Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02325

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02320 and HGI48_RS02325 are separated by 384 nucleotidesHGI48_RS02325 and HGI48_RS02330 are separated by 53 nucleotides HGI48_RS02320: HGI48_RS02320 - ABC transporter substrate-binding protein, at 503,128 to 504,756 _RS02320 HGI48_RS02325: HGI48_RS02325 - LysE family translocator, at 505,141 to 505,776 _RS02325 HGI48_RS02330: HGI48_RS02330 - hypothetical protein, at 505,830 to 506,558 _RS02330 Position (kb) 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 504.144 kb on + strand, within HGI48_RS02320at 504.144 kb on + strand, within HGI48_RS02320at 504.145 kb on - strand, within HGI48_RS02320at 504.198 kb on - strand, within HGI48_RS02320at 504.221 kb on + strand, within HGI48_RS02320at 504.222 kb on - strand, within HGI48_RS02320at 504.264 kb on + strand, within HGI48_RS02320at 504.264 kb on + strand, within HGI48_RS02320at 504.264 kb on + strand, within HGI48_RS02320at 504.265 kb on - strand, within HGI48_RS02320at 504.265 kb on - strandat 504.265 kb on - strand, within HGI48_RS02320at 504.267 kb on - strand, within HGI48_RS02320at 504.284 kb on + strand, within HGI48_RS02320at 504.284 kb on + strand, within HGI48_RS02320at 504.285 kb on - strand, within HGI48_RS02320at 504.336 kb on - strand, within HGI48_RS02320at 504.377 kb on + strand, within HGI48_RS02320at 504.377 kb on + strand, within HGI48_RS02320at 504.377 kb on + strand, within HGI48_RS02320at 504.378 kb on - strand, within HGI48_RS02320at 504.444 kb on + strand, within HGI48_RS02320at 504.444 kb on + strand, within HGI48_RS02320at 504.445 kb on - strand, within HGI48_RS02320at 504.445 kb on - strand, within HGI48_RS02320at 504.445 kb on - strand, within HGI48_RS02320at 504.446 kb on + strand, within HGI48_RS02320at 504.496 kb on - strand, within HGI48_RS02320at 504.566 kb on + strand, within HGI48_RS02320at 504.567 kb on - strand, within HGI48_RS02320at 504.567 kb on - strand, within HGI48_RS02320at 504.781 kb on + strandat 504.781 kb on + strandat 504.781 kb on + strandat 504.781 kb on + strandat 504.782 kb on - strandat 504.782 kb on - strandat 504.796 kb on + strandat 504.796 kb on + strandat 504.796 kb on + strandat 504.796 kb on + strandat 504.797 kb on - strandat 504.797 kb on - strandat 504.797 kb on - strandat 504.797 kb on - strandat 504.800 kb on + strandat 504.800 kb on + strandat 504.800 kb on + strandat 504.800 kb on + strandat 504.800 kb on + strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.801 kb on - strandat 504.802 kb on + strandat 504.803 kb on - strandat 504.803 kb on - strandat 504.810 kb on + strandat 504.810 kb on + strandat 504.811 kb on - strandat 504.815 kb on + strandat 504.815 kb on + strandat 504.815 kb on + strandat 504.815 kb on + strandat 504.816 kb on - strandat 504.816 kb on - strandat 504.837 kb on - strandat 504.837 kb on - strandat 504.901 kb on + strandat 504.933 kb on + strandat 504.934 kb on - strandat 505.009 kb on + strandat 505.012 kb on + strandat 505.013 kb on - strandat 505.014 kb on + strandat 505.014 kb on + strandat 505.015 kb on - strandat 505.015 kb on - strandat 505.025 kb on - strandat 505.106 kb on + strandat 505.224 kb on - strand, within HGI48_RS02325at 505.280 kb on + strand, within HGI48_RS02325at 505.281 kb on - strand, within HGI48_RS02325at 505.282 kb on + strandat 505.283 kb on - strandat 505.325 kb on - strand, within HGI48_RS02325at 505.327 kb on + strand, within HGI48_RS02325at 505.365 kb on + strand, within HGI48_RS02325at 505.471 kb on + strand, within HGI48_RS02325at 505.557 kb on + strandat 505.686 kb on + strand, within HGI48_RS02325at 505.708 kb on + strand, within HGI48_RS02325at 505.708 kb on + strand, within HGI48_RS02325at 505.758 kb on - strandat 505.758 kb on - strandat 505.759 kb on + strandat 505.912 kb on - strand, within HGI48_RS02330at 505.926 kb on - strand, within HGI48_RS02330at 505.937 kb on - strand, within HGI48_RS02330at 506.038 kb on - strand, within HGI48_RS02330at 506.078 kb on - strand, within HGI48_RS02330at 506.272 kb on + strand, within HGI48_RS02330at 506.309 kb on + strand, within HGI48_RS02330at 506.358 kb on - strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.361 kb on - strand, within HGI48_RS02330at 506.387 kb on - strand, within HGI48_RS02330at 506.496 kb on + strandat 506.555 kb on - strandat 506.559 kb on - strandat 506.596 kb on - strandat 506.628 kb on - strandat 506.648 kb on - strandat 506.661 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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504,144 + HGI48_RS02320 0.62 -1.6
504,144 + HGI48_RS02320 0.62 +0.3
504,145 - HGI48_RS02320 0.62 -2.4
504,198 - HGI48_RS02320 0.66 -1.1
504,221 + HGI48_RS02320 0.67 -0.8
504,222 - HGI48_RS02320 0.67 +0.7
504,264 + HGI48_RS02320 0.70 +1.4
504,264 + HGI48_RS02320 0.70 -1.0
504,264 + HGI48_RS02320 0.70 +0.7
504,265 - HGI48_RS02320 0.70 -0.9
504,265 - +2.1
504,265 - HGI48_RS02320 0.70 -0.0
504,267 - HGI48_RS02320 0.70 +0.3
504,284 + HGI48_RS02320 0.71 -0.0
504,284 + HGI48_RS02320 0.71 -1.3
504,285 - HGI48_RS02320 0.71 -1.0
504,336 - HGI48_RS02320 0.74 -1.3
504,377 + HGI48_RS02320 0.77 +1.1
504,377 + HGI48_RS02320 0.77 +1.1
504,377 + HGI48_RS02320 0.77 +0.2
504,378 - HGI48_RS02320 0.77 -2.1
504,444 + HGI48_RS02320 0.81 -0.8
504,444 + HGI48_RS02320 0.81 -2.3
504,445 - HGI48_RS02320 0.81 +0.6
504,445 - HGI48_RS02320 0.81 -0.2
504,445 - HGI48_RS02320 0.81 +0.4
504,446 + HGI48_RS02320 0.81 -1.6
504,496 - HGI48_RS02320 0.84 -0.0
504,566 + HGI48_RS02320 0.88 -0.4
504,567 - HGI48_RS02320 0.88 -1.6
504,567 - HGI48_RS02320 0.88 +1.9
504,781 + +1.3
504,781 + +0.5
504,781 + +0.2
504,781 + +1.0
504,782 - -1.6
504,782 - -1.6
504,796 + +0.3
504,796 + +1.4
504,796 + +0.2
504,796 + -2.6
504,797 - +0.8
504,797 - +0.5
504,797 - -1.5
504,797 - +2.1
504,800 + -1.6
504,800 + +0.6
504,800 + -0.8
504,800 + -1.3
504,800 + +1.1
504,801 - +0.5
504,801 - +1.1
504,801 - -0.4
504,801 - -0.1
504,801 - -0.2
504,801 - +1.7
504,801 - -2.6
504,801 - +0.2
504,801 - -1.1
504,802 + +0.3
504,803 - -0.3
504,803 - -2.3
504,810 + -0.5
504,810 + -0.1
504,811 - -2.4
504,815 + -1.6
504,815 + +2.5
504,815 + -2.1
504,815 + +1.3
504,816 - +1.2
504,816 - +1.2
504,837 - +0.5
504,837 - +0.7
504,901 + -0.1
504,933 + +1.1
504,934 - -1.3
505,009 + -0.6
505,012 + -1.0
505,013 - +0.1
505,014 + +3.1
505,014 + +0.7
505,015 - -1.8
505,015 - -1.8
505,025 - +1.2
505,106 + -0.0
505,224 - HGI48_RS02325 0.13 +0.3
505,280 + HGI48_RS02325 0.22 -0.1
505,281 - HGI48_RS02325 0.22 +0.7
505,282 + -0.8
505,283 - +0.7
505,325 - HGI48_RS02325 0.29 +0.1
505,327 + HGI48_RS02325 0.29 +1.1
505,365 + HGI48_RS02325 0.35 +0.7
505,471 + HGI48_RS02325 0.52 +0.5
505,557 + +1.2
505,686 + HGI48_RS02325 0.86 -0.1
505,708 + HGI48_RS02325 0.89 +1.6
505,708 + HGI48_RS02325 0.89 +0.6
505,758 - +1.7
505,758 - +0.0
505,759 + -0.0
505,912 - HGI48_RS02330 0.11 -1.8
505,926 - HGI48_RS02330 0.13 +0.4
505,937 - HGI48_RS02330 0.15 -1.3
506,038 - HGI48_RS02330 0.29 +0.4
506,078 - HGI48_RS02330 0.34 +0.5
506,272 + HGI48_RS02330 0.61 +0.3
506,309 + HGI48_RS02330 0.66 +0.0
506,358 - HGI48_RS02330 0.72 -2.8
506,360 + HGI48_RS02330 0.73 -0.8
506,360 + HGI48_RS02330 0.73 +1.0
506,361 - HGI48_RS02330 0.73 +1.0
506,387 - HGI48_RS02330 0.76 +0.3
506,496 + -1.3
506,555 - -0.8
506,559 - -0.0
506,596 - -0.1
506,628 - -1.6
506,648 - +0.2
506,661 + +1.4

Or see this region's nucleotide sequence