strandat 996.737 kb on + strand, within HGI48_RS04755at 996.798 kb on - strand, within HGI48_RS04755at 996.835 kb on - strand, within HGI48_RS04755at 996.844 kb on + strand, within HGI48_RS04755at 996.863 kb on - strand, within HGI48_RS04755at 996.867 kb on - strand, within HGI48_RS04755at 997.202 kb on - strandat 997.240 kb on - strandat 997.406 kb on + strand, within HGI48_RS04760at 997.437 kb on + strand, within HGI48_RS04760at 997.438 kb on - strand, within HGI48_RS04760at 997.439 kb on + strand, within HGI48_RS04760at 997.442 kb on + strand, within HGI48_RS04760at 997.502 kb on + strand, within HGI48_RS04760at 997.503 kb on - strand, within HGI48_RS04760at 997.664 kb on + strand, within HGI48_RS04760at 997.714 kb on + strand, within HGI48_RS04760at 997.715 kb on - strand, within HGI48_RS04760at 997.715 kb on - strand, within HGI48_RS04760at 997.769 kb on + strand, within HGI48_RS04760at 997.831 kb on + strand, within HGI48_RS04760at 997.832 kb on - strand, within HGI48_RS04760at 997.892 kb on - strandat 997.939 kb on + strand, within HGI48_RS04760at 997.939 kb on + strandat 997.939 kb on + strand, within HGI48_RS04760at 997.939 kb on + strand, within HGI48_RS04760at 997.940 kb on - strand, within HGI48_RS04760at 998.025 kb on - strand, within HGI48_RS04760at 998.042 kb on + strand, within HGI48_RS04760at 998.043 kb on - strand, within HGI48_RS04760at 998.069 kb on - strand, within HGI48_RS04760at 998.071 kb on + strand, within HGI48_RS04760at 998.132 kb on - strand, within HGI48_RS04760at 998.156 kb on - strand, within HGI48_RS04760at 998.162 kb on - strand, within HGI48_RS04760at 998.203 kb on + strand, within HGI48_RS04760at 998.204 kb on - strand, within HGI48_RS04760at 998.258 kb on + strand, within HGI48_RS04760at 998.259 kb on - strand, within HGI48_RS04760at 998.387 kb on - strand, within HGI48_RS04760at 998.478 kb on - strand, within HGI48_RS04760at 998.478 kb on - strand, within HGI48_RS04760at 998.512 kb on + strand, within HGI48_RS04760at 998.526 kb on + strandat 998.526 kb on + strand, within HGI48_RS04760at 998.527 kb on - strand, within HGI48_RS04760at 998.527 kb on - strand, within HGI48_RS04760at 998.527 kb on - strand, within HGI48_RS04760at 998.616 kb on + strand, within HGI48_RS04760at 998.622 kb on - strand, within HGI48_RS04760at 998.684 kb on - strand, within HGI48_RS04760at 998.684 kb on - strand, within HGI48_RS04760at 998.915 kb on + strand, within HGI48_RS04760at 999.026 kb on + strand, within HGI48_RS04760at 999.185 kb on + strand, within HGI48_RS04760at 999.185 kb on + strandat 999.185 kb on + strand, within HGI48_RS04760at 999.186 kb on - strand, within HGI48_RS04760at 999.186 kb on - strand, within HGI48_RS04760at 999.231 kb on + strand, within HGI48_RS04760at 999.235 kb on + strand, within HGI48_RS04760at 999.236 kb on - strand, within HGI48_RS04760at 999.248 kb on + strand, within HGI48_RS04760at 999.252 kb on - strand, within HGI48_RS04760at 999.367 kb on + strandat 999.562 kb on + strandat 999.562 kb on + strandat 999.689 kb on + strandat 999.760 kb on - strandat 999.798 kb on + strandat 1000.164 kb on - strand, within HGI48_RS04765at 1000.485 kb on + strand, within HGI48_RS04765at 1000.489 kb on - strand, within HGI48_RS04765at 1000.541 kb on - strand, within HGI48_RS04765at 1000.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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996,083 - HGI48_RS04755 0.14 -1.4
996,348 - HGI48_RS04755 0.39 -0.4
996,423 - HGI48_RS04755 0.47 -2.3
996,674 - +1.6
996,737 + HGI48_RS04755 0.77 +0.0
996,798 - HGI48_RS04755 0.82 +0.2
996,835 - HGI48_RS04755 0.86 +1.4
996,844 + HGI48_RS04755 0.87 -2.0
996,863 - HGI48_RS04755 0.89 +0.0
996,867 - HGI48_RS04755 0.89 -1.4
997,202 - +1.3
997,240 - -0.8
997,406 + HGI48_RS04760 0.12 +1.0
997,437 + HGI48_RS04760 0.13 -2.3
997,438 - HGI48_RS04760 0.13 -1.0
997,439 + HGI48_RS04760 0.13 +0.7
997,442 + HGI48_RS04760 0.14 +0.0
997,502 + HGI48_RS04760 0.16 +0.3
997,503 - HGI48_RS04760 0.16 -0.8
997,664 + HGI48_RS04760 0.22 +0.6
997,714 + HGI48_RS04760 0.24 +0.1
997,715 - HGI48_RS04760 0.24 +2.4
997,715 - HGI48_RS04760 0.24 -2.4
997,769 + HGI48_RS04760 0.26 +2.0
997,831 + HGI48_RS04760 0.28 -1.8
997,832 - HGI48_RS04760 0.28 +0.1
997,892 - -0.0
997,939 + HGI48_RS04760 0.32 +1.2
997,939 + +1.0
997,939 + HGI48_RS04760 0.32 -0.2
997,939 + HGI48_RS04760 0.32 -0.6
997,940 - HGI48_RS04760 0.32 -0.2
998,025 - HGI48_RS04760 0.35 -1.2
998,042 + HGI48_RS04760 0.36 +0.6
998,043 - HGI48_RS04760 0.36 -1.6
998,069 - HGI48_RS04760 0.37 -1.3
998,071 + HGI48_RS04760 0.37 -0.8
998,132 - HGI48_RS04760 0.39 -0.1
998,156 - HGI48_RS04760 0.40 -1.4
998,162 - HGI48_RS04760 0.40 -0.9
998,203 + HGI48_RS04760 0.42 +1.3
998,204 - HGI48_RS04760 0.42 +1.4
998,258 + HGI48_RS04760 0.44 -1.8
998,259 - HGI48_RS04760 0.44 -2.0
998,387 - HGI48_RS04760 0.48 -0.4
998,478 - HGI48_RS04760 0.52 -0.7
998,478 - HGI48_RS04760 0.52 -0.0
998,512 + HGI48_RS04760 0.53 -0.1
998,526 + +1.3
998,526 + HGI48_RS04760 0.54 +1.0
998,527 - HGI48_RS04760 0.54 +0.7
998,527 - HGI48_RS04760 0.54 -2.4
998,527 - HGI48_RS04760 0.54 +2.4
998,616 + HGI48_RS04760 0.57 -2.0
998,622 - HGI48_RS04760 0.57 +0.1
998,684 - HGI48_RS04760 0.59 -0.1
998,684 - HGI48_RS04760 0.59 -0.3
998,915 + HGI48_RS04760 0.68 -1.8
999,026 + HGI48_RS04760 0.72 -0.4
999,185 + HGI48_RS04760 0.78 -0.6
999,185 + -0.0
999,185 + HGI48_RS04760 0.78 -0.6
999,186 - HGI48_RS04760 0.78 +0.0
999,186 - HGI48_RS04760 0.78 -0.4
999,231 + HGI48_RS04760 0.80 -1.8
999,235 + HGI48_RS04760 0.80 +1.2
999,236 - HGI48_RS04760 0.80 -0.6
999,248 + HGI48_RS04760 0.80 -0.6
999,252 - HGI48_RS04760 0.80 +1.1
999,367 + -1.0
999,562 + +2.1
999,562 + -2.3
999,689 + +0.2
999,760 - -0.9
999,798 + +0.1
1,000,164 - HGI48_RS04765 0.24 -0.9
1,000,485 + HGI48_RS04765 0.73 -1.8
1,000,489 - HGI48_RS04765 0.74 -2.0
1,000,541 - HGI48_RS04765 0.82 -1.8
1,000,662 - -1.4

Or see this region's nucleotide sequence