Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03465 and HGI48_RS03470 are separated by 85 nucleotides HGI48_RS03470 and HGI48_RS03475 are separated by 241 nucleotides HGI48_RS03475 and HGI48_RS03480 are separated by 29 nucleotides HGI48_RS03480 and HGI48_RS03485 overlap by 8 nucleotides HGI48_RS03485 and HGI48_RS03490 are separated by 189 nucleotides
HGI48_RS03465: HGI48_RS03465 - LysE family transporter, at 728,964 to 729,635
_RS03465
HGI48_RS03470: HGI48_RS03470 - tRNA-Gly, at 729,721 to 729,794
_RS03470
HGI48_RS03475: HGI48_RS03475 - winged helix-turn-helix transcriptional regulator, at 730,036 to 730,413
_RS03475
HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906
_RS03480
HGI48_RS03485: HGI48_RS03485 - heavy metal response regulator transcription factor, at 731,899 to 732,579
_RS03485
HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154
_RS03490
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 729.543 kb on + strand, within HGI48_RS03465 at 729.646 kb on + strand at 729.647 kb on - strand at 729.647 kb on - strand at 729.699 kb on + strand at 729.699 kb on + strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.700 kb on - strand at 729.701 kb on + strand at 729.702 kb on - strand at 729.739 kb on + strand, within HGI48_RS03470 at 729.740 kb on - strand at 729.740 kb on - strand at 729.762 kb on + strand, within HGI48_RS03470 at 729.762 kb on + strand, within HGI48_RS03470 at 729.763 kb on - strand, within HGI48_RS03470 at 729.763 kb on - strand, within HGI48_RS03470 at 729.764 kb on + strand, within HGI48_RS03470 at 729.765 kb on - strand, within HGI48_RS03470 at 729.810 kb on + strand at 729.811 kb on - strand at 729.819 kb on + strand at 729.820 kb on - strand at 729.820 kb on - strand at 729.820 kb on - strand at 729.842 kb on - strand at 729.919 kb on + strand at 729.919 kb on + strand at 729.919 kb on + strand at 729.920 kb on - strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.928 kb on + strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.929 kb on - strand at 729.954 kb on + strand at 729.955 kb on - strand at 729.974 kb on + strand at 729.975 kb on - strand at 729.986 kb on + strand at 729.986 kb on + strand at 729.987 kb on - strand at 729.987 kb on - strand at 729.987 kb on - strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.994 kb on + strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.995 kb on - strand at 729.996 kb on + strand at 729.997 kb on - strand at 729.997 kb on - strand at 729.997 kb on - strand at 730.004 kb on - strand at 730.054 kb on + strand at 730.101 kb on + strand, within HGI48_RS03475 at 730.101 kb on + strand, within HGI48_RS03475 at 730.102 kb on - strand, within HGI48_RS03475 at 730.152 kb on + strand, within HGI48_RS03475 at 730.153 kb on - strand, within HGI48_RS03475 at 730.276 kb on + strand at 730.276 kb on + strand, within HGI48_RS03475 at 730.276 kb on + strand, within HGI48_RS03475 at 730.316 kb on + strand, within HGI48_RS03475 at 730.316 kb on + strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.317 kb on - strand, within HGI48_RS03475 at 730.359 kb on + strand at 730.379 kb on - strand at 730.379 kb on - strand at 730.390 kb on - strand at 730.390 kb on - strand at 730.419 kb on + strand at 730.433 kb on + strand at 730.457 kb on + strand at 730.457 kb on + strand at 730.458 kb on - strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.476 kb on + strand at 730.477 kb on - strand at 730.477 kb on - strand at 730.479 kb on + strand at 730.480 kb on - strand at 730.480 kb on - strand at 730.553 kb on + strand at 730.553 kb on + strand at 730.554 kb on - strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.563 kb on + strand at 730.564 kb on - strand at 730.564 kb on - strand at 730.566 kb on - strand at 730.649 kb on + strand, within HGI48_RS03480 at 730.650 kb on - strand, within HGI48_RS03480 at 730.672 kb on - strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.684 kb on + strand, within HGI48_RS03480 at 730.685 kb on - strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.733 kb on + strand, within HGI48_RS03480 at 730.734 kb on - strand, within HGI48_RS03480 at 730.797 kb on + strand, within HGI48_RS03480 at 730.874 kb on + strand, within HGI48_RS03480 at 730.874 kb on + strand, within HGI48_RS03480 at 730.925 kb on + strand at 730.925 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 731.187 kb on + strand at 731.187 kb on + strand, within HGI48_RS03480 at 731.188 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.261 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.368 kb on + strand, within HGI48_RS03480 at 731.369 kb on - strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.458 kb on - strand, within HGI48_RS03480 at 731.458 kb on - strand, within HGI48_RS03480 at 731.464 kb on + strand at 731.464 kb on + strand, within HGI48_RS03480 at 731.464 kb on + strand, within HGI48_RS03480 at 731.587 kb on - strand, within HGI48_RS03480 at 731.725 kb on - strand, within HGI48_RS03480 at 731.744 kb on + strand, within HGI48_RS03480 at 731.804 kb on + strand at 731.805 kb on - strand at 731.805 kb on - strand at 731.822 kb on + strand at 731.823 kb on - strand at 731.832 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.963 kb on + strand at 731.974 kb on + strand at 731.974 kb on + strand, within HGI48_RS03485 at 731.974 kb on + strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.195 kb on + strand, within HGI48_RS03485 at 732.196 kb on - strand, within HGI48_RS03485 at 732.211 kb on + strand, within HGI48_RS03485 at 732.287 kb on + strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.333 kb on + strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.353 kb on - strand, within HGI48_RS03485 at 732.378 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.393 kb on + strand, within HGI48_RS03485 at 732.393 kb on + strand at 732.393 kb on + strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.396 kb on + strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.446 kb on + strand at 732.447 kb on - strand at 732.536 kb on + strand at 732.537 kb on - strand at 732.571 kb on + strand at 732.583 kb on - strand at 732.583 kb on - strand at 732.611 kb on + strand at 732.611 kb on + strand at 732.612 kb on - strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.621 kb on - strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.705 kb on - strand at 732.728 kb on + strand at 732.729 kb on - strand at 732.742 kb on - strand at 732.742 kb on - strand at 732.779 kb on + strand at 732.780 kb on - strand at 732.785 kb on + strand at 732.785 kb on + strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.790 kb on - strand at 732.790 kb on - strand at 732.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 729,543 + HGI48_RS03465 0.86 -0.5 729,646 + -0.9 729,647 - +0.3 729,647 - -1.3 729,699 + -1.0 729,699 + -1.9 729,700 - -2.5 729,700 - +0.1 729,700 - +1.3 729,700 - +1.1 729,700 - -1.3 729,701 + +0.0 729,702 - -2.6 729,739 + HGI48_RS03470 0.24 -1.6 729,740 - -0.9 729,740 - +1.4 729,762 + HGI48_RS03470 0.55 -2.1 729,762 + HGI48_RS03470 0.55 +0.5 729,763 - HGI48_RS03470 0.57 -0.3 729,763 - HGI48_RS03470 0.57 +1.2 729,764 + HGI48_RS03470 0.58 +0.8 729,765 - HGI48_RS03470 0.59 -1.1 729,810 + +1.7 729,811 - -1.3 729,819 + -1.3 729,820 - +1.7 729,820 - -1.6 729,820 - +0.4 729,842 - -0.2 729,919 + +1.2 729,919 + -0.3 729,919 + +1.1 729,920 - -0.3 729,928 + -0.9 729,928 + -0.2 729,928 + -2.8 729,928 + +0.7 729,928 + -0.4 729,929 - -1.9 729,929 - -1.6 729,929 - -0.9 729,929 - -1.3 729,929 - +1.7 729,929 - +0.7 729,954 + -2.1 729,955 - +0.7 729,974 + -0.6 729,975 - -0.8 729,986 + -2.6 729,986 + +1.6 729,987 - +1.2 729,987 - +0.9 729,987 - -2.5 729,994 + +2.7 729,994 + -0.9 729,994 + -0.1 729,994 + -1.3 729,994 + -1.9 729,994 + +0.7 729,995 - -0.9 729,995 - +1.4 729,995 - +0.2 729,995 - -0.1 729,995 - +0.9 729,995 - -1.3 729,996 + -1.1 729,997 - +0.3 729,997 - -1.9 729,997 - +0.5 730,004 - -0.3 730,054 + -0.6 730,101 + HGI48_RS03475 0.17 -2.8 730,101 + HGI48_RS03475 0.17 -2.3 730,102 - HGI48_RS03475 0.17 -2.1 730,152 + HGI48_RS03475 0.31 -0.9 730,153 - HGI48_RS03475 0.31 -0.6 730,276 + -0.3 730,276 + HGI48_RS03475 0.63 -0.9 730,276 + HGI48_RS03475 0.63 +2.0 730,316 + HGI48_RS03475 0.74 -1.3 730,316 + HGI48_RS03475 0.74 -1.2 730,317 - HGI48_RS03475 0.74 +0.7 730,317 - HGI48_RS03475 0.74 -0.1 730,317 - HGI48_RS03475 0.74 +0.6 730,359 + +0.7 730,379 - +0.7 730,379 - +1.3 730,390 - +0.0 730,390 - -0.5 730,419 + -0.9 730,433 + -0.0 730,457 + +0.4 730,457 + -2.1 730,458 - -0.0 730,476 + -1.4 730,476 + +0.5 730,476 + -0.3 730,476 + -1.9 730,476 + +1.0 730,477 - -0.1 730,477 - +0.9 730,479 + +0.1 730,480 - -0.5 730,480 - -2.3 730,553 + -1.6 730,553 + +1.0 730,554 - -1.9 730,563 + +2.7 730,563 + +0.0 730,563 + -0.3 730,563 + -0.2 730,563 + +1.3 730,563 + -2.3 730,563 + -0.3 730,564 - -3.3 730,564 - +0.3 730,566 - -1.6 730,649 + HGI48_RS03480 0.14 -1.6 730,650 - HGI48_RS03480 0.14 -2.3 730,672 - HGI48_RS03480 0.16 +0.3 730,684 + HGI48_RS03480 0.16 +0.7 730,684 + HGI48_RS03480 0.16 +0.8 730,684 + HGI48_RS03480 0.16 +0.9 730,685 - HGI48_RS03480 0.17 +2.3 730,733 + HGI48_RS03480 0.20 -0.8 730,733 + HGI48_RS03480 0.20 +0.7 730,733 + HGI48_RS03480 0.20 +0.8 730,733 + HGI48_RS03480 0.20 -2.8 730,734 - HGI48_RS03480 0.20 +0.4 730,797 + HGI48_RS03480 0.24 +0.0 730,874 + HGI48_RS03480 0.29 +1.1 730,874 + HGI48_RS03480 0.29 -0.6 730,925 + -0.9 730,925 + HGI48_RS03480 0.33 +0.7 730,981 + HGI48_RS03480 0.37 +0.1 730,981 + HGI48_RS03480 0.37 +2.0 730,999 + HGI48_RS03480 0.38 -3.0 730,999 + HGI48_RS03480 0.38 +0.3 730,999 + HGI48_RS03480 0.38 +0.4 730,999 + HGI48_RS03480 0.38 -0.0 730,999 + HGI48_RS03480 0.38 -2.5 731,187 + -0.9 731,187 + HGI48_RS03480 0.51 +0.4 731,188 - HGI48_RS03480 0.51 -2.5 731,190 - HGI48_RS03480 0.51 -1.0 731,190 - HGI48_RS03480 0.51 +0.7 731,261 + HGI48_RS03480 0.56 -1.3 731,312 + HGI48_RS03480 0.59 +0.6 731,312 + HGI48_RS03480 0.59 -1.9 731,368 + HGI48_RS03480 0.63 +1.3 731,369 - HGI48_RS03480 0.63 -0.6 731,410 + HGI48_RS03480 0.66 -2.3 731,410 + HGI48_RS03480 0.66 -0.1 731,410 + HGI48_RS03480 0.66 +0.3 731,410 + HGI48_RS03480 0.66 -2.1 731,410 + HGI48_RS03480 0.66 -2.3 731,410 + HGI48_RS03480 0.66 -1.6 731,411 - HGI48_RS03480 0.66 +0.7 731,411 - HGI48_RS03480 0.66 -0.3 731,411 - HGI48_RS03480 0.66 -0.6 731,411 - HGI48_RS03480 0.66 +0.5 731,411 - HGI48_RS03480 0.66 -1.6 731,411 - HGI48_RS03480 0.66 +0.7 731,411 - HGI48_RS03480 0.66 -1.0 731,458 - HGI48_RS03480 0.69 +1.0 731,458 - HGI48_RS03480 0.69 -2.9 731,464 + +0.7 731,464 + HGI48_RS03480 0.70 -1.9 731,464 + HGI48_RS03480 0.70 +0.4 731,587 - HGI48_RS03480 0.78 +0.2 731,725 - HGI48_RS03480 0.88 -0.6 731,744 + HGI48_RS03480 0.89 -2.9 731,804 + -2.3 731,805 - -1.0 731,805 - +1.4 731,822 + -0.5 731,823 - +2.4 731,832 + -2.1 731,920 + +0.5 731,920 + +1.0 731,920 + +1.4 731,920 + -0.4 731,920 + -0.2 731,920 + +3.6 731,920 + +2.0 731,921 - -2.1 731,921 - +1.2 731,921 - -0.0 731,963 + -0.0 731,974 + -0.3 731,974 + HGI48_RS03485 0.11 +0.8 731,974 + HGI48_RS03485 0.11 +0.5 731,975 - HGI48_RS03485 0.11 -1.6 731,975 - HGI48_RS03485 0.11 -0.3 731,975 - HGI48_RS03485 0.11 -1.3 732,055 + HGI48_RS03485 0.23 -1.3 732,055 + HGI48_RS03485 0.23 -1.1 732,056 - HGI48_RS03485 0.23 -1.6 732,056 - HGI48_RS03485 0.23 -0.7 732,195 + HGI48_RS03485 0.43 +1.4 732,196 - HGI48_RS03485 0.44 +0.6 732,211 + HGI48_RS03485 0.46 -2.3 732,287 + HGI48_RS03485 0.57 -1.2 732,288 - HGI48_RS03485 0.57 +0.2 732,288 - HGI48_RS03485 0.57 +0.4 732,333 + HGI48_RS03485 0.64 -1.3 732,350 - HGI48_RS03485 0.66 -2.1 732,350 - HGI48_RS03485 0.66 -1.5 732,350 - HGI48_RS03485 0.66 -1.6 732,352 + HGI48_RS03485 0.67 -1.1 732,352 + HGI48_RS03485 0.67 -2.1 732,353 - HGI48_RS03485 0.67 -0.1 732,378 + HGI48_RS03485 0.70 +0.8 732,391 + HGI48_RS03485 0.72 +2.4 732,391 + HGI48_RS03485 0.72 +0.3 732,391 + HGI48_RS03485 0.72 -0.3 732,392 - HGI48_RS03485 0.72 +0.8 732,392 - HGI48_RS03485 0.72 -1.0 732,392 - HGI48_RS03485 0.72 -1.3 732,393 + HGI48_RS03485 0.73 +0.9 732,393 + +1.9 732,393 + HGI48_RS03485 0.73 +0.8 732,394 - HGI48_RS03485 0.73 -1.6 732,394 - HGI48_RS03485 0.73 +1.3 732,394 - HGI48_RS03485 0.73 -2.3 732,394 - HGI48_RS03485 0.73 -2.1 732,396 + HGI48_RS03485 0.73 -0.6 732,397 - HGI48_RS03485 0.73 -2.5 732,397 - HGI48_RS03485 0.73 -0.3 732,446 + +0.7 732,447 - +3.0 732,536 + +0.7 732,537 - +0.9 732,571 + +0.5 732,583 - -0.9 732,583 - +1.0 732,611 + +0.4 732,611 + -0.6 732,612 - +0.2 732,620 + -1.6 732,620 + +0.2 732,620 + -2.1 732,621 - -0.5 732,640 + +0.1 732,640 + +0.7 732,640 + -0.1 732,705 - -2.5 732,728 + -1.1 732,729 - +1.0 732,742 - -1.4 732,742 - -2.3 732,779 + +1.8 732,780 - +1.3 732,785 + -0.9 732,785 + -1.6 732,786 - +0.1 732,786 - +0.5 732,786 - -1.9 732,789 + -2.5 732,789 + -1.7 732,789 + -3.0 732,789 + -2.5 732,790 - +0.1 732,790 - +1.4 732,842 - -0.9
Or see this region's nucleotide sequence