Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03065 and HGI48_RS03070 are separated by 59 nucleotides HGI48_RS03070 and HGI48_RS03075 are separated by 14 nucleotides HGI48_RS03075 and HGI48_RS03080 overlap by 8 nucleotides HGI48_RS03080 and HGI48_RS03085 overlap by 4 nucleotides HGI48_RS03085 and HGI48_RS03090 overlap by 4 nucleotides
HGI48_RS03065: HGI48_RS03065 - phage major tail tube protein, at 652,474 to 652,989
_RS03065
HGI48_RS03070: HGI48_RS03070 - phage tail assembly protein, at 653,049 to 653,351
_RS03070
HGI48_RS03075: HGI48_RS03075 - GpE family phage tail protein, at 653,366 to 653,485
_RS03075
HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318
_RS03080
HGI48_RS03085: HGI48_RS03085 - phage tail protein, at 656,315 to 656,848
_RS03085
HGI48_RS03090: HGI48_RS03090 - phage late control D family protein, at 656,845 to 657,954
_RS03090
Position (kb) 653
654
655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.499 kb on - strand at 652.617 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.876 kb on + strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.923 kb on + strand, within HGI48_RS03065 at 652.923 kb on + strand at 652.987 kb on + strand at 652.987 kb on + strand at 653.031 kb on + strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.037 kb on - strand at 653.141 kb on + strand, within HGI48_RS03070 at 653.142 kb on - strand, within HGI48_RS03070 at 653.225 kb on + strand, within HGI48_RS03070 at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.487 kb on - strand at 653.487 kb on - strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.525 kb on + strand at 653.679 kb on - strand at 653.807 kb on + strand, within HGI48_RS03080 at 653.807 kb on + strand, within HGI48_RS03080 at 653.808 kb on - strand, within HGI48_RS03080 at 653.808 kb on - strand at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 654.114 kb on + strand, within HGI48_RS03080 at 654.115 kb on - strand, within HGI48_RS03080 at 654.334 kb on - strand, within HGI48_RS03080 at 654.459 kb on + strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080 at 654.524 kb on + strand, within HGI48_RS03080 at 654.524 kb on + strand, within HGI48_RS03080 at 654.525 kb on - strand, within HGI48_RS03080 at 654.525 kb on - strand, within HGI48_RS03080 at 654.527 kb on + strand, within HGI48_RS03080 at 654.528 kb on - strand at 654.594 kb on - strand, within HGI48_RS03080 at 654.594 kb on - strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.704 kb on + strand, within HGI48_RS03080 at 654.756 kb on + strand, within HGI48_RS03080 at 654.757 kb on - strand, within HGI48_RS03080 at 654.937 kb on + strand, within HGI48_RS03080 at 654.938 kb on - strand, within HGI48_RS03080 at 654.938 kb on - strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.965 kb on + strand, within HGI48_RS03080 at 654.966 kb on - strand, within HGI48_RS03080 at 654.992 kb on + strand, within HGI48_RS03080 at 655.125 kb on - strand, within HGI48_RS03080 at 655.125 kb on - strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.229 kb on + strand, within HGI48_RS03080 at 655.230 kb on - strand, within HGI48_RS03080 at 655.246 kb on + strand at 655.310 kb on + strand, within HGI48_RS03080 at 655.505 kb on - strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.900 kb on - strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 656.003 kb on + strand, within HGI48_RS03080 at 656.112 kb on + strand at 656.113 kb on - strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.183 kb on + strand at 656.183 kb on + strand at 656.184 kb on - strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.324 kb on - strand at 656.326 kb on + strand at 656.326 kb on + strand at 656.327 kb on - strand at 656.327 kb on - strand at 656.368 kb on - strand at 656.413 kb on + strand, within HGI48_RS03085 at 656.414 kb on - strand, within HGI48_RS03085 at 656.432 kb on - strand, within HGI48_RS03085 at 656.610 kb on - strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.619 kb on - strand at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand at 656.710 kb on - strand at 656.967 kb on + strand, within HGI48_RS03090 at 656.999 kb on + strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.055 kb on - strand at 657.079 kb on + strand, within HGI48_RS03090 at 657.080 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 652,499 - +0.8 652,617 + HGI48_RS03065 0.28 -1.6 652,743 + HGI48_RS03065 0.52 -0.8 652,743 + HGI48_RS03065 0.52 +2.1 652,873 + HGI48_RS03065 0.77 +0.4 652,873 + HGI48_RS03065 0.77 -1.3 652,874 - HGI48_RS03065 0.78 +0.7 652,874 - HGI48_RS03065 0.78 -1.2 652,874 - HGI48_RS03065 0.78 -1.3 652,874 - HGI48_RS03065 0.78 -0.6 652,876 + HGI48_RS03065 0.78 -0.3 652,877 - HGI48_RS03065 0.78 -1.0 652,877 - HGI48_RS03065 0.78 -1.3 652,923 + HGI48_RS03065 0.87 -0.3 652,923 + +1.7 652,987 + -1.4 652,987 + -0.2 653,031 + +0.3 653,032 - -1.6 653,032 - -0.3 653,032 - -0.0 653,037 - -0.3 653,141 + HGI48_RS03070 0.30 +0.3 653,142 - HGI48_RS03070 0.31 +0.7 653,225 + HGI48_RS03070 0.58 +0.1 653,483 + +0.9 653,483 + -0.5 653,483 + -0.3 653,483 + +1.8 653,483 + +0.2 653,484 - +0.2 653,484 - +0.7 653,484 - -0.3 653,484 - +1.2 653,484 - -1.6 653,484 - -0.2 653,487 - +0.1 653,487 - -1.3 653,521 + -1.3 653,521 + +0.7 653,521 + -0.5 653,522 - -0.1 653,522 - +2.2 653,522 - -1.3 653,522 - -0.1 653,525 + -0.1 653,679 - +1.1 653,807 + HGI48_RS03080 0.12 -1.9 653,807 + HGI48_RS03080 0.12 +0.3 653,808 - HGI48_RS03080 0.12 +0.1 653,808 - +1.1 653,811 + HGI48_RS03080 0.12 -1.9 653,811 + HGI48_RS03080 0.12 -1.4 653,811 + HGI48_RS03080 0.12 -2.3 653,811 + HGI48_RS03080 0.12 -0.3 653,811 + HGI48_RS03080 0.12 -1.6 653,812 - HGI48_RS03080 0.12 -1.0 653,812 - HGI48_RS03080 0.12 -2.6 653,812 - HGI48_RS03080 0.12 -1.3 653,812 - HGI48_RS03080 0.12 +0.7 653,812 - HGI48_RS03080 0.12 +1.2 653,812 - HGI48_RS03080 0.12 -1.9 654,114 + HGI48_RS03080 0.22 +0.5 654,115 - HGI48_RS03080 0.22 +1.6 654,334 - HGI48_RS03080 0.30 -1.3 654,459 + HGI48_RS03080 0.35 +0.1 654,470 - HGI48_RS03080 0.35 +0.2 654,470 - HGI48_RS03080 0.35 +1.1 654,524 + HGI48_RS03080 0.37 +0.1 654,524 + HGI48_RS03080 0.37 +1.1 654,525 - HGI48_RS03080 0.37 +1.7 654,525 - HGI48_RS03080 0.37 -1.9 654,527 + HGI48_RS03080 0.37 -2.7 654,528 - -0.9 654,594 - HGI48_RS03080 0.39 -0.9 654,594 - HGI48_RS03080 0.39 +0.1 654,704 + HGI48_RS03080 0.43 -0.7 654,704 + HGI48_RS03080 0.43 +0.4 654,704 + HGI48_RS03080 0.43 -1.2 654,704 + HGI48_RS03080 0.43 +1.6 654,704 + HGI48_RS03080 0.43 +0.4 654,704 + HGI48_RS03080 0.43 +1.2 654,756 + HGI48_RS03080 0.45 -1.9 654,757 - HGI48_RS03080 0.45 +0.9 654,937 + HGI48_RS03080 0.51 -2.5 654,938 - HGI48_RS03080 0.51 -1.3 654,938 - HGI48_RS03080 0.51 -1.0 654,965 + HGI48_RS03080 0.52 +0.7 654,965 + HGI48_RS03080 0.52 -1.3 654,965 + HGI48_RS03080 0.52 -0.1 654,966 - HGI48_RS03080 0.52 -2.9 654,992 + HGI48_RS03080 0.53 +0.0 655,125 - HGI48_RS03080 0.58 -0.9 655,125 - HGI48_RS03080 0.58 -2.1 655,229 + HGI48_RS03080 0.62 -0.5 655,229 + HGI48_RS03080 0.62 -1.9 655,229 + HGI48_RS03080 0.62 -3.4 655,230 - HGI48_RS03080 0.62 -1.3 655,246 + +2.6 655,310 + HGI48_RS03080 0.64 +0.7 655,505 - HGI48_RS03080 0.71 +0.5 655,568 + HGI48_RS03080 0.74 +1.0 655,568 + HGI48_RS03080 0.74 -1.9 655,568 + HGI48_RS03080 0.74 +1.6 655,568 + HGI48_RS03080 0.74 +0.1 655,568 + HGI48_RS03080 0.74 -1.6 655,568 + +2.8 655,568 + HGI48_RS03080 0.74 -2.2 655,568 + HGI48_RS03080 0.74 -1.9 655,569 - HGI48_RS03080 0.74 +0.7 655,569 - HGI48_RS03080 0.74 +0.5 655,569 - HGI48_RS03080 0.74 -0.3 655,569 - HGI48_RS03080 0.74 +1.9 655,569 - HGI48_RS03080 0.74 -1.9 655,569 - HGI48_RS03080 0.74 -0.6 655,569 - HGI48_RS03080 0.74 -0.4 655,569 - HGI48_RS03080 0.74 +0.4 655,569 - HGI48_RS03080 0.74 +1.2 655,569 - HGI48_RS03080 0.74 -1.4 655,569 - HGI48_RS03080 0.74 -0.3 655,900 - HGI48_RS03080 0.85 -2.1 655,920 + HGI48_RS03080 0.86 -2.6 655,920 + HGI48_RS03080 0.86 +0.1 655,920 + HGI48_RS03080 0.86 -1.0 655,920 + HGI48_RS03080 0.86 +0.4 655,920 + HGI48_RS03080 0.86 -0.1 655,920 + HGI48_RS03080 0.86 +0.7 655,920 + HGI48_RS03080 0.86 +0.4 655,920 + HGI48_RS03080 0.86 -2.0 655,920 + HGI48_RS03080 0.86 +1.1 655,920 + HGI48_RS03080 0.86 -0.9 655,920 + HGI48_RS03080 0.86 -2.1 655,921 - HGI48_RS03080 0.86 +0.9 655,921 - HGI48_RS03080 0.86 -1.9 655,921 - HGI48_RS03080 0.86 +0.9 655,921 - HGI48_RS03080 0.86 +2.1 655,921 - -0.9 655,921 - HGI48_RS03080 0.86 +0.9 655,921 - HGI48_RS03080 0.86 +1.0 655,921 - HGI48_RS03080 0.86 -2.1 655,921 - HGI48_RS03080 0.86 -0.2 655,921 - HGI48_RS03080 0.86 +0.7 655,921 - HGI48_RS03080 0.86 -1.6 655,921 - HGI48_RS03080 0.86 -3.4 655,921 - HGI48_RS03080 0.86 -0.3 656,003 + HGI48_RS03080 0.89 -1.3 656,112 + -2.3 656,113 - +0.7 656,165 + -0.9 656,165 + -2.1 656,165 + +2.7 656,165 + -1.9 656,166 - -1.6 656,166 - -1.6 656,166 - -1.0 656,166 - -0.7 656,166 - +0.7 656,183 + -0.3 656,183 + -0.8 656,184 - +1.3 656,323 + +2.0 656,323 + +1.4 656,323 + -1.3 656,323 + +1.4 656,323 + -2.6 656,324 - +1.1 656,326 + +0.5 656,326 + +0.5 656,327 - -0.3 656,327 - +1.1 656,368 - -2.1 656,413 + HGI48_RS03085 0.18 +0.9 656,414 - HGI48_RS03085 0.19 +1.7 656,432 - HGI48_RS03085 0.22 -0.2 656,610 - HGI48_RS03085 0.55 -0.1 656,618 + -0.9 656,618 + HGI48_RS03085 0.57 -0.5 656,618 + HGI48_RS03085 0.57 +0.7 656,618 + -0.3 656,618 + HGI48_RS03085 0.57 +0.7 656,618 + HGI48_RS03085 0.57 +0.4 656,618 + HGI48_RS03085 0.57 -1.7 656,618 + +0.1 656,618 + HGI48_RS03085 0.57 +0.4 656,618 + HGI48_RS03085 0.57 +1.1 656,618 + HGI48_RS03085 0.57 -1.3 656,618 + HGI48_RS03085 0.57 -0.4 656,618 + HGI48_RS03085 0.57 +0.9 656,618 + HGI48_RS03085 0.57 -1.1 656,618 + HGI48_RS03085 0.57 -2.5 656,618 + HGI48_RS03085 0.57 -1.3 656,618 + HGI48_RS03085 0.57 -0.9 656,618 + HGI48_RS03085 0.57 -0.9 656,618 + HGI48_RS03085 0.57 -2.3 656,618 + HGI48_RS03085 0.57 -0.7 656,618 + HGI48_RS03085 0.57 -0.7 656,618 + HGI48_RS03085 0.57 -0.5 656,618 + HGI48_RS03085 0.57 -0.2 656,619 - -0.3 656,619 - HGI48_RS03085 0.57 -3.0 656,619 - HGI48_RS03085 0.57 +2.0 656,619 - HGI48_RS03085 0.57 -0.7 656,619 - HGI48_RS03085 0.57 -1.3 656,619 - HGI48_RS03085 0.57 -0.9 656,619 - HGI48_RS03085 0.57 +1.0 656,619 - HGI48_RS03085 0.57 +0.2 656,619 - HGI48_RS03085 0.57 +1.3 656,619 - HGI48_RS03085 0.57 -1.9 656,619 - HGI48_RS03085 0.57 +0.4 656,619 - HGI48_RS03085 0.57 -3.2 656,619 - HGI48_RS03085 0.57 -2.6 656,619 - HGI48_RS03085 0.57 +0.7 656,619 - HGI48_RS03085 0.57 -2.5 656,619 - HGI48_RS03085 0.57 -1.1 656,619 - HGI48_RS03085 0.57 -0.0 656,700 + HGI48_RS03085 0.72 -0.3 656,700 + HGI48_RS03085 0.72 -1.6 656,700 + HGI48_RS03085 0.72 -1.2 656,701 - HGI48_RS03085 0.72 -0.2 656,701 - HGI48_RS03085 0.72 -1.9 656,701 - HGI48_RS03085 0.72 -1.6 656,701 - +1.7 656,710 - -0.9 656,967 + HGI48_RS03090 0.11 +1.1 656,999 + HGI48_RS03090 0.14 -0.9 657,000 - HGI48_RS03090 0.14 -1.6 657,000 - HGI48_RS03090 0.14 +0.4 657,055 - -0.3 657,079 + HGI48_RS03090 0.21 -0.3 657,080 - HGI48_RS03090 0.21 -1.9 657,310 - HGI48_RS03090 0.42 +0.5 657,310 - HGI48_RS03090 0.42 -0.6 657,310 - HGI48_RS03090 0.42 +0.9
Or see this region's nucleotide sequence