Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02875 and HGI48_RS02880 are separated by 12 nucleotides HGI48_RS02880 and HGI48_RS02885 are separated by 477 nucleotides
HGI48_RS02875: HGI48_RS02875 - FAD:protein FMN transferase, at 622,649 to 623,620
_RS02875
HGI48_RS02880: HGI48_RS02880 - TetR/AcrR family transcriptional regulator, at 623,633 to 624,214
_RS02880
HGI48_RS02885: HGI48_RS02885 - SDR family oxidoreductase, at 624,692 to 625,555
_RS02885
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.686 kb on + strand at 622.687 kb on - strand at 622.687 kb on - strand at 622.856 kb on - strand at 622.876 kb on + strand, within HGI48_RS02875 at 622.919 kb on - strand, within HGI48_RS02875 at 623.058 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand at 623.113 kb on + strand, within HGI48_RS02875 at 623.113 kb on + strand, within HGI48_RS02875 at 623.156 kb on + strand at 623.156 kb on + strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.362 kb on + strand at 623.363 kb on - strand at 623.363 kb on - strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand at 623.451 kb on - strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.495 kb on + strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.573 kb on + strand at 623.573 kb on + strand at 623.574 kb on - strand at 623.581 kb on + strand at 623.582 kb on - strand at 623.582 kb on - strand at 623.582 kb on - strand at 623.819 kb on + strand, within HGI48_RS02880 at 623.819 kb on + strand at 623.819 kb on + strand at 623.832 kb on + strand, within HGI48_RS02880 at 623.832 kb on + strand, within HGI48_RS02880 at 623.832 kb on + strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.843 kb on + strand, within HGI48_RS02880 at 623.844 kb on - strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand at 623.871 kb on - strand, within HGI48_RS02880 at 623.871 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.969 kb on - strand, within HGI48_RS02880 at 624.070 kb on - strand, within HGI48_RS02880 at 624.070 kb on - strand at 624.166 kb on + strand at 624.167 kb on - strand at 624.203 kb on + strand at 624.265 kb on + strand at 624.265 kb on + strand at 624.266 kb on - strand at 624.278 kb on + strand at 624.279 kb on - strand at 624.290 kb on + strand at 624.342 kb on + strand at 624.400 kb on + strand at 624.400 kb on + strand at 624.400 kb on + strand at 624.401 kb on - strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.482 kb on - strand at 624.547 kb on + strand at 624.547 kb on + strand at 624.548 kb on - strand at 624.548 kb on - strand at 624.548 kb on - strand at 624.551 kb on + strand at 624.551 kb on + strand at 624.552 kb on - strand at 624.552 kb on - strand at 624.552 kb on - strand at 624.651 kb on - strand at 624.678 kb on + strand at 624.678 kb on + strand at 624.678 kb on + strand at 624.678 kb on + strand at 624.678 kb on + strand at 624.678 kb on + strand at 624.679 kb on - strand at 624.679 kb on - strand at 624.679 kb on - strand at 624.679 kb on - strand at 624.679 kb on - strand at 624.679 kb on - strand at 624.697 kb on + strand at 624.698 kb on - strand at 624.750 kb on - strand at 624.805 kb on + strand, within HGI48_RS02885 at 624.880 kb on + strand, within HGI48_RS02885 at 624.880 kb on + strand, within HGI48_RS02885 at 624.880 kb on + strand, within HGI48_RS02885 at 624.881 kb on - strand, within HGI48_RS02885 at 624.952 kb on + strand, within HGI48_RS02885 at 624.953 kb on - strand, within HGI48_RS02885 at 625.041 kb on + strand, within HGI48_RS02885 at 625.041 kb on + strand, within HGI48_RS02885 at 625.042 kb on - strand, within HGI48_RS02885 at 625.103 kb on - strand, within HGI48_RS02885 at 625.103 kb on - strand, within HGI48_RS02885 at 625.103 kb on - strand, within HGI48_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 622,686 + +1.5 622,687 - +1.5 622,687 - -0.6 622,856 - -0.9 622,876 + HGI48_RS02875 0.23 -2.1 622,919 - HGI48_RS02875 0.28 -1.2 623,058 + HGI48_RS02875 0.42 -0.3 623,111 + HGI48_RS02875 0.48 -3.1 623,111 + HGI48_RS02875 0.48 -0.0 623,112 - HGI48_RS02875 0.48 +0.1 623,112 - HGI48_RS02875 0.48 -1.1 623,112 - HGI48_RS02875 0.48 +1.1 623,112 - -0.9 623,113 + HGI48_RS02875 0.48 -0.9 623,113 + HGI48_RS02875 0.48 -0.5 623,156 + +0.7 623,156 + HGI48_RS02875 0.52 -1.3 623,157 - HGI48_RS02875 0.52 -0.3 623,157 - HGI48_RS02875 0.52 +1.5 623,321 + HGI48_RS02875 0.69 -1.6 623,321 + HGI48_RS02875 0.69 +1.4 623,322 - HGI48_RS02875 0.69 -1.6 623,322 - HGI48_RS02875 0.69 +0.4 623,322 - HGI48_RS02875 0.69 -0.1 623,322 - HGI48_RS02875 0.69 -0.2 623,322 - HGI48_RS02875 0.69 +1.6 623,331 - HGI48_RS02875 0.70 -1.5 623,331 - HGI48_RS02875 0.70 +0.3 623,362 + +1.1 623,363 - +2.1 623,363 - HGI48_RS02875 0.73 +1.0 623,450 + HGI48_RS02875 0.82 -2.9 623,450 + HGI48_RS02875 0.82 -0.4 623,450 + HGI48_RS02875 0.82 -0.0 623,450 + HGI48_RS02875 0.82 -2.3 623,450 + HGI48_RS02875 0.82 -2.1 623,450 + HGI48_RS02875 0.82 -1.3 623,450 + HGI48_RS02875 0.82 -0.5 623,451 - HGI48_RS02875 0.83 +2.0 623,451 - HGI48_RS02875 0.83 -0.3 623,451 - HGI48_RS02875 0.83 +0.4 623,451 - HGI48_RS02875 0.83 +0.7 623,451 - HGI48_RS02875 0.83 -1.9 623,451 - +1.7 623,451 - +2.1 623,495 + HGI48_RS02875 0.87 +1.0 623,495 + -0.9 623,495 + HGI48_RS02875 0.87 -1.4 623,496 - HGI48_RS02875 0.87 +2.3 623,496 - HGI48_RS02875 0.87 +0.5 623,496 - HGI48_RS02875 0.87 +0.3 623,496 - HGI48_RS02875 0.87 -2.1 623,573 + -1.6 623,573 + +1.0 623,574 - -1.3 623,581 + +0.3 623,582 - -3.7 623,582 - +0.4 623,582 - -0.5 623,819 + HGI48_RS02880 0.32 -0.5 623,819 + -0.3 623,819 + +0.1 623,832 + HGI48_RS02880 0.34 +0.9 623,832 + HGI48_RS02880 0.34 -0.7 623,832 + HGI48_RS02880 0.34 -0.1 623,833 - HGI48_RS02880 0.34 -0.3 623,833 - HGI48_RS02880 0.34 +1.0 623,833 - HGI48_RS02880 0.34 +2.0 623,833 - HGI48_RS02880 0.34 -0.7 623,833 - HGI48_RS02880 0.34 -0.3 623,833 - HGI48_RS02880 0.34 -0.7 623,833 - HGI48_RS02880 0.34 -0.2 623,843 + HGI48_RS02880 0.36 -0.9 623,844 - HGI48_RS02880 0.36 -1.3 623,870 + HGI48_RS02880 0.41 -2.7 623,870 + HGI48_RS02880 0.41 +0.7 623,870 + HGI48_RS02880 0.41 -2.3 623,870 + HGI48_RS02880 0.41 -1.9 623,870 + +1.3 623,871 - HGI48_RS02880 0.41 -0.3 623,871 - HGI48_RS02880 0.41 -0.3 623,938 - HGI48_RS02880 0.52 +1.7 623,938 - HGI48_RS02880 0.52 +1.0 623,938 - HGI48_RS02880 0.52 -2.1 623,938 - HGI48_RS02880 0.52 -0.8 623,969 - HGI48_RS02880 0.58 -1.3 624,070 - HGI48_RS02880 0.75 +1.2 624,070 - -0.9 624,166 + +0.1 624,167 - +1.6 624,203 + -1.6 624,265 + -1.3 624,265 + -1.9 624,266 - +0.7 624,278 + -0.1 624,279 - +1.5 624,290 + -1.1 624,342 + +1.9 624,400 + -1.6 624,400 + -0.3 624,400 + -0.8 624,401 - +1.5 624,402 + -0.9 624,402 + -0.7 624,402 + -0.1 624,402 + -1.2 624,402 + -0.5 624,402 + -0.6 624,402 + -1.3 624,402 + -1.6 624,402 + +1.7 624,403 - -2.5 624,403 - -0.3 624,403 - -1.3 624,403 - +1.4 624,403 - -0.4 624,403 - +0.7 624,403 - -0.5 624,403 - -1.0 624,403 - -3.0 624,403 - -0.6 624,482 - -0.7 624,547 + -0.0 624,547 + -2.6 624,548 - -0.7 624,548 - -1.9 624,548 - +0.2 624,551 + -1.6 624,551 + -3.1 624,552 - +0.4 624,552 - +0.3 624,552 - +1.7 624,651 - +1.5 624,678 + +1.1 624,678 + -2.1 624,678 + +1.0 624,678 + -0.2 624,678 + -0.5 624,678 + +1.0 624,679 - +0.0 624,679 - -1.3 624,679 - +2.0 624,679 - -0.7 624,679 - +1.0 624,679 - -0.5 624,697 + -1.3 624,698 - -0.9 624,750 - +0.5 624,805 + HGI48_RS02885 0.13 +0.2 624,880 + HGI48_RS02885 0.22 -0.6 624,880 + HGI48_RS02885 0.22 +0.5 624,880 + HGI48_RS02885 0.22 -0.4 624,881 - HGI48_RS02885 0.22 +0.4 624,952 + HGI48_RS02885 0.30 +1.6 624,953 - HGI48_RS02885 0.30 -1.6 625,041 + HGI48_RS02885 0.40 -2.3 625,041 + HGI48_RS02885 0.40 -0.8 625,042 - HGI48_RS02885 0.41 -1.6 625,103 - HGI48_RS02885 0.48 -0.6 625,103 - HGI48_RS02885 0.48 +0.9 625,103 - HGI48_RS02885 0.48 -0.5
Or see this region's nucleotide sequence