Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02425 and HGI48_RS02430 are separated by 389 nucleotides HGI48_RS02430 and HGI48_RS02435 are separated by 405 nucleotides
HGI48_RS02425: HGI48_RS02425 - SDR family oxidoreductase, at 524,790 to 525,554
_RS02425
HGI48_RS02430: HGI48_RS02430 - Tar ligand binding domain-containing protein, at 525,944 to 527,662
_RS02430
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.228 kb on - strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.268 kb on - strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.498 kb on + strand at 525.557 kb on - strand at 525.578 kb on + strand at 525.579 kb on - strand at 525.579 kb on - strand at 525.582 kb on + strand at 525.582 kb on + strand at 525.651 kb on - strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.668 kb on + strand at 525.668 kb on + strand at 525.688 kb on - strand at 525.848 kb on + strand at 525.853 kb on + strand at 525.906 kb on - strand at 525.918 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.950 kb on - strand at 525.950 kb on - strand at 526.105 kb on + strand at 526.105 kb on + strand at 526.106 kb on - strand at 526.151 kb on - strand at 526.151 kb on - strand, within HGI48_RS02430 at 526.308 kb on + strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.355 kb on + strand, within HGI48_RS02430 at 526.365 kb on - strand at 526.365 kb on - strand, within HGI48_RS02430 at 526.365 kb on - strand, within HGI48_RS02430 at 526.372 kb on + strand, within HGI48_RS02430 at 526.373 kb on - strand, within HGI48_RS02430 at 526.454 kb on - strand at 526.469 kb on + strand, within HGI48_RS02430 at 526.469 kb on + strand at 526.469 kb on + strand at 526.470 kb on - strand, within HGI48_RS02430 at 526.470 kb on - strand, within HGI48_RS02430 at 526.559 kb on + strand, within HGI48_RS02430 at 526.559 kb on + strand at 526.559 kb on + strand, within HGI48_RS02430 at 526.561 kb on + strand, within HGI48_RS02430 at 526.561 kb on + strand at 526.561 kb on + strand, within HGI48_RS02430 at 526.609 kb on + strand, within HGI48_RS02430 at 526.610 kb on - strand, within HGI48_RS02430 at 526.610 kb on - strand at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.614 kb on - strand, within HGI48_RS02430 at 526.745 kb on + strand at 526.745 kb on + strand, within HGI48_RS02430 at 526.745 kb on + strand, within HGI48_RS02430 at 526.745 kb on + strand, within HGI48_RS02430 at 526.746 kb on - strand, within HGI48_RS02430 at 526.746 kb on - strand at 526.746 kb on - strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.815 kb on - strand, within HGI48_RS02430 at 527.232 kb on + strand at 527.232 kb on + strand, within HGI48_RS02430 at 527.232 kb on + strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand at 527.420 kb on - strand, within HGI48_RS02430 at 527.420 kb on - strand, within HGI48_RS02430 at 527.696 kb on + strand at 527.702 kb on + strand at 527.702 kb on + strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.747 kb on - strand at 527.780 kb on + strand at 527.781 kb on - strand at 527.781 kb on - strand at 527.815 kb on - strand at 527.846 kb on + strand at 527.847 kb on - strand at 527.847 kb on - strand at 527.848 kb on + strand at 527.849 kb on - strand at 527.851 kb on + strand at 527.851 kb on + strand at 527.852 kb on - strand at 527.862 kb on + strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.958 kb on + strand at 527.959 kb on - strand at 527.959 kb on - strand at 528.092 kb on - strand at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.404 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.439 kb on - strand, within HGI48_RS02435 at 528.529 kb on + strand, within HGI48_RS02435 at 528.529 kb on + strand at 528.529 kb on + strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.533 kb on + strand at 528.534 kb on - strand, within HGI48_RS02435 at 528.534 kb on - strand, within HGI48_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 525,228 - HGI48_RS02425 0.57 +2.4 525,237 + HGI48_RS02425 0.58 -1.3 525,237 + HGI48_RS02425 0.58 -3.1 525,237 + HGI48_RS02425 0.58 -1.6 525,237 + HGI48_RS02425 0.58 +0.5 525,237 + HGI48_RS02425 0.58 -0.3 525,237 + HGI48_RS02425 0.58 +0.6 525,238 - HGI48_RS02425 0.59 +0.3 525,238 - HGI48_RS02425 0.59 -1.3 525,267 + HGI48_RS02425 0.62 +0.5 525,267 + HGI48_RS02425 0.62 +0.7 525,268 - HGI48_RS02425 0.62 +1.1 525,366 + HGI48_RS02425 0.75 +0.7 525,366 + HGI48_RS02425 0.75 -0.0 525,498 + +0.1 525,557 - -2.9 525,578 + +0.4 525,579 - -0.3 525,579 - -2.6 525,582 + -0.6 525,582 + -1.3 525,651 - +0.1 525,655 + -0.1 525,655 + -1.6 525,655 + +0.6 525,656 - +0.4 525,656 - -0.0 525,656 - -0.1 525,656 - -1.9 525,656 - +0.1 525,668 + +2.7 525,668 + +1.2 525,688 - +1.3 525,848 + +1.3 525,853 + +2.9 525,906 - -1.3 525,918 + -3.5 525,949 + -0.3 525,949 + -0.6 525,949 + -1.5 525,949 + -3.1 525,949 + -1.3 525,950 - -1.1 525,950 - +1.3 526,105 + -1.3 526,105 + -1.6 526,106 - +0.7 526,151 - +0.1 526,151 - HGI48_RS02430 0.12 +1.6 526,308 + HGI48_RS02430 0.21 -3.1 526,309 - HGI48_RS02430 0.21 +0.1 526,309 - HGI48_RS02430 0.21 -1.1 526,355 + HGI48_RS02430 0.24 +0.9 526,365 - +1.3 526,365 - HGI48_RS02430 0.24 +0.7 526,365 - HGI48_RS02430 0.24 +0.4 526,372 + HGI48_RS02430 0.25 -0.2 526,373 - HGI48_RS02430 0.25 +0.2 526,454 - +0.7 526,469 + HGI48_RS02430 0.31 -2.1 526,469 + +1.1 526,469 + -0.3 526,470 - HGI48_RS02430 0.31 -2.3 526,470 - HGI48_RS02430 0.31 -1.3 526,559 + HGI48_RS02430 0.36 +0.9 526,559 + -0.9 526,559 + HGI48_RS02430 0.36 -1.0 526,561 + HGI48_RS02430 0.36 -0.3 526,561 + -0.9 526,561 + HGI48_RS02430 0.36 +0.7 526,609 + HGI48_RS02430 0.39 +1.7 526,610 - HGI48_RS02430 0.39 -1.6 526,610 - +0.7 526,613 + HGI48_RS02430 0.39 +2.8 526,613 + HGI48_RS02430 0.39 -2.0 526,613 + HGI48_RS02430 0.39 -3.1 526,613 + HGI48_RS02430 0.39 -0.3 526,614 - HGI48_RS02430 0.39 +1.5 526,745 + -0.9 526,745 + HGI48_RS02430 0.47 +1.7 526,745 + HGI48_RS02430 0.47 -0.7 526,745 + HGI48_RS02430 0.47 -1.8 526,746 - HGI48_RS02430 0.47 +3.0 526,746 - +2.1 526,746 - HGI48_RS02430 0.47 +0.1 526,814 + HGI48_RS02430 0.51 -1.6 526,814 + HGI48_RS02430 0.51 +2.9 526,814 + HGI48_RS02430 0.51 -0.1 526,815 - HGI48_RS02430 0.51 +1.4 527,232 + -0.9 527,232 + HGI48_RS02430 0.75 +0.1 527,232 + HGI48_RS02430 0.75 -2.6 527,233 - HGI48_RS02430 0.75 +0.1 527,233 - HGI48_RS02430 0.75 -2.1 527,233 - HGI48_RS02430 0.75 -0.0 527,233 - HGI48_RS02430 0.75 -2.3 527,233 - HGI48_RS02430 0.75 -0.7 527,233 - +1.7 527,413 + HGI48_RS02430 0.85 -0.1 527,413 + HGI48_RS02430 0.85 -1.3 527,413 + -0.3 527,420 - HGI48_RS02430 0.86 -1.7 527,420 - HGI48_RS02430 0.86 +1.3 527,696 + +0.3 527,702 + +1.1 527,702 + -1.9 527,703 - +0.3 527,703 - -1.6 527,703 - -0.6 527,747 - -0.0 527,780 + +0.6 527,781 - +1.1 527,781 - +1.9 527,815 - +0.1 527,846 + -0.0 527,847 - -0.3 527,847 - +0.1 527,848 + -2.4 527,849 - -0.4 527,851 + +0.7 527,851 + +1.0 527,852 - -0.9 527,862 + +3.3 527,863 - +0.3 527,863 - +1.0 527,863 - +0.1 527,863 - +1.1 527,863 - -0.6 527,906 + -0.7 527,906 + +1.2 527,906 + +0.6 527,906 + +1.0 527,907 - -0.3 527,907 - -1.6 527,907 - +0.4 527,907 - -0.1 527,921 + -1.9 527,921 + +1.1 527,921 + +1.4 527,921 + -0.1 527,921 + -0.7 527,921 + +1.3 527,921 + -3.0 527,922 - -0.8 527,922 - +1.2 527,922 - -0.3 527,922 - -0.9 527,935 + +0.3 527,935 + -0.0 527,935 + -1.3 527,935 + -0.1 527,935 + -0.1 527,935 + +0.1 527,936 - +1.2 527,936 - +0.3 527,936 - -0.3 527,936 - +0.2 527,936 - +1.1 527,936 - -0.7 527,936 - +0.7 527,936 - -0.9 527,958 + -0.9 527,959 - +0.9 527,959 - -1.3 528,092 - -0.3 528,349 + HGI48_RS02435 0.24 -0.3 528,349 + HGI48_RS02435 0.24 +0.3 528,349 + HGI48_RS02435 0.24 -0.0 528,349 + HGI48_RS02435 0.24 -0.8 528,349 + HGI48_RS02435 0.24 -0.4 528,349 + HGI48_RS02435 0.24 +1.7 528,349 + HGI48_RS02435 0.24 -0.6 528,349 + HGI48_RS02435 0.24 -1.3 528,349 + HGI48_RS02435 0.24 -2.1 528,349 + HGI48_RS02435 0.24 -2.1 528,350 - HGI48_RS02435 0.24 -1.2 528,350 - HGI48_RS02435 0.24 -2.6 528,350 - HGI48_RS02435 0.24 -0.6 528,350 - HGI48_RS02435 0.24 +0.1 528,350 - HGI48_RS02435 0.24 +0.7 528,404 + HGI48_RS02435 0.29 -0.5 528,438 + HGI48_RS02435 0.32 +0.7 528,438 + HGI48_RS02435 0.32 -1.3 528,438 + HGI48_RS02435 0.32 -0.1 528,439 - HGI48_RS02435 0.32 -0.4 528,529 + HGI48_RS02435 0.39 +1.2 528,529 + +1.5 528,529 + HGI48_RS02435 0.39 +1.0 528,530 - HGI48_RS02435 0.39 -1.1 528,530 - HGI48_RS02435 0.39 -2.1 528,530 - HGI48_RS02435 0.39 -0.8 528,533 + +1.1 528,534 - HGI48_RS02435 0.40 -0.9 528,534 - HGI48_RS02435 0.40 +1.4
Or see this region's nucleotide sequence