Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20165

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,502,204	+		HGI48_RS20160	0.54	+0.6
4,502,368	+		HGI48_RS20160	0.66	-1.2
4,502,368	+		HGI48_RS20160	0.66	-0.1
4,502,369	-		HGI48_RS20160	0.66	-0.6
4,502,369	-		HGI48_RS20160	0.66	-2.3
4,502,405	+		HGI48_RS20160	0.68	-1.1
4,502,405	+		HGI48_RS20160	0.68	-2.4
4,502,405	+		HGI48_RS20160	0.68	-1.4
4,502,501	+				+2.6
4,502,501	+		HGI48_RS20160	0.75	-0.0
4,502,501	+		HGI48_RS20160	0.75	+1.0
4,502,501	+		HGI48_RS20160	0.75	-0.5
4,502,501	+		HGI48_RS20160	0.75	+0.6
4,502,501	+				+0.8
4,502,501	+		HGI48_RS20160	0.75	+0.3
4,502,501	+				-0.8
4,502,502	-		HGI48_RS20160	0.75	-1.2
4,502,502	-		HGI48_RS20160	0.75	+0.8
4,502,502	-				+0.8
4,502,502	-		HGI48_RS20160	0.75	-0.6
4,502,594	+		HGI48_RS20160	0.82	-1.1
4,502,594	+		HGI48_RS20160	0.82	-0.7
4,502,594	+		HGI48_RS20160	0.82	-0.1
4,502,594	+		HGI48_RS20160	0.82	+1.1
4,502,594	+		HGI48_RS20160	0.82	-0.6
4,502,595	-		HGI48_RS20160	0.82	-1.0
4,502,694	+		HGI48_RS20160	0.89	+1.9
4,502,695	-		HGI48_RS20160	0.89	+0.5
4,502,695	-		HGI48_RS20160	0.89	-0.5
4,502,695	-		HGI48_RS20160	0.89	-0.2
4,502,696	+				+0.2
4,502,696	+		HGI48_RS20160	0.89	-1.4
4,502,696	+		HGI48_RS20160	0.89	-0.4
4,502,697	-		HGI48_RS20160	0.89	+0.5
4,502,697	-				+1.8
4,502,697	-		HGI48_RS20160	0.89	-1.6
4,502,697	-		HGI48_RS20160	0.89	+1.6
4,502,793	+				+0.9
4,502,794	-				+1.1
4,502,794	-				-1.0
4,502,794	-				+0.2
4,502,838	+				+1.5
4,502,839	-				-2.7
4,502,839	-				-0.5
4,502,839	-				+0.8
4,502,847	+				-1.2
4,502,847	+				-1.2
4,502,847	+				-1.4
4,502,848	-				-1.4
4,502,848	-				+0.0
4,502,848	-				-0.2
4,502,849	+				+1.0
4,502,849	+				+0.2
4,502,849	+				-0.8
4,502,849	+				-0.5
4,502,849	+				-0.6
4,502,849	+				-0.6
4,502,849	+				+0.3
4,502,849	+				+0.4
4,502,849	+				-0.7
4,502,849	+				-0.3
4,502,850	-				-0.2
4,502,850	-				-2.1
4,502,850	-				-0.1
4,502,850	-				-2.1
4,502,850	-				-1.1
4,502,850	-				-0.2
4,502,850	-				-0.1
4,502,850	-				+1.4
4,502,850	-				-0.8
4,502,850	-				+1.2
4,502,850	-				-0.6
4,502,850	-				+0.3
4,502,850	-				+1.7
4,502,850	-				-0.2
4,502,850	-				+0.3
4,502,877	-				+0.4
4,502,904	+				+0.8
4,502,904	+				+0.5
4,502,905	-				-0.4
4,502,989	+				-0.1
4,503,012	+				-1.6
4,503,013	-				+1.4
4,503,041	+				-1.6
4,503,131	+				-0.9
4,503,131	+				+1.4
4,503,132	-				-0.7
4,503,132	-				-2.1
4,503,138	-				+0.4
4,503,290	+		HGI48_RS20165	0.21	-0.4
4,503,290	+		HGI48_RS20165	0.21	+0.6
4,503,290	+		HGI48_RS20165	0.21	-1.1
4,503,290	+		HGI48_RS20165	0.21	-0.2
4,503,290	+		HGI48_RS20165	0.21	+0.5
4,503,290	+		HGI48_RS20165	0.21	+0.4
4,503,291	-		HGI48_RS20165	0.21	+0.0
4,503,291	-		HGI48_RS20165	0.21	-0.5
4,503,291	-		HGI48_RS20165	0.21	-1.2
4,503,311	+		HGI48_RS20165	0.24	+0.5
4,503,312	-		HGI48_RS20165	0.24	+0.0
4,503,312	-		HGI48_RS20165	0.24	-0.5
4,503,449	+		HGI48_RS20165	0.42	-0.8
4,503,450	-		HGI48_RS20165	0.43	-0.6
4,503,671	+		HGI48_RS20165	0.72	-0.7
4,503,671	+		HGI48_RS20165	0.72	-1.0
4,503,672	-		HGI48_RS20165	0.73	+0.8
4,503,672	-		HGI48_RS20165	0.73	+1.4
4,503,800	-				-1.2
4,503,852	-				-0.2
4,503,934	+				-0.2
4,503,935	-				+1.5
4,504,037	+		HGI48_RS20170	0.12	-2.1
4,504,158	+		HGI48_RS20170	0.21	-0.7
4,504,159	-		HGI48_RS20170	0.22	-1.8
4,504,216	-		HGI48_RS20170	0.26	-0.4
4,504,234	+		HGI48_RS20170	0.27	+0.1
4,504,234	+		HGI48_RS20170	0.27	-2.1
4,504,234	+		HGI48_RS20170	0.27	-0.1
4,504,235	-		HGI48_RS20170	0.27	+0.3
4,504,235	-		HGI48_RS20170	0.27	-2.6
4,504,235	-		HGI48_RS20170	0.27	-1.8
4,504,258	+		HGI48_RS20170	0.29	+1.0
4,504,258	+		HGI48_RS20170	0.29	-0.5
4,504,258	+		HGI48_RS20170	0.29	-0.3
4,504,259	-		HGI48_RS20170	0.29	-0.5
4,504,259	-		HGI48_RS20170	0.29	-0.5
4,504,259	-				+1.8
4,504,259	-		HGI48_RS20170	0.29	-1.8
4,504,259	-		HGI48_RS20170	0.29	+1.2
4,504,313	+		HGI48_RS20170	0.33	+1.6
4,504,321	+				+1.3
4,504,321	+		HGI48_RS20170	0.34	+1.1
4,504,322	-		HGI48_RS20170	0.34	+0.5
4,504,337	+		HGI48_RS20170	0.35	+0.2
4,504,337	+		HGI48_RS20170	0.35	+1.4
4,504,338	-		HGI48_RS20170	0.35	-0.4
4,504,338	-		HGI48_RS20170	0.35	+1.3
4,504,354	-		HGI48_RS20170	0.36	-0.7
4,504,359	+		HGI48_RS20170	0.36	-0.6
4,504,359	+				+0.8
4,504,427	-		HGI48_RS20170	0.42	+0.8
4,504,427	-		HGI48_RS20170	0.42	+0.1
4,504,428	+		HGI48_RS20170	0.42	-1.0
4,504,438	+		HGI48_RS20170	0.42	-1.6
4,504,438	+		HGI48_RS20170	0.42	-1.0
4,504,438	+		HGI48_RS20170	0.42	+1.3
4,504,438	+		HGI48_RS20170	0.42	+0.8
4,504,458	+				+0.2
4,504,458	+		HGI48_RS20170	0.44	-0.0
4,504,595	+		HGI48_RS20170	0.54	+1.4
4,504,696	+		HGI48_RS20170	0.62	+1.0
4,504,697	-		HGI48_RS20170	0.62	+0.3
4,504,718	+		HGI48_RS20170	0.63	-0.7
4,504,726	+				+1.5
4,504,726	+		HGI48_RS20170	0.64	-0.1
4,504,727	-		HGI48_RS20170	0.64	-1.4
4,504,727	-		HGI48_RS20170	0.64	+0.5
4,504,780	+		HGI48_RS20170	0.68	+0.0
4,504,780	+		HGI48_RS20170	0.68	-2.4
4,504,780	+		HGI48_RS20170	0.68	-1.6
4,504,781	-		HGI48_RS20170	0.68	+0.1
4,504,781	-		HGI48_RS20170	0.68	+0.5
4,504,781	-		HGI48_RS20170	0.68	+0.8