Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20320

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,542,562	+		HGI48_RS20310	0.63	-0.1
4,542,562	+		HGI48_RS20310	0.63	+0.3
4,542,562	+		HGI48_RS20310	0.63	-0.3
4,542,562	+		HGI48_RS20310	0.63	+0.5
4,542,562	+		HGI48_RS20310	0.63	+1.0
4,542,562	+		HGI48_RS20310	0.63	+0.2
4,542,562	+		HGI48_RS20310	0.63	+0.4
4,542,562	+		HGI48_RS20310	0.63	-0.6
4,542,562	+		HGI48_RS20310	0.63	-0.7
4,542,562	+		HGI48_RS20310	0.63	-0.6
4,542,563	-		HGI48_RS20310	0.63	+0.6
4,542,563	-		HGI48_RS20310	0.63	-0.6
4,542,563	-		HGI48_RS20310	0.63	+0.4
4,542,563	-		HGI48_RS20310	0.63	-0.8
4,542,563	-		HGI48_RS20310	0.63	-0.0
4,542,563	-		HGI48_RS20310	0.63	+0.7
4,542,633	+		HGI48_RS20310	0.68	+0.6
4,542,633	+		HGI48_RS20310	0.68	-0.4
4,542,633	+		HGI48_RS20310	0.68	-1.8
4,542,633	+		HGI48_RS20310	0.68	+0.4
4,542,633	+		HGI48_RS20310	0.68	-0.1
4,542,633	+		HGI48_RS20310	0.68	-1.1
4,542,634	-		HGI48_RS20310	0.68	-0.3
4,542,634	-		HGI48_RS20310	0.68	+0.2
4,542,634	-		HGI48_RS20310	0.68	-0.8
4,542,634	-		HGI48_RS20310	0.68	+0.4
4,542,634	-		HGI48_RS20310	0.68	-0.7
4,542,634	-		HGI48_RS20310	0.68	+0.4
4,542,698	+		HGI48_RS20310	0.72	+0.2
4,542,698	+		HGI48_RS20310	0.72	-2.0
4,542,699	-		HGI48_RS20310	0.72	+0.9
4,542,825	+		HGI48_RS20310	0.79	+1.6
4,542,825	+		HGI48_RS20310	0.79	+0.5
4,542,825	+		HGI48_RS20310	0.79	-0.6
4,542,825	+		HGI48_RS20310	0.79	-1.1
4,542,826	-				+1.2
4,542,826	-		HGI48_RS20310	0.79	+0.4
4,542,826	-		HGI48_RS20310	0.79	-0.6
4,542,826	-		HGI48_RS20310	0.79	-1.6
4,543,063	+				-0.4
4,543,063	+				-0.3
4,543,064	-				-1.6
4,543,064	-				-0.1
4,543,064	-				-1.7
4,543,075	+				+0.7
4,543,075	+				+0.2
4,543,076	-				-2.8
4,543,076	-				+0.0
4,543,085	+				+1.2
4,543,143	+				+1.7
4,543,144	-				-1.3
4,543,166	+				+0.4
4,543,166	+				-0.3
4,543,166	+				+1.2
4,543,166	+				-0.7
4,543,167	-				-1.6
4,543,171	-				-0.3
4,543,171	-				+0.6
4,543,171	-				+0.4
4,543,171	-				-0.3
4,543,171	-				+0.7
4,543,184	+				+0.3
4,543,205	+				-0.5
4,543,205	+				+0.0
4,543,220	+				+1.6
4,543,220	+				+1.4
4,543,221	-				-0.5
4,543,224	+				+0.1
4,543,224	+				+0.3
4,543,224	+				-3.0
4,543,225	-				+0.2
4,543,225	-				+1.7
4,543,225	-				-0.4
4,543,347	+		HGI48_RS20315	0.41	-1.0
4,543,424	+				+0.0
4,543,424	+				-0.7
4,543,425	-				-2.1
4,543,425	-				+0.4
4,543,425	-				-0.3
4,543,425	-				+1.1
4,543,425	-				+0.3
4,543,439	-				+0.3
4,543,442	+				+1.4
4,543,442	+				+0.6
4,543,443	-				-0.4
4,543,443	-				-1.4
4,543,443	-				+0.4
4,543,443	-				+1.5
4,543,450	+				-1.6
4,543,451	-				+0.3
4,543,451	-				-3.0
4,543,548	+				-0.1
4,543,549	-				-0.4
4,543,648	+				+1.3
4,543,659	+				+1.3
4,543,659	+				+1.7
4,543,659	+				+0.9
4,543,659	+				-0.8
4,543,659	+				+1.6
4,543,659	+				+1.7
4,543,659	+				-0.1
4,543,659	+				-0.0
4,543,659	+				+3.4
4,543,660	-				-0.7
4,543,660	-				-1.7
4,543,660	-				-0.0
4,543,660	-				+0.0
4,543,660	-				+1.1
4,543,660	-				+0.7
4,543,660	-				-1.4
4,543,663	+				+0.1
4,543,664	-				+0.5
4,543,664	-				-1.3
4,543,664	-				-1.3
4,543,664	-				+0.7
4,543,664	-				-2.0
4,543,664	-				-1.6
4,543,664	-				+1.1
4,543,664	-				-1.4
4,543,682	+		HGI48_RS20320	0.11	+1.6
4,543,682	+		HGI48_RS20320	0.11	-1.1
4,543,682	+		HGI48_RS20320	0.11	-0.2
4,543,682	+				+1.5
4,543,683	-		HGI48_RS20320	0.11	+0.1
4,543,683	-		HGI48_RS20320	0.11	-0.1
4,543,683	-		HGI48_RS20320	0.11	-0.6
4,543,683	-		HGI48_RS20320	0.11	-0.8
4,543,683	-		HGI48_RS20320	0.11	+0.9
4,543,683	-		HGI48_RS20320	0.11	-1.8
4,543,683	-				+0.2
4,543,683	-		HGI48_RS20320	0.11	+0.0
4,543,735	-		HGI48_RS20320	0.16	-2.6
4,543,762	+		HGI48_RS20320	0.18	+0.4
4,543,763	-		HGI48_RS20320	0.18	-2.1
4,543,817	+		HGI48_RS20320	0.22	-0.5
4,543,817	+		HGI48_RS20320	0.22	-2.3
4,543,818	-		HGI48_RS20320	0.22	-1.3
4,543,818	-		HGI48_RS20320	0.22	+0.3
4,543,818	-		HGI48_RS20320	0.22	-0.4
4,543,888	+		HGI48_RS20320	0.28	+0.2
4,543,918	+		HGI48_RS20320	0.31	+0.7
4,543,987	+		HGI48_RS20320	0.36	-2.1
4,543,988	-		HGI48_RS20320	0.36	-1.1
4,543,992	+		HGI48_RS20320	0.37	-1.7
4,543,992	+		HGI48_RS20320	0.37	-1.7
4,543,993	-		HGI48_RS20320	0.37	+0.9
4,543,993	-		HGI48_RS20320	0.37	-0.6
4,543,993	-		HGI48_RS20320	0.37	+0.7
4,543,993	-		HGI48_RS20320	0.37	-0.8
4,543,993	-		HGI48_RS20320	0.37	+0.9
4,543,996	+				+0.7
4,543,996	+		HGI48_RS20320	0.37	-1.6
4,543,996	+		HGI48_RS20320	0.37	-1.0
4,543,996	+		HGI48_RS20320	0.37	+0.0
4,543,997	-		HGI48_RS20320	0.37	-0.6
4,543,997	-		HGI48_RS20320	0.37	+0.3
4,544,007	-				-0.8
4,544,008	+		HGI48_RS20320	0.38	-0.0
4,544,008	+		HGI48_RS20320	0.38	-0.3
4,544,008	+		HGI48_RS20320	0.38	-0.3
4,544,008	+		HGI48_RS20320	0.38	-1.3
4,544,008	+		HGI48_RS20320	0.38	-1.4
4,544,008	+		HGI48_RS20320	0.38	+1.2
4,544,008	+		HGI48_RS20320	0.38	+0.4
4,544,009	-		HGI48_RS20320	0.38	+0.2
4,544,009	-		HGI48_RS20320	0.38	+0.7
4,544,009	-		HGI48_RS20320	0.38	-1.1
4,544,072	-		HGI48_RS20320	0.43	-0.3
4,544,103	-		HGI48_RS20320	0.46	+0.4
4,544,105	+		HGI48_RS20320	0.46	+0.0
4,544,105	+		HGI48_RS20320	0.46	-1.3
4,544,106	-				+1.7
4,544,106	-		HGI48_RS20320	0.46	-0.6
4,544,115	+		HGI48_RS20320	0.47	-2.4
4,544,115	+		HGI48_RS20320	0.47	-0.3
4,544,174	+		HGI48_RS20320	0.52	-0.6
4,544,217	+		HGI48_RS20320	0.55	+1.6
4,544,222	-				-0.8
4,544,222	-		HGI48_RS20320	0.56	-0.1
4,544,239	+		HGI48_RS20320	0.57	+0.7
4,544,239	+		HGI48_RS20320	0.57	-0.1
4,544,257	+		HGI48_RS20320	0.59	-0.1
4,544,257	+		HGI48_RS20320	0.59	+0.2
4,544,258	-		HGI48_RS20320	0.59	-0.5
4,544,298	+		HGI48_RS20320	0.62	+0.0
4,544,303	+		HGI48_RS20320	0.62	+0.7
4,544,304	-		HGI48_RS20320	0.62	+0.4
4,544,304	-		HGI48_RS20320	0.62	+0.9
4,544,381	-		HGI48_RS20320	0.69	+0.7
4,544,436	+		HGI48_RS20320	0.73	+0.1
4,544,436	+		HGI48_RS20320	0.73	-0.6
4,544,436	+		HGI48_RS20320	0.73	-2.1
4,544,437	-		HGI48_RS20320	0.73	-2.0
4,544,437	-		HGI48_RS20320	0.73	-1.3
4,544,437	-		HGI48_RS20320	0.73	-0.3
4,544,437	-		HGI48_RS20320	0.73	-0.5
4,544,437	-		HGI48_RS20320	0.73	-1.3
4,544,437	-		HGI48_RS20320	0.73	+0.5
4,544,437	-		HGI48_RS20320	0.73	-0.2
4,544,447	+		HGI48_RS20320	0.74	-1.6
4,544,459	+		HGI48_RS20320	0.75	-1.6
4,544,460	-		HGI48_RS20320	0.75	+0.5
4,544,460	-		HGI48_RS20320	0.75	+0.1
4,544,460	-		HGI48_RS20320	0.75	-1.0
4,544,464	+		HGI48_RS20320	0.76	+0.9
4,544,464	+		HGI48_RS20320	0.76	-1.6
4,544,465	-		HGI48_RS20320	0.76	+0.6
4,544,465	-		HGI48_RS20320	0.76	+0.8
4,544,468	-		HGI48_RS20320	0.76	+0.3
4,544,609	-		HGI48_RS20320	0.88	-0.6
4,544,731	+				-1.4
4,544,731	+				+1.3
4,544,731	+				+1.3
4,544,731	+				-0.5
4,544,731	+				+1.3
4,544,731	+				+0.2
4,544,732	-				+1.3
4,544,732	-				+0.6
4,544,732	-				+0.9
4,544,732	-				+0.3
4,544,732	-				-2.1
4,544,732	-				-1.8
4,544,759	-				+0.6
4,544,773	+				+2.1
4,544,773	+				-0.6
4,544,773	+				-0.2
4,544,855	+				+0.2
4,544,879	-				-0.3
4,544,883	-				-2.3
4,544,919	+				+1.2
4,544,919	+				-0.3
4,544,919	+				-0.7
4,544,919	+				+1.0
4,544,920	-				+0.4
4,545,021	+				-1.3
4,545,021	+				-0.1
4,545,022	-				-1.8
4,545,023	+				-2.6
4,545,023	+				-0.5
4,545,024	-				-0.5
4,545,024	-				+0.4
4,545,087	+				-0.3
4,545,087	+				+1.5
4,545,088	-				+2.0
4,545,128	+				+0.9
4,545,128	+				-0.6
4,545,128	+				+0.6
4,545,128	+				+1.7
4,545,128	+				+0.2
4,545,129	-				-2.8
4,545,129	-				-0.2
4,545,131	-				-0.7
4,545,131	-				-1.8
4,545,131	-				+0.9
4,545,131	-				+1.4
4,545,182	-				-1.5
4,545,187	+				-0.1
4,545,350	+				+1.5
4,545,350	+				-0.3
4,545,646	+		HGI48_RS20325	0.35	+1.3
4,545,647	-		HGI48_RS20325	0.35	+1.2
4,545,668	-		HGI48_RS20325	0.37	+0.4
4,545,712	+		HGI48_RS20325	0.39	+1.6
4,545,712	+		HGI48_RS20325	0.39	+0.3
4,545,713	-		HGI48_RS20325	0.39	+0.0
4,545,748	+		HGI48_RS20325	0.42	+0.2
4,545,748	+		HGI48_RS20325	0.42	-0.1
4,545,749	-		HGI48_RS20325	0.42	-1.3
4,545,749	-		HGI48_RS20325	0.42	+0.9
4,545,749	-		HGI48_RS20325	0.42	-0.6
4,545,749	-		HGI48_RS20325	0.42	-0.8
4,545,749	-		HGI48_RS20325	0.42	+1.1
4,545,756	+		HGI48_RS20325	0.42	-0.8
4,545,757	-		HGI48_RS20325	0.42	-1.3
4,545,757	-		HGI48_RS20325	0.42	-0.7