Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02035

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02030 and HGI48_RS02035 overlap by 1 nucleotidesHGI48_RS02035 and HGI48_RS02040 are separated by 286 nucleotidesHGI48_RS02040 and HGI48_RS02045 overlap by 10 nucleotides HGI48_RS02030: HGI48_RS02030 - SIR2 family protein, at 446,016 to 447,320 _RS02030 HGI48_RS02035: HGI48_RS02035 - ATP-binding protein, at 447,320 to 449,041 _RS02035 HGI48_RS02040: HGI48_RS02040 - GNAT family N-acetyltransferase, at 449,328 to 449,807 _RS02040 HGI48_RS02045: HGI48_RS02045 - DUF1778 domain-containing protein, at 449,798 to 450,070 _RS02045 Position (kb) 447 448 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 446.337 kb on - strand, within HGI48_RS02030at 446.337 kb on - strand, within HGI48_RS02030at 446.337 kb on - strandat 446.408 kb on - strand, within HGI48_RS02030at 446.408 kb on - strand, within HGI48_RS02030at 446.478 kb on + strand, within HGI48_RS02030at 446.536 kb on + strand, within HGI48_RS02030at 446.593 kb on - strand, within HGI48_RS02030at 446.594 kb on + strand, within HGI48_RS02030at 446.594 kb on + strandat 446.595 kb on - strand, within HGI48_RS02030at 446.595 kb on - strand, within HGI48_RS02030at 446.654 kb on + strand, within HGI48_RS02030at 446.804 kb on + strand, within HGI48_RS02030at 446.826 kb on + strand, within HGI48_RS02030at 446.828 kb on + strand, within HGI48_RS02030at 447.036 kb on - strand, within HGI48_RS02030at 447.060 kb on - strand, within HGI48_RS02030at 447.063 kb on + strandat 447.071 kb on + strand, within HGI48_RS02030at 447.158 kb on + strand, within HGI48_RS02030at 447.206 kb on - strandat 447.247 kb on + strandat 447.382 kb on - strandat 447.446 kb on + strandat 447.460 kb on + strandat 447.460 kb on + strandat 447.619 kb on - strand, within HGI48_RS02035at 447.818 kb on - strandat 447.870 kb on + strand, within HGI48_RS02035at 447.953 kb on - strand, within HGI48_RS02035at 447.953 kb on - strand, within HGI48_RS02035at 447.964 kb on + strand, within HGI48_RS02035at 447.964 kb on + strand, within HGI48_RS02035at 448.165 kb on + strand, within HGI48_RS02035at 448.166 kb on - strand, within HGI48_RS02035at 448.242 kb on + strand, within HGI48_RS02035at 448.579 kb on - strand, within HGI48_RS02035at 448.604 kb on - strandat 448.604 kb on - strand, within HGI48_RS02035at 448.669 kb on + strandat 448.670 kb on - strand, within HGI48_RS02035at 448.753 kb on + strand, within HGI48_RS02035at 448.753 kb on + strand, within HGI48_RS02035at 448.754 kb on - strand, within HGI48_RS02035at 448.755 kb on + strand, within HGI48_RS02035at 448.755 kb on + strand, within HGI48_RS02035at 448.755 kb on + strand, within HGI48_RS02035at 448.756 kb on - strand, within HGI48_RS02035at 448.756 kb on - strand, within HGI48_RS02035at 448.762 kb on + strand, within HGI48_RS02035at 448.783 kb on + strand, within HGI48_RS02035at 448.837 kb on + strand, within HGI48_RS02035at 448.849 kb on + strand, within HGI48_RS02035at 448.960 kb on + strandat 448.961 kb on - strandat 449.051 kb on + strandat 449.089 kb on - strandat 449.100 kb on - strandat 449.131 kb on + strandat 449.225 kb on - strandat 449.314 kb on - strandat 449.314 kb on - strandat 449.329 kb on + strandat 449.330 kb on - strandat 449.343 kb on + strandat 449.343 kb on + strandat 449.344 kb on - strandat 449.387 kb on - strand, within HGI48_RS02040at 449.415 kb on + strand, within HGI48_RS02040at 449.475 kb on + strand, within HGI48_RS02040at 449.510 kb on + strand, within HGI48_RS02040at 449.510 kb on + strand, within HGI48_RS02040at 449.547 kb on + strand, within HGI48_RS02040at 449.547 kb on + strand, within HGI48_RS02040at 449.573 kb on + strand, within HGI48_RS02040at 449.573 kb on + strand, within HGI48_RS02040at 449.633 kb on - strand, within HGI48_RS02040at 449.633 kb on - strand, within HGI48_RS02040at 449.784 kb on + strandat 449.784 kb on + strandat 449.784 kb on + strandat 449.785 kb on - strandat 449.886 kb on + strand, within HGI48_RS02045at 449.886 kb on + strand, within HGI48_RS02045at 449.886 kb on + strand, within HGI48_RS02045at 449.886 kb on + strand, within HGI48_RS02045at 449.886 kb on + strand, within HGI48_RS02045at 449.887 kb on - strandat 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 449.887 kb on - strand, within HGI48_RS02045at 450.028 kb on + strand, within HGI48_RS02045at 450.029 kb on - strand, within HGI48_RS02045at 450.037 kb on + strandat 450.037 kb on + strand, within HGI48_RS02045at 450.041 kb on - strand, within HGI48_RS02045

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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446,337 - HGI48_RS02030 0.25 -0.6
446,337 - HGI48_RS02030 0.25 -1.6
446,337 - -0.8
446,408 - HGI48_RS02030 0.30 -0.0
446,408 - HGI48_RS02030 0.30 -1.2
446,478 + HGI48_RS02030 0.35 +0.4
446,536 + HGI48_RS02030 0.40 +0.4
446,593 - HGI48_RS02030 0.44 -1.6
446,594 + HGI48_RS02030 0.44 +0.4
446,594 + +2.6
446,595 - HGI48_RS02030 0.44 +2.2
446,595 - HGI48_RS02030 0.44 +2.4
446,654 + HGI48_RS02030 0.49 -0.1
446,804 + HGI48_RS02030 0.60 +2.8
446,826 + HGI48_RS02030 0.62 +0.3
446,828 + HGI48_RS02030 0.62 +2.3
447,036 - HGI48_RS02030 0.78 +0.9
447,060 - HGI48_RS02030 0.80 +0.0
447,063 + +3.1
447,071 + HGI48_RS02030 0.81 +0.2
447,158 + HGI48_RS02030 0.88 +0.3
447,206 - -1.8
447,247 + +1.0
447,382 - +1.1
447,446 + -0.4
447,460 + -1.8
447,460 + -0.4
447,619 - HGI48_RS02035 0.17 -2.4
447,818 - +1.2
447,870 + HGI48_RS02035 0.32 +1.3
447,953 - HGI48_RS02035 0.37 +0.2
447,953 - HGI48_RS02035 0.37 +1.8
447,964 + HGI48_RS02035 0.37 -1.2
447,964 + HGI48_RS02035 0.37 +0.4
448,165 + HGI48_RS02035 0.49 -1.4
448,166 - HGI48_RS02035 0.49 -1.1
448,242 + HGI48_RS02035 0.54 +0.9
448,579 - HGI48_RS02035 0.73 +1.4
448,604 - -0.2
448,604 - HGI48_RS02035 0.75 +1.3
448,669 + +1.3
448,670 - HGI48_RS02035 0.78 +1.6
448,753 + HGI48_RS02035 0.83 +1.9
448,753 + HGI48_RS02035 0.83 +0.8
448,754 - HGI48_RS02035 0.83 -0.0
448,755 + HGI48_RS02035 0.83 +0.3
448,755 + HGI48_RS02035 0.83 +0.3
448,755 + HGI48_RS02035 0.83 +0.4
448,756 - HGI48_RS02035 0.83 -2.9
448,756 - HGI48_RS02035 0.83 -1.8
448,762 + HGI48_RS02035 0.84 -0.9
448,783 + HGI48_RS02035 0.85 -0.8
448,837 + HGI48_RS02035 0.88 +0.0
448,849 + HGI48_RS02035 0.89 -2.2
448,960 + +0.9
448,961 - -0.8
449,051 + -0.5
449,089 - -0.1
449,100 - -2.2
449,131 + -1.8
449,225 - -1.3
449,314 - -1.2
449,314 - +0.2
449,329 + -0.7
449,330 - +0.8
449,343 + -0.8
449,343 + -1.6
449,344 - -0.5
449,387 - HGI48_RS02040 0.12 -0.1
449,415 + HGI48_RS02040 0.18 -1.6
449,475 + HGI48_RS02040 0.31 -1.7
449,510 + HGI48_RS02040 0.38 -0.2
449,510 + HGI48_RS02040 0.38 +0.0
449,547 + HGI48_RS02040 0.46 -1.8
449,547 + HGI48_RS02040 0.46 -1.8
449,573 + HGI48_RS02040 0.51 -1.6
449,573 + HGI48_RS02040 0.51 -1.8
449,633 - HGI48_RS02040 0.64 -1.8
449,633 - HGI48_RS02040 0.64 -0.1
449,784 + -2.6
449,784 + -0.2
449,784 + +1.0
449,785 - -1.6
449,886 + HGI48_RS02045 0.32 +1.0
449,886 + HGI48_RS02045 0.32 -0.7
449,886 + HGI48_RS02045 0.32 -0.9
449,886 + HGI48_RS02045 0.32 -0.1
449,886 + HGI48_RS02045 0.32 -1.2
449,887 - -0.8
449,887 - HGI48_RS02045 0.33 -1.8
449,887 - HGI48_RS02045 0.33 +2.8
449,887 - HGI48_RS02045 0.33 -1.3
449,887 - HGI48_RS02045 0.33 -2.4
449,887 - HGI48_RS02045 0.33 -0.1
449,887 - HGI48_RS02045 0.33 +1.2
449,887 - HGI48_RS02045 0.33 +1.0
449,887 - HGI48_RS02045 0.33 +0.3
450,028 + HGI48_RS02045 0.84 +0.4
450,029 - HGI48_RS02045 0.85 +1.3
450,037 + +0.8
450,037 + HGI48_RS02045 0.88 +1.1
450,041 - HGI48_RS02045 0.89 +2.6

Or see this region's nucleotide sequence