Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03480 and HGI48_RS03485 overlap by 8 nucleotides HGI48_RS03485 and HGI48_RS03490 are separated by 189 nucleotides HGI48_RS03490 and HGI48_RS03495 are separated by 28 nucleotides HGI48_RS03495 and HGI48_RS03500 are separated by 113 nucleotides
HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906
_RS03480
HGI48_RS03485: HGI48_RS03485 - heavy metal response regulator transcription factor, at 731,899 to 732,579
_RS03485
HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154
_RS03490
HGI48_RS03495: HGI48_RS03495 - cation efflux system protein CusF, at 734,183 to 734,536
_RS03495
HGI48_RS03500: HGI48_RS03500 - efflux RND transporter periplasmic adaptor subunit, at 734,650 to 735,930
_RS03500
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 731.804 kb on + strand at 731.805 kb on - strand at 731.805 kb on - strand at 731.822 kb on + strand at 731.823 kb on - strand at 731.832 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.963 kb on + strand at 731.974 kb on + strand at 731.974 kb on + strand, within HGI48_RS03485 at 731.974 kb on + strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.195 kb on + strand, within HGI48_RS03485 at 732.196 kb on - strand, within HGI48_RS03485 at 732.211 kb on + strand, within HGI48_RS03485 at 732.287 kb on + strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.333 kb on + strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.353 kb on - strand, within HGI48_RS03485 at 732.378 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.393 kb on + strand, within HGI48_RS03485 at 732.393 kb on + strand at 732.393 kb on + strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.396 kb on + strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.446 kb on + strand at 732.447 kb on - strand at 732.536 kb on + strand at 732.537 kb on - strand at 732.571 kb on + strand at 732.583 kb on - strand at 732.583 kb on - strand at 732.611 kb on + strand at 732.611 kb on + strand at 732.612 kb on - strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.621 kb on - strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.705 kb on - strand at 732.728 kb on + strand at 732.729 kb on - strand at 732.742 kb on - strand at 732.742 kb on - strand at 732.779 kb on + strand at 732.780 kb on - strand at 732.785 kb on + strand at 732.785 kb on + strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.790 kb on - strand at 732.790 kb on - strand at 732.842 kb on - strand at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.913 kb on - strand at 732.913 kb on - strand, within HGI48_RS03490 at 732.916 kb on + strand, within HGI48_RS03490 at 732.917 kb on - strand, within HGI48_RS03490 at 732.987 kb on + strand, within HGI48_RS03490 at 732.988 kb on - strand, within HGI48_RS03490 at 732.991 kb on - strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.092 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.100 kb on - strand at 733.141 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.197 kb on + strand, within HGI48_RS03490 at 733.198 kb on - strand, within HGI48_RS03490 at 733.222 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.360 kb on + strand, within HGI48_RS03490 at 733.361 kb on - strand, within HGI48_RS03490 at 733.396 kb on - strand at 733.433 kb on + strand, within HGI48_RS03490 at 733.433 kb on + strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.440 kb on + strand, within HGI48_RS03490 at 733.455 kb on - strand, within HGI48_RS03490 at 733.488 kb on + strand at 733.489 kb on - strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.641 kb on + strand, within HGI48_RS03490 at 733.642 kb on - strand, within HGI48_RS03490 at 733.726 kb on - strand, within HGI48_RS03490 at 733.773 kb on + strand, within HGI48_RS03490 at 733.815 kb on + strand, within HGI48_RS03490 at 733.863 kb on + strand at 733.974 kb on - strand, within HGI48_RS03490 at 733.979 kb on + strand, within HGI48_RS03490 at 733.979 kb on + strand, within HGI48_RS03490 at 733.980 kb on - strand, within HGI48_RS03490 at 734.003 kb on + strand, within HGI48_RS03490 at 734.004 kb on - strand, within HGI48_RS03490 at 734.088 kb on + strand at 734.089 kb on - strand at 734.092 kb on + strand at 734.156 kb on + strand at 734.156 kb on + strand at 734.159 kb on - strand at 734.247 kb on - strand, within HGI48_RS03495 at 734.444 kb on - strand, within HGI48_RS03495 at 734.497 kb on + strand, within HGI48_RS03495 at 734.681 kb on + strand at 734.857 kb on - strand, within HGI48_RS03500 at 734.916 kb on + strand, within HGI48_RS03500 at 734.923 kb on - strand, within HGI48_RS03500 at 734.923 kb on - strand, within HGI48_RS03500 at 735.015 kb on + strand, within HGI48_RS03500 at 735.016 kb on - strand, within HGI48_RS03500 at 735.019 kb on + strand, within HGI48_RS03500 at 735.020 kb on - strand, within HGI48_RS03500 at 735.020 kb on - strand, within HGI48_RS03500 at 735.022 kb on - strand, within HGI48_RS03500 at 735.114 kb on + strand, within HGI48_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 731,804 + -2.3 731,805 - -1.0 731,805 - +1.4 731,822 + -0.5 731,823 - +2.4 731,832 + -2.1 731,920 + +0.5 731,920 + +1.0 731,920 + +1.4 731,920 + -0.4 731,920 + -0.2 731,920 + +3.6 731,920 + +2.0 731,921 - -2.1 731,921 - +1.2 731,921 - -0.0 731,963 + -0.0 731,974 + -0.3 731,974 + HGI48_RS03485 0.11 +0.8 731,974 + HGI48_RS03485 0.11 +0.5 731,975 - HGI48_RS03485 0.11 -1.6 731,975 - HGI48_RS03485 0.11 -0.3 731,975 - HGI48_RS03485 0.11 -1.3 732,055 + HGI48_RS03485 0.23 -1.3 732,055 + HGI48_RS03485 0.23 -1.1 732,056 - HGI48_RS03485 0.23 -1.6 732,056 - HGI48_RS03485 0.23 -0.7 732,195 + HGI48_RS03485 0.43 +1.4 732,196 - HGI48_RS03485 0.44 +0.6 732,211 + HGI48_RS03485 0.46 -2.3 732,287 + HGI48_RS03485 0.57 -1.2 732,288 - HGI48_RS03485 0.57 +0.2 732,288 - HGI48_RS03485 0.57 +0.4 732,333 + HGI48_RS03485 0.64 -1.3 732,350 - HGI48_RS03485 0.66 -2.1 732,350 - HGI48_RS03485 0.66 -1.5 732,350 - HGI48_RS03485 0.66 -1.6 732,352 + HGI48_RS03485 0.67 -1.1 732,352 + HGI48_RS03485 0.67 -2.1 732,353 - HGI48_RS03485 0.67 -0.1 732,378 + HGI48_RS03485 0.70 +0.8 732,391 + HGI48_RS03485 0.72 +2.4 732,391 + HGI48_RS03485 0.72 +0.3 732,391 + HGI48_RS03485 0.72 -0.3 732,392 - HGI48_RS03485 0.72 +0.8 732,392 - HGI48_RS03485 0.72 -1.0 732,392 - HGI48_RS03485 0.72 -1.3 732,393 + HGI48_RS03485 0.73 +0.9 732,393 + +1.9 732,393 + HGI48_RS03485 0.73 +0.8 732,394 - HGI48_RS03485 0.73 -1.6 732,394 - HGI48_RS03485 0.73 +1.3 732,394 - HGI48_RS03485 0.73 -2.3 732,394 - HGI48_RS03485 0.73 -2.1 732,396 + HGI48_RS03485 0.73 -0.6 732,397 - HGI48_RS03485 0.73 -2.5 732,397 - HGI48_RS03485 0.73 -0.3 732,446 + +0.7 732,447 - +3.0 732,536 + +0.7 732,537 - +0.9 732,571 + +0.5 732,583 - -0.9 732,583 - +1.0 732,611 + +0.4 732,611 + -0.6 732,612 - +0.2 732,620 + -1.6 732,620 + +0.2 732,620 + -2.1 732,621 - -0.5 732,640 + +0.1 732,640 + +0.7 732,640 + -0.1 732,705 - -2.5 732,728 + -1.1 732,729 - +1.0 732,742 - -1.4 732,742 - -2.3 732,779 + +1.8 732,780 - +1.3 732,785 + -0.9 732,785 + -1.6 732,786 - +0.1 732,786 - +0.5 732,786 - -1.9 732,789 + -2.5 732,789 + -1.7 732,789 + -3.0 732,789 + -2.5 732,790 - +0.1 732,790 - +1.4 732,842 - -0.9 732,912 + HGI48_RS03490 0.10 +0.1 732,912 + HGI48_RS03490 0.10 -1.0 732,912 + HGI48_RS03490 0.10 -1.6 732,912 + HGI48_RS03490 0.10 +0.7 732,912 + HGI48_RS03490 0.10 -0.9 732,912 + HGI48_RS03490 0.10 -1.6 732,913 - +0.7 732,913 - HGI48_RS03490 0.10 -0.3 732,916 + HGI48_RS03490 0.11 +0.5 732,917 - HGI48_RS03490 0.11 -1.4 732,987 + HGI48_RS03490 0.16 +0.3 732,988 - HGI48_RS03490 0.16 -2.3 732,991 - HGI48_RS03490 0.16 -1.3 733,050 + HGI48_RS03490 0.20 -1.6 733,050 + HGI48_RS03490 0.20 +0.7 733,092 + HGI48_RS03490 0.23 -2.6 733,099 + HGI48_RS03490 0.24 +0.7 733,099 + HGI48_RS03490 0.24 +1.4 733,100 - +1.7 733,141 + HGI48_RS03490 0.27 +1.4 733,165 + HGI48_RS03490 0.29 +0.4 733,165 + HGI48_RS03490 0.29 +0.6 733,166 - HGI48_RS03490 0.29 -0.3 733,166 - HGI48_RS03490 0.29 +0.3 733,197 + HGI48_RS03490 0.31 -3.4 733,198 - HGI48_RS03490 0.31 -0.0 733,222 + HGI48_RS03490 0.33 -1.5 733,288 + HGI48_RS03490 0.37 -0.3 733,288 + HGI48_RS03490 0.37 -0.5 733,360 + HGI48_RS03490 0.43 +0.1 733,361 - HGI48_RS03490 0.43 -1.9 733,396 - -0.9 733,433 + HGI48_RS03490 0.48 -1.8 733,433 + HGI48_RS03490 0.48 -2.1 733,434 - HGI48_RS03490 0.48 +1.3 733,434 - HGI48_RS03490 0.48 +0.1 733,434 - HGI48_RS03490 0.48 +0.6 733,440 + HGI48_RS03490 0.48 -0.6 733,455 - HGI48_RS03490 0.49 +0.3 733,488 + -0.9 733,489 - HGI48_RS03490 0.52 -0.4 733,516 + HGI48_RS03490 0.54 -1.8 733,516 + HGI48_RS03490 0.54 +0.7 733,516 + HGI48_RS03490 0.54 -0.1 733,516 + HGI48_RS03490 0.54 -3.3 733,641 + HGI48_RS03490 0.63 -2.8 733,642 - HGI48_RS03490 0.63 -1.3 733,726 - HGI48_RS03490 0.69 -1.9 733,773 + HGI48_RS03490 0.72 +0.7 733,815 + HGI48_RS03490 0.75 -2.9 733,863 + +1.4 733,974 - HGI48_RS03490 0.87 +0.5 733,979 + HGI48_RS03490 0.87 +1.3 733,979 + HGI48_RS03490 0.87 -1.3 733,980 - HGI48_RS03490 0.87 -0.6 734,003 + HGI48_RS03490 0.89 -0.2 734,004 - HGI48_RS03490 0.89 -0.5 734,088 + +0.5 734,089 - +0.7 734,092 + +1.4 734,156 + -1.6 734,156 + +0.3 734,159 - -1.1 734,247 - HGI48_RS03495 0.18 +1.5 734,444 - HGI48_RS03495 0.74 -0.5 734,497 + HGI48_RS03495 0.89 -0.6 734,681 + +0.9 734,857 - HGI48_RS03500 0.16 -0.1 734,916 + HGI48_RS03500 0.21 -1.1 734,923 - HGI48_RS03500 0.21 +0.6 734,923 - HGI48_RS03500 0.21 -1.0 735,015 + HGI48_RS03500 0.28 +1.3 735,016 - HGI48_RS03500 0.29 -3.2 735,019 + HGI48_RS03500 0.29 +1.4 735,020 - HGI48_RS03500 0.29 -0.2 735,020 - HGI48_RS03500 0.29 +0.7 735,022 - HGI48_RS03500 0.29 -2.1 735,114 + HGI48_RS03500 0.36 +0.4
Or see this region's nucleotide sequence