Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18970

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,259,922	-				+2.1
4,259,922	-		HGI48_RS18965	0.64	+1.1
4,259,922	-		HGI48_RS18965	0.64	-2.1
4,259,922	-		HGI48_RS18965	0.64	+0.2
4,259,925	+		HGI48_RS18965	0.65	+0.1
4,259,926	-		HGI48_RS18965	0.65	-0.1
4,259,926	-		HGI48_RS18965	0.65	+0.2
4,260,102	+		HGI48_RS18965	0.87	+0.1
4,260,103	-		HGI48_RS18965	0.87	-0.3
4,260,140	+				-1.0
4,260,140	+				-0.5
4,260,141	-				+0.5
4,260,290	+				-0.3
4,260,295	-				-0.3
4,260,295	-				+0.2
4,260,306	+				-1.6
4,260,307	-				-1.0
4,260,307	-				+0.2
4,260,307	-				-0.3
4,260,307	-				-0.1
4,260,338	+				-0.3
4,260,338	+				-0.5
4,260,338	+				-1.8
4,260,338	+				-0.6
4,260,339	-				+0.4
4,260,339	-				+1.4
4,260,339	-				-2.3
4,260,339	-				+1.1
4,260,509	-				-0.1
4,260,519	-				+0.1
4,260,519	-				+0.6
4,260,529	+				-2.6
4,260,530	-				+0.3
4,260,549	-				-2.1
4,260,581	-				+1.8
4,260,613	+				-0.3
4,260,671	+				+0.7
4,260,688	+				-1.6
4,260,709	+				-0.1
4,260,803	+				-0.5
4,260,812	-				-2.3
4,260,902	+				-0.3
4,260,902	+				+0.2
4,260,903	-				-0.0
4,261,097	+		HGI48_RS18970	0.32	-2.3
4,261,097	+		HGI48_RS18970	0.32	-1.3
4,261,097	+		HGI48_RS18970	0.32	-0.2
4,261,097	+		HGI48_RS18970	0.32	+0.3
4,261,098	-		HGI48_RS18970	0.32	-0.7
4,261,139	+		HGI48_RS18970	0.39	-0.2
4,261,162	+		HGI48_RS18970	0.43	+0.9
4,261,168	+		HGI48_RS18970	0.44	-1.6
4,261,168	+		HGI48_RS18970	0.44	-0.3
4,261,168	+		HGI48_RS18970	0.44	+1.2
4,261,168	+		HGI48_RS18970	0.44	-1.5
4,261,168	+		HGI48_RS18970	0.44	-1.3
4,261,239	+		HGI48_RS18970	0.56	-0.3
4,261,250	+		HGI48_RS18970	0.58	-2.6
4,261,287	+		HGI48_RS18970	0.65	+0.7
4,261,320	+		HGI48_RS18970	0.71	+0.2
4,261,372	-		HGI48_RS18970	0.80	+1.0
4,261,376	+		HGI48_RS18970	0.80	-0.7
4,261,426	+		HGI48_RS18970	0.89	+0.8
4,261,426	+		HGI48_RS18970	0.89	+0.2
4,261,426	+		HGI48_RS18970	0.89	-0.3
4,261,427	-		HGI48_RS18970	0.89	-1.9
4,261,427	-				-0.9
4,261,428	+		HGI48_RS18970	0.89	-2.3
4,261,428	+		HGI48_RS18970	0.89	-0.6
4,261,523	+				-0.3
4,261,524	-				-0.7
4,261,524	-				+0.3
4,261,524	-				-0.5
4,261,524	-				+0.7
4,261,524	-				+0.1
4,261,539	+				-0.0
4,261,539	+				-0.1
4,261,540	-				-1.3
4,261,544	+				-0.2
4,261,569	+				-0.3
4,261,570	-				+0.1
4,261,581	+				-0.6
4,261,585	-				+0.7
4,261,643	+		HGI48_RS18975	0.14	+1.5
4,261,643	+		HGI48_RS18975	0.14	-2.5
4,261,644	-		HGI48_RS18975	0.14	+1.0
4,261,648	-		HGI48_RS18975	0.15	-0.3
4,261,656	+		HGI48_RS18975	0.16	+0.2
4,261,657	-		HGI48_RS18975	0.16	-0.7
4,261,657	-				-0.3
4,261,709	+		HGI48_RS18975	0.23	-0.1
4,261,709	+		HGI48_RS18975	0.23	-0.4
4,261,709	+		HGI48_RS18975	0.23	-0.7
4,261,709	+				-0.9
4,261,709	+		HGI48_RS18975	0.23	+1.6
4,261,709	+				+0.7
4,261,709	+				+0.7
4,261,709	+		HGI48_RS18975	0.23	-1.9
4,261,710	-		HGI48_RS18975	0.23	-0.9
4,261,717	+		HGI48_RS18975	0.24	-2.5
4,261,718	-				+0.7
4,261,718	-		HGI48_RS18975	0.25	+0.2
4,261,761	+				+3.3
4,261,761	+				+1.3
4,261,778	-		HGI48_RS18975	0.33	-1.7
4,261,801	-		HGI48_RS18975	0.36	-0.1
4,261,813	+		HGI48_RS18975	0.38	-0.6
4,261,813	+		HGI48_RS18975	0.38	-0.9
4,261,813	+		HGI48_RS18975	0.38	+0.6
4,261,814	-		HGI48_RS18975	0.38	-0.4
4,261,816	+		HGI48_RS18975	0.38	+0.2
4,261,816	+		HGI48_RS18975	0.38	+0.7
4,261,816	+		HGI48_RS18975	0.38	+1.0
4,261,816	+		HGI48_RS18975	0.38	-0.9
4,261,816	+				-0.9
4,261,817	-		HGI48_RS18975	0.38	+0.7
4,261,817	-		HGI48_RS18975	0.38	-0.7
4,261,817	-				+0.7
4,261,817	-		HGI48_RS18975	0.38	-0.3
4,261,817	-		HGI48_RS18975	0.38	-0.6
4,261,817	-		HGI48_RS18975	0.38	+0.7
4,261,957	+		HGI48_RS18975	0.58	-1.0
4,261,958	-		HGI48_RS18975	0.58	-2.7
4,261,958	-		HGI48_RS18975	0.58	+0.9
4,261,958	-		HGI48_RS18975	0.58	+1.3
4,261,978	+		HGI48_RS18975	0.61	-0.6
4,261,979	-		HGI48_RS18975	0.61	-1.3
4,261,980	+		HGI48_RS18975	0.61	+0.2
4,261,980	+		HGI48_RS18975	0.61	-2.5
4,261,980	+		HGI48_RS18975	0.61	-2.6
4,261,980	+		HGI48_RS18975	0.61	-0.1
4,261,980	+		HGI48_RS18975	0.61	-0.5
4,261,980	+		HGI48_RS18975	0.61	+1.0
4,261,980	+		HGI48_RS18975	0.61	+0.9
4,261,980	+		HGI48_RS18975	0.61	+0.2
4,261,981	-		HGI48_RS18975	0.61	-0.9
4,261,981	-		HGI48_RS18975	0.61	+1.1
4,262,006	+		HGI48_RS18975	0.65	+0.7
4,262,007	-		HGI48_RS18975	0.65	-1.3
4,262,007	-		HGI48_RS18975	0.65	+0.4
4,262,011	+		HGI48_RS18975	0.66	-0.3
4,262,011	+		HGI48_RS18975	0.66	-1.6
4,262,011	+				+0.7
4,262,011	+		HGI48_RS18975	0.66	-1.3
4,262,011	+		HGI48_RS18975	0.66	-0.6
4,262,011	+		HGI48_RS18975	0.66	-0.2
4,262,011	+		HGI48_RS18975	0.66	+0.4
4,262,011	+				-0.3
4,262,011	+		HGI48_RS18975	0.66	-0.1
4,262,012	-		HGI48_RS18975	0.66	+0.7
4,262,012	-		HGI48_RS18975	0.66	-1.6
4,262,012	-		HGI48_RS18975	0.66	+0.4
4,262,012	-		HGI48_RS18975	0.66	+1.0
4,262,012	-		HGI48_RS18975	0.66	-0.6
4,262,012	-				-0.3
4,262,012	-		HGI48_RS18975	0.66	-1.3
4,262,012	-		HGI48_RS18975	0.66	+0.7
4,262,012	-		HGI48_RS18975	0.66	+2.0
4,262,012	-		HGI48_RS18975	0.66	-0.7
4,262,012	-		HGI48_RS18975	0.66	-1.6
4,262,012	-				+0.7
4,262,013	+		HGI48_RS18975	0.66	+0.6
4,262,013	+		HGI48_RS18975	0.66	+0.5
4,262,013	+		HGI48_RS18975	0.66	+0.2
4,262,013	+		HGI48_RS18975	0.66	+0.4
4,262,013	+		HGI48_RS18975	0.66	+1.3
4,262,013	+		HGI48_RS18975	0.66	-1.9
4,262,013	+		HGI48_RS18975	0.66	-2.9
4,262,013	+		HGI48_RS18975	0.66	+0.1
4,262,014	-		HGI48_RS18975	0.66	+0.7
4,262,014	-				-0.9
4,262,014	-		HGI48_RS18975	0.66	+0.0
4,262,014	-		HGI48_RS18975	0.66	-0.6
4,262,014	-		HGI48_RS18975	0.66	-1.5
4,262,015	+		HGI48_RS18975	0.66	-2.2
4,262,015	+		HGI48_RS18975	0.66	+1.3
4,262,015	+		HGI48_RS18975	0.66	+0.2
4,262,015	+		HGI48_RS18975	0.66	+0.3
4,262,015	+		HGI48_RS18975	0.66	+1.0
4,262,015	+		HGI48_RS18975	0.66	+0.4
4,262,015	+		HGI48_RS18975	0.66	+0.2
4,262,016	-		HGI48_RS18975	0.66	+0.5
4,262,016	-				+0.1
4,262,016	-		HGI48_RS18975	0.66	-1.1
4,262,016	-		HGI48_RS18975	0.66	+0.7
4,262,016	-		HGI48_RS18975	0.66	-0.3
4,262,016	-		HGI48_RS18975	0.66	+0.6
4,262,043	+				-0.9
4,262,044	-		HGI48_RS18975	0.70	+0.7
4,262,064	+		HGI48_RS18975	0.73	+1.1
4,262,064	+		HGI48_RS18975	0.73	-1.2
4,262,064	+				+0.7
4,262,064	+		HGI48_RS18975	0.73	-1.3
4,262,084	-		HGI48_RS18975	0.76	-1.6
4,262,102	+				-0.9
4,262,102	+		HGI48_RS18975	0.78	+0.0
4,262,102	+		HGI48_RS18975	0.78	-0.4
4,262,102	+		HGI48_RS18975	0.78	+0.2
4,262,102	+		HGI48_RS18975	0.78	-0.5
4,262,102	+		HGI48_RS18975	0.78	-0.7
4,262,102	+		HGI48_RS18975	0.78	+0.9
4,262,103	-		HGI48_RS18975	0.78	-1.3
4,262,103	-		HGI48_RS18975	0.78	-0.9
4,262,103	-		HGI48_RS18975	0.78	-0.5
4,262,103	-		HGI48_RS18975	0.78	-0.3
4,262,157	+		HGI48_RS18975	0.86	+0.3
4,262,157	+		HGI48_RS18975	0.86	-0.1
4,262,257	-				+0.4
4,262,275	+				+1.7
4,262,275	+				-0.4
4,262,275	+				-2.1
4,262,276	-				-0.8
4,262,276	-				-0.0
4,262,276	-				-0.6
4,262,433	+		HGI48_RS18980	0.20	+0.2
4,262,433	+		HGI48_RS18980	0.20	+1.6
4,262,433	+				+1.1
4,262,485	+		HGI48_RS18980	0.26	+1.5
4,262,485	+		HGI48_RS18980	0.26	+0.7
4,262,485	+		HGI48_RS18980	0.26	-0.3
4,262,485	+		HGI48_RS18980	0.26	+0.7
4,262,485	+		HGI48_RS18980	0.26	-0.1
4,262,485	+		HGI48_RS18980	0.26	-0.1
4,262,486	-		HGI48_RS18980	0.26	-1.6
4,262,486	-		HGI48_RS18980	0.26	-0.3
4,262,486	-		HGI48_RS18980	0.26	+0.3
4,262,486	-		HGI48_RS18980	0.26	-0.3
4,262,486	-		HGI48_RS18980	0.26	-0.2
4,262,486	-		HGI48_RS18980	0.26	-0.5
4,262,486	-		HGI48_RS18980	0.26	+0.1
4,262,486	-		HGI48_RS18980	0.26	+0.1
4,262,486	-		HGI48_RS18980	0.26	-1.9
4,262,487	+		HGI48_RS18980	0.26	-0.3
4,262,487	+		HGI48_RS18980	0.26	-0.3
4,262,487	+		HGI48_RS18980	0.26	-0.3
4,262,487	+		HGI48_RS18980	0.26	+0.5
4,262,487	+				+1.9