Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19200

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,312,763	+				-0.2
4,312,764	-				-0.0
4,313,446	+				-0.9
4,313,446	+		HGI48_RS19200	0.21	-1.7
4,313,446	+		HGI48_RS19200	0.21	-2.0
4,313,446	+				+1.3
4,313,447	-		HGI48_RS19200	0.21	-1.9
4,313,447	-		HGI48_RS19200	0.21	-0.9
4,313,447	-		HGI48_RS19200	0.21	+0.3
4,313,479	-		HGI48_RS19200	0.27	-1.6
4,313,500	+		HGI48_RS19200	0.30	-1.3
4,313,540	+				+0.7
4,313,541	-		HGI48_RS19200	0.38	+0.5
4,313,580	+		HGI48_RS19200	0.45	+0.1
4,313,581	-		HGI48_RS19200	0.45	-1.6
4,313,581	-		HGI48_RS19200	0.45	-0.3
4,313,615	+		HGI48_RS19200	0.51	-2.3
4,313,615	+		HGI48_RS19200	0.51	+0.0
4,313,616	-		HGI48_RS19200	0.51	+0.2
4,313,636	+		HGI48_RS19200	0.55	+0.2
4,313,637	-		HGI48_RS19200	0.55	-0.3
4,313,637	-		HGI48_RS19200	0.55	-1.7
4,313,637	-		HGI48_RS19200	0.55	-1.9
4,313,743	+		HGI48_RS19200	0.74	-0.3
4,313,743	+		HGI48_RS19200	0.74	-0.4
4,313,743	+		HGI48_RS19200	0.74	+0.6
4,313,744	-		HGI48_RS19200	0.74	-1.9
4,313,744	-		HGI48_RS19200	0.74	-0.0
4,313,750	+		HGI48_RS19200	0.75	-0.0
4,313,762	+		HGI48_RS19200	0.77	-2.1
4,313,764	+		HGI48_RS19200	0.78	-0.9
4,313,765	-		HGI48_RS19200	0.78	-0.9
4,313,765	-		HGI48_RS19200	0.78	-0.3
4,313,870	+				+0.7
4,313,870	+				+0.7
4,313,870	+				-1.0
4,313,871	-				+0.5
4,313,871	-				+0.1
4,313,871	-				+0.7
4,313,871	-				+1.0
4,313,871	-				-2.1
4,313,871	-				-2.3
4,313,871	-				+0.6
4,313,875	-				-0.0
4,313,875	-				-1.5
4,313,875	-				-0.2
4,313,875	-				-1.3
4,313,893	+				-0.9
4,313,894	-				-2.1
4,313,894	-				+0.2
4,313,918	+				+0.4
4,313,918	+				-0.7
4,313,918	+				-1.9
4,313,919	-				+0.7
4,313,919	-				+0.1
4,313,941	+				-0.7
4,313,942	-				+0.3
4,313,960	+		HGI48_RS19205	0.11	-1.0
4,314,063	+		HGI48_RS19205	0.33	-1.1
4,314,063	+		HGI48_RS19205	0.33	+0.1
4,314,064	-		HGI48_RS19205	0.33	-2.2
4,314,064	-		HGI48_RS19205	0.33	+0.7
4,314,096	+		HGI48_RS19205	0.40	+1.0
4,314,096	+		HGI48_RS19205	0.40	-0.2
4,314,097	-		HGI48_RS19205	0.40	-0.3
4,314,097	-		HGI48_RS19205	0.40	-1.6
4,314,097	-		HGI48_RS19205	0.40	+1.3
4,314,162	+		HGI48_RS19205	0.54	-2.1
4,314,164	+		HGI48_RS19205	0.54	+0.4
4,314,164	+		HGI48_RS19205	0.54	+0.3
4,314,164	+		HGI48_RS19205	0.54	-1.9
4,314,164	+		HGI48_RS19205	0.54	-0.3
4,314,165	-		HGI48_RS19205	0.54	+0.1
4,314,165	-		HGI48_RS19205	0.54	-0.5
4,314,165	-		HGI48_RS19205	0.54	-0.2
4,314,165	-				-0.9
4,314,260	+		HGI48_RS19205	0.74	-0.0
4,314,260	+		HGI48_RS19205	0.74	-0.4
4,314,260	+		HGI48_RS19205	0.74	-0.2
4,314,260	+		HGI48_RS19205	0.74	+1.0
4,314,260	+		HGI48_RS19205	0.74	-0.8
4,314,260	+		HGI48_RS19205	0.74	-2.1
4,314,260	+		HGI48_RS19205	0.74	-1.1
4,314,260	+		HGI48_RS19205	0.74	-0.5
4,314,261	-		HGI48_RS19205	0.74	-0.6
4,314,261	-		HGI48_RS19205	0.74	+0.3
4,314,261	-		HGI48_RS19205	0.74	-1.3
4,314,261	-		HGI48_RS19205	0.74	-0.9
4,314,264	+		HGI48_RS19205	0.75	+1.0
4,314,264	+		HGI48_RS19205	0.75	-0.5
4,314,264	+				+0.1
4,314,265	-		HGI48_RS19205	0.75	+0.2
4,314,265	-		HGI48_RS19205	0.75	+1.6
4,314,309	+		HGI48_RS19205	0.85	-1.9
4,314,309	+		HGI48_RS19205	0.85	-0.3
4,314,309	+		HGI48_RS19205	0.85	-0.4
4,314,309	+		HGI48_RS19205	0.85	+0.4
4,314,310	-		HGI48_RS19205	0.85	-0.3
4,314,310	-		HGI48_RS19205	0.85	+0.2
4,314,310	-		HGI48_RS19205	0.85	+0.1
4,314,310	-		HGI48_RS19205	0.85	+0.5
4,314,310	-		HGI48_RS19205	0.85	+1.3
4,314,347	+				+1.1
4,314,347	+				-0.7
4,314,347	+				+0.7
4,314,348	-				-0.4
4,314,348	-				+0.5
4,314,348	-				+0.7
4,314,348	-				-0.1
4,314,348	-				+0.6
4,314,348	-				+0.3
4,314,348	-				+1.4
4,314,362	+				+0.5
4,314,362	+				-0.7
4,314,362	+				+1.3
4,314,363	-				+1.3
4,314,363	-				+0.1
4,314,363	-				-0.3
4,314,363	-				-0.9
4,314,370	+				-2.3
4,314,370	+				+1.1
4,314,370	+				-0.4
4,314,370	+				+1.7
4,314,370	+				-0.7
4,314,370	+				+0.7
4,314,370	+				-1.6
4,314,370	+				+0.4
4,314,370	+				-1.1
4,314,371	-				+0.7
4,314,371	-				-1.7
4,314,395	+				+0.3
4,314,395	+				+1.0
4,314,396	-				+1.0
4,314,397	+				+0.3
4,314,397	+				+0.0
4,314,398	-				+0.6
4,314,406	-				+0.6
4,314,417	-				-0.3
4,314,437	+				-1.9
4,314,452	+				-0.9
4,314,457	+				+0.0
4,314,457	+				-2.3
4,314,457	+				+0.7
4,314,457	+				-2.3
4,314,457	+				+1.3
4,314,458	-				+1.5
4,314,458	-				+1.9
4,314,458	-				+0.0
4,314,514	+				+1.7
4,314,514	+		HGI48_RS19210	0.14	+0.2
4,314,514	+		HGI48_RS19210	0.14	-2.3
4,314,527	+		HGI48_RS19210	0.15	-1.3
4,314,528	-		HGI48_RS19210	0.15	-0.1
4,314,528	-		HGI48_RS19210	0.15	+0.6
4,314,583	+		HGI48_RS19210	0.20	+0.4
4,314,584	-		HGI48_RS19210	0.20	+1.5
4,314,690	-		HGI48_RS19210	0.30	+0.4
4,314,703	+		HGI48_RS19210	0.31	+0.3
4,314,747	-		HGI48_RS19210	0.35	-0.5
4,314,747	-		HGI48_RS19210	0.35	-1.3
4,314,772	-				+1.7
4,314,833	+		HGI48_RS19210	0.42	-1.3
4,314,833	+		HGI48_RS19210	0.42	-1.0
4,314,833	+		HGI48_RS19210	0.42	-0.3
4,314,834	-		HGI48_RS19210	0.42	-0.1
4,314,834	-		HGI48_RS19210	0.42	+1.4
4,314,834	-		HGI48_RS19210	0.42	-0.1
4,314,886	+		HGI48_RS19210	0.47	-0.2