Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04065

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04055 and HGI48_RS04060 are separated by 219 nucleotidesHGI48_RS04060 and HGI48_RS04065 are separated by 310 nucleotidesHGI48_RS04065 and HGI48_RS04070 are separated by 840 nucleotides HGI48_RS04055: HGI48_RS04055 - DUF2958 domain-containing protein, at 856,658 to 857,074 _RS04055 HGI48_RS04060: HGI48_RS04060 - helix-turn-helix transcriptional regulator, at 857,294 to 857,587 _RS04060 HGI48_RS04065: HGI48_RS04065 - DUF736 domain-containing protein, at 857,898 to 858,212 _RS04065 HGI48_RS04070: HGI48_RS04070 - ParB N-terminal domain-containing protein, at 859,053 to 861,119 _RS04070 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 857.052 kb on + strandat 857.052 kb on + strandat 857.052 kb on + strandat 857.053 kb on - strandat 857.053 kb on - strandat 857.174 kb on + strandat 857.174 kb on + strandat 857.175 kb on - strandat 857.175 kb on - strandat 857.178 kb on + strandat 857.179 kb on - strandat 857.190 kb on + strandat 857.191 kb on - strandat 857.191 kb on - strandat 857.202 kb on + strandat 857.291 kb on + strandat 857.291 kb on + strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.306 kb on + strandat 857.306 kb on + strandat 857.306 kb on + strandat 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strandat 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.390 kb on + strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.391 kb on - strand, within HGI48_RS04060at 857.392 kb on + strand, within HGI48_RS04060at 857.392 kb on + strand, within HGI48_RS04060at 857.392 kb on + strand, within HGI48_RS04060at 857.392 kb on + strand, within HGI48_RS04060at 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strandat 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strandat 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strand, within HGI48_RS04060at 857.393 kb on - strandat 857.393 kb on - strand, within HGI48_RS04060at 857.399 kb on - strand, within HGI48_RS04060at 857.495 kb on + strand, within HGI48_RS04060at 857.495 kb on + strand, within HGI48_RS04060at 857.496 kb on - strand, within HGI48_RS04060at 857.971 kb on + strand, within HGI48_RS04065at 857.971 kb on + strand, within HGI48_RS04065at 857.971 kb on + strand, within HGI48_RS04065at 857.972 kb on - strandat 857.972 kb on - strand, within HGI48_RS04065at 858.085 kb on + strand, within HGI48_RS04065at 858.207 kb on - strandat 858.459 kb on + strandat 858.459 kb on + strandat 858.460 kb on - strandat 858.460 kb on - strandat 858.596 kb on + strandat 858.596 kb on + strandat 858.596 kb on + strandat 858.596 kb on + strandat 858.597 kb on - strandat 858.668 kb on + strandat 858.668 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.839 kb on - strandat 858.839 kb on - strandat 858.839 kb on - strandat 859.037 kb on + strandat 859.037 kb on + strandat 859.037 kb on + strandat 859.037 kb on + strandat 859.037 kb on + strandat 859.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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857,052 + -0.4
857,052 + +3.1
857,052 + +0.2
857,053 - -1.2
857,053 - +0.9
857,174 + +0.1
857,174 + -2.8
857,175 - -2.4
857,175 - +1.6
857,178 + -2.9
857,179 - +1.2
857,190 + +0.6
857,191 - -1.4
857,191 - +0.6
857,202 + +0.8
857,291 + -0.5
857,291 + -0.8
857,292 - +0.3
857,292 - +0.1
857,292 - -1.9
857,292 - -0.5
857,292 - -3.1
857,306 + -1.5
857,306 + -2.9
857,306 + -0.6
857,390 + HGI48_RS04060 0.33 +2.0
857,390 + HGI48_RS04060 0.33 -0.1
857,390 + HGI48_RS04060 0.33 +1.4
857,390 + HGI48_RS04060 0.33 +1.4
857,390 + HGI48_RS04060 0.33 +0.6
857,390 + HGI48_RS04060 0.33 +0.2
857,390 + HGI48_RS04060 0.33 -1.4
857,390 + HGI48_RS04060 0.33 -1.9
857,390 + HGI48_RS04060 0.33 +0.8
857,390 + HGI48_RS04060 0.33 +0.5
857,390 + HGI48_RS04060 0.33 -1.7
857,390 + +0.6
857,390 + HGI48_RS04060 0.33 -1.4
857,390 + HGI48_RS04060 0.33 -2.4
857,390 + HGI48_RS04060 0.33 -1.4
857,391 - HGI48_RS04060 0.33 +0.4
857,391 - HGI48_RS04060 0.33 -2.7
857,391 - HGI48_RS04060 0.33 -1.2
857,391 - HGI48_RS04060 0.33 +0.5
857,391 - HGI48_RS04060 0.33 +1.1
857,391 - HGI48_RS04060 0.33 -0.1
857,391 - HGI48_RS04060 0.33 +1.8
857,391 - HGI48_RS04060 0.33 -0.9
857,391 - HGI48_RS04060 0.33 -1.9
857,392 + HGI48_RS04060 0.33 +1.4
857,392 + HGI48_RS04060 0.33 -1.1
857,392 + HGI48_RS04060 0.33 -0.3
857,392 + HGI48_RS04060 0.33 +0.1
857,393 - HGI48_RS04060 0.34 -0.1
857,393 - +0.1
857,393 - HGI48_RS04060 0.34 -1.7
857,393 - HGI48_RS04060 0.34 +0.4
857,393 - HGI48_RS04060 0.34 -0.4
857,393 - -0.9
857,393 - HGI48_RS04060 0.34 -0.7
857,393 - HGI48_RS04060 0.34 +0.1
857,393 - +0.6
857,393 - HGI48_RS04060 0.34 -2.2
857,399 - HGI48_RS04060 0.36 -1.4
857,495 + HGI48_RS04060 0.68 -0.8
857,495 + HGI48_RS04060 0.68 +1.9
857,496 - HGI48_RS04060 0.69 -0.9
857,971 + HGI48_RS04065 0.23 -1.0
857,971 + HGI48_RS04065 0.23 -2.7
857,971 + HGI48_RS04065 0.23 -2.5
857,972 - +3.6
857,972 - HGI48_RS04065 0.23 +1.1
858,085 + HGI48_RS04065 0.59 -1.4
858,207 - -0.1
858,459 + +0.5
858,459 + +2.4
858,460 - -1.0
858,460 - +0.6
858,596 + +0.4
858,596 + +0.6
858,596 + -0.1
858,596 + +1.4
858,597 - -0.4
858,668 + +0.2
858,668 + +0.0
858,838 + +0.4
858,838 + +3.3
858,838 + -0.5
858,838 + -2.4
858,839 - -1.0
858,839 - +0.0
858,839 - +0.8
859,037 + +0.6
859,037 + +0.0
859,037 + +1.0
859,037 + -0.8
859,037 + +0.2
859,038 - +2.3

Or see this region's nucleotide sequence