Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18755

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18750 and HGI48_RS18755 are separated by 345 nucleotidesHGI48_RS18755 and HGI48_RS18760 overlap by 4 nucleotides HGI48_RS18750: HGI48_RS18750 - p-aminobenzoyl-glutamate transporter, at 4,203,535 to 4,205,058 _RS18750 HGI48_RS18755: HGI48_RS18755 - amidohydrolase, at 4,205,404 to 4,206,855 _RS18755 HGI48_RS18760: HGI48_RS18760 - M20 family metallo-hydrolase, at 4,206,852 to 4,208,156 _RS18760 Position (kb) 4205 4206 4207Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4204.422 kb on + strand, within HGI48_RS18750at 4204.422 kb on + strand, within HGI48_RS18750at 4204.423 kb on - strandat 4204.423 kb on - strand, within HGI48_RS18750at 4204.456 kb on - strandat 4204.524 kb on + strand, within HGI48_RS18750at 4204.674 kb on + strandat 4204.674 kb on + strand, within HGI48_RS18750at 4204.674 kb on + strandat 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strand, within HGI48_RS18750at 4204.675 kb on - strandat 4204.675 kb on - strand, within HGI48_RS18750at 4204.676 kb on + strand, within HGI48_RS18750at 4204.676 kb on + strand, within HGI48_RS18750at 4204.676 kb on + strand, within HGI48_RS18750at 4204.676 kb on + strand, within HGI48_RS18750at 4204.677 kb on - strandat 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strandat 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.677 kb on - strand, within HGI48_RS18750at 4204.716 kb on - strand, within HGI48_RS18750at 4204.716 kb on - strand, within HGI48_RS18750at 4204.956 kb on - strandat 4205.154 kb on + strandat 4205.155 kb on - strandat 4205.283 kb on + strandat 4205.284 kb on - strandat 4205.302 kb on + strandat 4205.302 kb on + strandat 4205.303 kb on - strandat 4205.325 kb on - strandat 4205.389 kb on + strandat 4205.389 kb on + strandat 4205.414 kb on - strandat 4205.613 kb on + strand, within HGI48_RS18755at 4205.613 kb on + strand, within HGI48_RS18755at 4205.636 kb on + strand, within HGI48_RS18755at 4205.636 kb on + strand, within HGI48_RS18755at 4205.726 kb on + strand, within HGI48_RS18755at 4205.726 kb on + strand, within HGI48_RS18755at 4205.726 kb on + strand, within HGI48_RS18755at 4205.727 kb on - strand, within HGI48_RS18755at 4205.888 kb on + strand, within HGI48_RS18755at 4205.921 kb on + strand, within HGI48_RS18755at 4205.921 kb on + strand, within HGI48_RS18755at 4205.922 kb on - strand, within HGI48_RS18755at 4205.922 kb on - strand, within HGI48_RS18755at 4205.922 kb on - strand, within HGI48_RS18755at 4205.922 kb on - strandat 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strandat 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strand, within HGI48_RS18755at 4205.954 kb on + strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4205.955 kb on - strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.041 kb on + strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.042 kb on - strand, within HGI48_RS18755at 4206.083 kb on + strand, within HGI48_RS18755at 4206.083 kb on + strand, within HGI48_RS18755at 4206.083 kb on + strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.084 kb on - strand, within HGI48_RS18755at 4206.147 kb on - strand, within HGI48_RS18755at 4206.147 kb on - strandat 4206.431 kb on + strand, within HGI48_RS18755at 4206.431 kb on + strand, within HGI48_RS18755at 4206.431 kb on + strand, within HGI48_RS18755at 4206.432 kb on - strand, within HGI48_RS18755at 4206.740 kb on + strandat 4206.741 kb on - strandat 4206.777 kb on + strandat 4206.777 kb on + strandat 4206.777 kb on + strandat 4206.778 kb on - strandat 4206.778 kb on - strandat 4206.778 kb on - strandat 4207.031 kb on - strand, within HGI48_RS18760at 4207.031 kb on - strand, within HGI48_RS18760at 4207.031 kb on - strand, within HGI48_RS18760at 4207.031 kb on - strand, within HGI48_RS18760at 4207.031 kb on - strand, within HGI48_RS18760at 4207.031 kb on - strand, within HGI48_RS18760at 4207.123 kb on - strand, within HGI48_RS18760at 4207.231 kb on + strand, within HGI48_RS18760at 4207.231 kb on + strand, within HGI48_RS18760at 4207.231 kb on + strand, within HGI48_RS18760at 4207.232 kb on - strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.235 kb on + strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.236 kb on - strand, within HGI48_RS18760at 4207.377 kb on + strand, within HGI48_RS18760at 4207.377 kb on + strand, within HGI48_RS18760at 4207.377 kb on + strand, within HGI48_RS18760at 4207.378 kb on - strand, within HGI48_RS18760at 4207.378 kb on - strand, within HGI48_RS18760at 4207.558 kb on + strand, within HGI48_RS18760at 4207.559 kb on - strandat 4207.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,204,422 + HGI48_RS18750 0.58 -2.3
4,204,422 + HGI48_RS18750 0.58 -0.1
4,204,423 - +0.7
4,204,423 - HGI48_RS18750 0.58 -0.5
4,204,456 - -0.3
4,204,524 + HGI48_RS18750 0.65 +0.7
4,204,674 + -0.9
4,204,674 + HGI48_RS18750 0.75 +0.0
4,204,674 + +1.1
4,204,675 - HGI48_RS18750 0.75 +1.5
4,204,675 - HGI48_RS18750 0.75 +0.4
4,204,675 - HGI48_RS18750 0.75 -1.6
4,204,675 - HGI48_RS18750 0.75 +1.0
4,204,675 - HGI48_RS18750 0.75 +0.1
4,204,675 - HGI48_RS18750 0.75 +0.7
4,204,675 - HGI48_RS18750 0.75 +0.7
4,204,675 - HGI48_RS18750 0.75 +0.5
4,204,675 - +3.0
4,204,675 - HGI48_RS18750 0.75 -0.2
4,204,676 + HGI48_RS18750 0.75 -0.8
4,204,676 + HGI48_RS18750 0.75 +0.3
4,204,676 + HGI48_RS18750 0.75 +0.3
4,204,676 + HGI48_RS18750 0.75 +0.3
4,204,677 - +1.7
4,204,677 - HGI48_RS18750 0.75 -2.5
4,204,677 - HGI48_RS18750 0.75 +0.5
4,204,677 - HGI48_RS18750 0.75 -0.3
4,204,677 - HGI48_RS18750 0.75 -1.6
4,204,677 - +4.0
4,204,677 - HGI48_RS18750 0.75 -0.9
4,204,677 - HGI48_RS18750 0.75 +1.0
4,204,677 - HGI48_RS18750 0.75 -0.2
4,204,677 - HGI48_RS18750 0.75 -0.5
4,204,716 - HGI48_RS18750 0.77 -1.6
4,204,716 - HGI48_RS18750 0.77 +0.2
4,204,956 - +0.3
4,205,154 + -0.3
4,205,155 - +0.7
4,205,283 + +0.3
4,205,284 - +2.1
4,205,302 + +0.4
4,205,302 + +0.3
4,205,303 - -1.5
4,205,325 - +0.1
4,205,389 + +0.4
4,205,389 + +1.1
4,205,414 - -0.2
4,205,613 + HGI48_RS18755 0.14 -0.4
4,205,613 + HGI48_RS18755 0.14 +0.8
4,205,636 + HGI48_RS18755 0.16 -1.0
4,205,636 + HGI48_RS18755 0.16 -0.4
4,205,726 + HGI48_RS18755 0.22 +0.3
4,205,726 + HGI48_RS18755 0.22 -0.2
4,205,726 + HGI48_RS18755 0.22 -0.9
4,205,727 - HGI48_RS18755 0.22 -1.5
4,205,888 + HGI48_RS18755 0.33 -0.3
4,205,921 + HGI48_RS18755 0.36 -1.3
4,205,921 + HGI48_RS18755 0.36 -0.5
4,205,922 - HGI48_RS18755 0.36 -1.8
4,205,922 - HGI48_RS18755 0.36 +0.7
4,205,922 - HGI48_RS18755 0.36 -1.0
4,205,922 - -0.9
4,205,954 + HGI48_RS18755 0.38 +1.4
4,205,954 + -0.3
4,205,954 + HGI48_RS18755 0.38 -0.6
4,205,954 + HGI48_RS18755 0.38 +0.6
4,205,954 + HGI48_RS18755 0.38 -1.3
4,205,954 + HGI48_RS18755 0.38 -1.4
4,205,954 + HGI48_RS18755 0.38 +1.0
4,205,954 + HGI48_RS18755 0.38 +0.5
4,205,955 - HGI48_RS18755 0.38 +0.5
4,205,955 - HGI48_RS18755 0.38 -1.3
4,205,955 - HGI48_RS18755 0.38 +0.0
4,205,955 - HGI48_RS18755 0.38 +1.0
4,205,955 - HGI48_RS18755 0.38 +0.4
4,205,955 - HGI48_RS18755 0.38 -1.1
4,205,955 - HGI48_RS18755 0.38 +1.2
4,206,041 + HGI48_RS18755 0.44 +0.2
4,206,041 + HGI48_RS18755 0.44 -0.9
4,206,041 + HGI48_RS18755 0.44 -1.9
4,206,041 + HGI48_RS18755 0.44 -1.8
4,206,041 + HGI48_RS18755 0.44 +0.3
4,206,041 + HGI48_RS18755 0.44 -1.9
4,206,041 + HGI48_RS18755 0.44 +1.2
4,206,042 - HGI48_RS18755 0.44 -0.9
4,206,042 - HGI48_RS18755 0.44 -1.6
4,206,042 - HGI48_RS18755 0.44 +0.7
4,206,042 - HGI48_RS18755 0.44 +0.5
4,206,042 - HGI48_RS18755 0.44 -0.5
4,206,042 - HGI48_RS18755 0.44 +2.3
4,206,083 + HGI48_RS18755 0.47 +0.0
4,206,083 + HGI48_RS18755 0.47 -2.1
4,206,083 + HGI48_RS18755 0.47 -1.9
4,206,084 - HGI48_RS18755 0.47 -1.6
4,206,084 - HGI48_RS18755 0.47 -0.6
4,206,084 - HGI48_RS18755 0.47 -0.6
4,206,084 - HGI48_RS18755 0.47 +0.7
4,206,084 - HGI48_RS18755 0.47 -0.0
4,206,084 - HGI48_RS18755 0.47 -0.6
4,206,084 - HGI48_RS18755 0.47 -0.8
4,206,084 - HGI48_RS18755 0.47 -0.3
4,206,147 - HGI48_RS18755 0.51 -0.5
4,206,147 - +1.1
4,206,431 + HGI48_RS18755 0.71 -1.6
4,206,431 + HGI48_RS18755 0.71 +1.8
4,206,431 + HGI48_RS18755 0.71 +0.2
4,206,432 - HGI48_RS18755 0.71 -0.4
4,206,740 + +1.6
4,206,741 - +0.0
4,206,777 + -0.6
4,206,777 + -0.6
4,206,777 + -0.6
4,206,778 - -0.9
4,206,778 - -1.1
4,206,778 - +0.0
4,207,031 - HGI48_RS18760 0.14 +0.9
4,207,031 - HGI48_RS18760 0.14 +0.1
4,207,031 - HGI48_RS18760 0.14 +0.8
4,207,031 - HGI48_RS18760 0.14 +0.3
4,207,031 - HGI48_RS18760 0.14 -2.5
4,207,031 - HGI48_RS18760 0.14 -0.1
4,207,123 - HGI48_RS18760 0.21 -0.3
4,207,231 + HGI48_RS18760 0.29 +0.5
4,207,231 + HGI48_RS18760 0.29 -0.3
4,207,231 + HGI48_RS18760 0.29 +1.4
4,207,232 - HGI48_RS18760 0.29 +0.8
4,207,235 + HGI48_RS18760 0.29 -0.7
4,207,235 + HGI48_RS18760 0.29 -1.9
4,207,235 + HGI48_RS18760 0.29 -0.5
4,207,235 + HGI48_RS18760 0.29 -0.3
4,207,235 + HGI48_RS18760 0.29 -2.1
4,207,235 + HGI48_RS18760 0.29 -0.5
4,207,236 - HGI48_RS18760 0.29 -1.1
4,207,236 - HGI48_RS18760 0.29 -0.1
4,207,236 - HGI48_RS18760 0.29 +0.2
4,207,236 - HGI48_RS18760 0.29 -1.3
4,207,236 - HGI48_RS18760 0.29 -0.2
4,207,236 - HGI48_RS18760 0.29 +2.1
4,207,236 - HGI48_RS18760 0.29 -0.5
4,207,236 - HGI48_RS18760 0.29 -0.0
4,207,377 + HGI48_RS18760 0.40 -1.3
4,207,377 + HGI48_RS18760 0.40 -0.1
4,207,377 + HGI48_RS18760 0.40 -1.3
4,207,378 - HGI48_RS18760 0.40 +1.4
4,207,378 - HGI48_RS18760 0.40 -0.3
4,207,558 + HGI48_RS18760 0.54 -0.3
4,207,559 - +0.7
4,207,799 + +1.4

Or see this region's nucleotide sequence