Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02380

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02375 and HGI48_RS02380 are separated by 71 nucleotidesHGI48_RS02380 and HGI48_RS02385 are separated by 80 nucleotides HGI48_RS02375: HGI48_RS02375 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 514,203 to 515,459 _RS02375 HGI48_RS02380: HGI48_RS02380 - DNA repair protein RadA, at 515,531 to 516,916 _RS02380 HGI48_RS02385: HGI48_RS02385 - phosphoserine phosphatase, at 516,997 to 517,974 _RS02385 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.579 kb on + strand, within HGI48_RS02375at 514.580 kb on - strand, within HGI48_RS02375at 514.610 kb on - strand, within HGI48_RS02375at 514.623 kb on + strand, within HGI48_RS02375at 514.624 kb on - strand, within HGI48_RS02375at 514.624 kb on - strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.660 kb on + strand, within HGI48_RS02375at 514.661 kb on - strandat 514.661 kb on - strand, within HGI48_RS02375at 514.700 kb on + strand, within HGI48_RS02375at 514.796 kb on + strand, within HGI48_RS02375at 514.796 kb on + strand, within HGI48_RS02375at 514.796 kb on + strand, within HGI48_RS02375at 514.796 kb on + strand, within HGI48_RS02375at 514.796 kb on + strand, within HGI48_RS02375at 514.797 kb on - strandat 514.797 kb on - strand, within HGI48_RS02375at 514.797 kb on - strand, within HGI48_RS02375at 514.797 kb on - strand, within HGI48_RS02375at 514.797 kb on - strand, within HGI48_RS02375at 514.797 kb on - strand, within HGI48_RS02375at 514.797 kb on - strand, within HGI48_RS02375at 514.798 kb on + strand, within HGI48_RS02375at 514.798 kb on + strand, within HGI48_RS02375at 514.798 kb on + strandat 514.799 kb on - strand, within HGI48_RS02375at 514.799 kb on - strandat 514.799 kb on - strand, within HGI48_RS02375at 514.799 kb on - strand, within HGI48_RS02375at 514.799 kb on - strand, within HGI48_RS02375at 514.799 kb on - strand, within HGI48_RS02375at 514.799 kb on - strand, within HGI48_RS02375at 514.850 kb on + strand, within HGI48_RS02375at 514.851 kb on - strandat 514.851 kb on - strand, within HGI48_RS02375at 514.901 kb on + strand, within HGI48_RS02375at 514.901 kb on + strand, within HGI48_RS02375at 514.901 kb on + strand, within HGI48_RS02375at 514.901 kb on + strand, within HGI48_RS02375at 514.902 kb on - strand, within HGI48_RS02375at 514.902 kb on - strandat 514.902 kb on - strand, within HGI48_RS02375at 514.902 kb on - strand, within HGI48_RS02375at 514.903 kb on + strand, within HGI48_RS02375at 514.903 kb on + strandat 514.903 kb on + strand, within HGI48_RS02375at 514.903 kb on + strand, within HGI48_RS02375at 514.903 kb on + strand, within HGI48_RS02375at 514.904 kb on - strand, within HGI48_RS02375at 514.904 kb on - strand, within HGI48_RS02375at 514.904 kb on - strand, within HGI48_RS02375at 514.904 kb on - strand, within HGI48_RS02375at 515.063 kb on - strand, within HGI48_RS02375at 515.188 kb on - strand, within HGI48_RS02375at 515.215 kb on + strand, within HGI48_RS02375at 515.215 kb on + strand, within HGI48_RS02375at 515.278 kb on + strand, within HGI48_RS02375at 515.364 kb on + strandat 515.364 kb on + strandat 515.364 kb on + strandat 515.365 kb on - strandat 515.365 kb on - strandat 515.369 kb on - strandat 515.369 kb on - strandat 515.412 kb on - strandat 515.443 kb on + strandat 515.443 kb on + strandat 515.444 kb on - strandat 515.444 kb on - strandat 515.444 kb on - strandat 515.497 kb on + strandat 515.497 kb on + strandat 515.497 kb on + strandat 515.498 kb on - strandat 515.500 kb on + strandat 515.515 kb on + strandat 515.515 kb on + strandat 515.515 kb on + strandat 515.515 kb on + strandat 515.516 kb on - strandat 515.516 kb on - strandat 515.522 kb on + strandat 515.614 kb on + strandat 515.614 kb on + strandat 515.614 kb on + strandat 515.615 kb on - strandat 515.641 kb on + strandat 515.642 kb on - strandat 515.642 kb on - strandat 516.107 kb on + strand, within HGI48_RS02380at 516.108 kb on - strand, within HGI48_RS02380at 516.307 kb on - strand, within HGI48_RS02380at 516.464 kb on - strand, within HGI48_RS02380at 516.464 kb on - strand, within HGI48_RS02380at 516.464 kb on - strandat 516.464 kb on - strand, within HGI48_RS02380at 516.534 kb on + strand, within HGI48_RS02380at 516.807 kb on - strandat 516.883 kb on + strandat 516.883 kb on + strandat 516.884 kb on - strandat 516.884 kb on - strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.922 kb on - strandat 516.922 kb on - strandat 516.922 kb on - strandat 516.932 kb on + strandat 516.932 kb on + strandat 516.941 kb on + strandat 516.941 kb on + strandat 516.942 kb on - strandat 516.942 kb on - strandat 516.942 kb on - strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.945 kb on - strandat 516.945 kb on - strandat 516.957 kb on + strandat 516.958 kb on - strandat 517.227 kb on + strand, within HGI48_RS02385at 517.228 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.335 kb on - strand, within HGI48_RS02385at 517.335 kb on - strand, within HGI48_RS02385at 517.346 kb on + strand, within HGI48_RS02385at 517.346 kb on + strand, within HGI48_RS02385at 517.347 kb on - strand, within HGI48_RS02385at 517.593 kb on + strand, within HGI48_RS02385at 517.594 kb on - strand, within HGI48_RS02385at 517.594 kb on - strand, within HGI48_RS02385at 517.667 kb on + strand, within HGI48_RS02385at 517.667 kb on + strand, within HGI48_RS02385at 517.668 kb on - strand, within HGI48_RS02385at 517.817 kb on - strand, within HGI48_RS02385at 517.819 kb on + strand, within HGI48_RS02385at 517.819 kb on + strand, within HGI48_RS02385at 517.820 kb on - strand, within HGI48_RS02385at 517.820 kb on - strand, within HGI48_RS02385at 517.823 kb on + strand, within HGI48_RS02385at 517.823 kb on + strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.844 kb on + strand, within HGI48_RS02385at 517.844 kb on + strand, within HGI48_RS02385at 517.845 kb on - strand, within HGI48_RS02385at 517.874 kb on + strand, within HGI48_RS02385

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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514,579 + HGI48_RS02375 0.30 -1.8
514,580 - HGI48_RS02375 0.30 -1.3
514,610 - HGI48_RS02375 0.32 +1.5
514,623 + HGI48_RS02375 0.33 +0.2
514,624 - HGI48_RS02375 0.33 +0.8
514,624 - HGI48_RS02375 0.33 -0.3
514,660 + HGI48_RS02375 0.36 +0.6
514,660 + HGI48_RS02375 0.36 +0.4
514,660 + HGI48_RS02375 0.36 +0.7
514,660 + HGI48_RS02375 0.36 -2.1
514,660 + HGI48_RS02375 0.36 -0.3
514,660 + HGI48_RS02375 0.36 -2.6
514,660 + HGI48_RS02375 0.36 -0.3
514,660 + HGI48_RS02375 0.36 +0.2
514,660 + HGI48_RS02375 0.36 -0.1
514,660 + HGI48_RS02375 0.36 -0.3
514,660 + HGI48_RS02375 0.36 +0.5
514,661 - -0.8
514,661 - HGI48_RS02375 0.36 +0.4
514,700 + HGI48_RS02375 0.40 -0.0
514,796 + HGI48_RS02375 0.47 -0.3
514,796 + HGI48_RS02375 0.47 -1.3
514,796 + HGI48_RS02375 0.47 -1.4
514,796 + HGI48_RS02375 0.47 +0.5
514,796 + HGI48_RS02375 0.47 +0.2
514,797 - -0.3
514,797 - HGI48_RS02375 0.47 +1.4
514,797 - HGI48_RS02375 0.47 +0.3
514,797 - HGI48_RS02375 0.47 -0.1
514,797 - HGI48_RS02375 0.47 +0.2
514,797 - HGI48_RS02375 0.47 -0.4
514,797 - HGI48_RS02375 0.47 -0.3
514,798 + HGI48_RS02375 0.47 -0.3
514,798 + HGI48_RS02375 0.47 -0.3
514,798 + +0.7
514,799 - HGI48_RS02375 0.47 +0.4
514,799 - -0.8
514,799 - HGI48_RS02375 0.47 -2.8
514,799 - HGI48_RS02375 0.47 -0.2
514,799 - HGI48_RS02375 0.47 +1.2
514,799 - HGI48_RS02375 0.47 -0.7
514,799 - HGI48_RS02375 0.47 -0.3
514,850 + HGI48_RS02375 0.51 +0.4
514,851 - -0.8
514,851 - HGI48_RS02375 0.52 -1.8
514,901 + HGI48_RS02375 0.56 -0.3
514,901 + HGI48_RS02375 0.56 -0.4
514,901 + HGI48_RS02375 0.56 +0.2
514,901 + HGI48_RS02375 0.56 +2.4
514,902 - HGI48_RS02375 0.56 +0.7
514,902 - -0.8
514,902 - HGI48_RS02375 0.56 +0.4
514,902 - HGI48_RS02375 0.56 +1.7
514,903 + HGI48_RS02375 0.56 +0.4
514,903 + +1.7
514,903 + HGI48_RS02375 0.56 +0.4
514,903 + HGI48_RS02375 0.56 -1.4
514,903 + HGI48_RS02375 0.56 +1.2
514,904 - HGI48_RS02375 0.56 +0.4
514,904 - HGI48_RS02375 0.56 +0.1
514,904 - HGI48_RS02375 0.56 +0.6
514,904 - HGI48_RS02375 0.56 -1.8
515,063 - HGI48_RS02375 0.68 -0.0
515,188 - HGI48_RS02375 0.78 -1.4
515,215 + HGI48_RS02375 0.81 -2.3
515,215 + HGI48_RS02375 0.81 -0.6
515,278 + HGI48_RS02375 0.86 +0.2
515,364 + -0.0
515,364 + -1.6
515,364 + -3.1
515,365 - +0.7
515,365 - -1.8
515,369 - -0.6
515,369 - +0.0
515,412 - +0.2
515,443 + +1.7
515,443 + +1.9
515,444 - -0.7
515,444 - +0.7
515,444 - +0.9
515,497 + +0.0
515,497 + +0.5
515,497 + -0.5
515,498 - +0.4
515,500 + -1.8
515,515 + +1.3
515,515 + +1.0
515,515 + +2.3
515,515 + -2.3
515,516 - +0.4
515,516 - +1.0
515,522 + +1.5
515,614 + -0.1
515,614 + +1.0
515,614 + +0.9
515,615 - -0.1
515,641 + -0.3
515,642 - +0.1
515,642 - +2.1
516,107 + HGI48_RS02380 0.42 -0.7
516,108 - HGI48_RS02380 0.42 -1.6
516,307 - HGI48_RS02380 0.56 -0.8
516,464 - HGI48_RS02380 0.67 -0.4
516,464 - HGI48_RS02380 0.67 -2.4
516,464 - -0.3
516,464 - HGI48_RS02380 0.67 +0.1
516,534 + HGI48_RS02380 0.72 +2.1
516,807 - +1.0
516,883 + +0.7
516,883 + +0.7
516,884 - -2.4
516,884 - -0.3
516,921 + -1.3
516,921 + -1.1
516,921 + +0.9
516,921 + -1.4
516,921 + -0.5
516,922 - -1.1
516,922 - +0.9
516,922 - -1.6
516,932 + -2.3
516,932 + +2.0
516,941 + -0.2
516,941 + -2.1
516,942 - +0.2
516,942 - -0.2
516,942 - +0.7
516,944 + -0.7
516,944 + +0.4
516,944 + -1.8
516,944 + -2.1
516,944 + +0.6
516,945 - -2.1
516,945 - +0.3
516,957 + -0.5
516,958 - +1.3
517,227 + HGI48_RS02385 0.24 -3.3
517,228 - HGI48_RS02385 0.24 -2.2
517,230 - HGI48_RS02385 0.24 +1.0
517,230 - HGI48_RS02385 0.24 -0.8
517,230 - HGI48_RS02385 0.24 -1.3
517,334 + HGI48_RS02385 0.34 -2.1
517,334 + HGI48_RS02385 0.34 +1.9
517,334 + HGI48_RS02385 0.34 -3.7
517,335 - HGI48_RS02385 0.35 -0.1
517,335 - HGI48_RS02385 0.35 +0.7
517,346 + HGI48_RS02385 0.36 -2.0
517,346 + HGI48_RS02385 0.36 +0.9
517,347 - HGI48_RS02385 0.36 -1.6
517,593 + HGI48_RS02385 0.61 -3.1
517,594 - HGI48_RS02385 0.61 -1.8
517,594 - HGI48_RS02385 0.61 -0.3
517,667 + HGI48_RS02385 0.69 +0.7
517,667 + HGI48_RS02385 0.69 -1.6
517,668 - HGI48_RS02385 0.69 -0.3
517,817 - HGI48_RS02385 0.84 +1.1
517,819 + HGI48_RS02385 0.84 -3.2
517,819 + HGI48_RS02385 0.84 -2.8
517,820 - HGI48_RS02385 0.84 +0.3
517,820 - HGI48_RS02385 0.84 -1.8
517,823 + HGI48_RS02385 0.84 -0.8
517,823 + HGI48_RS02385 0.84 +0.6
517,824 - HGI48_RS02385 0.85 -1.8
517,824 - HGI48_RS02385 0.85 -1.4
517,824 - HGI48_RS02385 0.85 -1.3
517,824 - HGI48_RS02385 0.85 -0.7
517,844 + HGI48_RS02385 0.87 -0.7
517,844 + HGI48_RS02385 0.87 -0.9
517,845 - HGI48_RS02385 0.87 +1.1
517,874 + HGI48_RS02385 0.90 -1.3

Or see this region's nucleotide sequence