Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18135 and HGI48_RS18140 are separated by 6 nucleotides HGI48_RS18140 and HGI48_RS18145 are separated by 2 nucleotides HGI48_RS18145 and HGI48_RS18150 overlap by 4 nucleotides HGI48_RS18150 and HGI48_RS18155 overlap by 4 nucleotides
HGI48_RS18135: HGI48_RS18135 - N-acetylmuramidase family protein, at 4,068,675 to 4,069,526
_RS18135
HGI48_RS18140: HGI48_RS18140 - hypothetical protein, at 4,069,533 to 4,070,099
_RS18140
HGI48_RS18145: HGI48_RS18145 - hypothetical protein, at 4,070,102 to 4,070,665
_RS18145
HGI48_RS18150: HGI48_RS18150 - hypothetical protein, at 4,070,662 to 4,071,228
_RS18150
HGI48_RS18155: HGI48_RS18155 - hypothetical protein, at 4,071,225 to 4,071,791
_RS18155
Position (kb) 4070
4071 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4069.137 kb on - strand, within HGI48_RS18135 at 4069.141 kb on - strand, within HGI48_RS18135 at 4069.178 kb on + strand, within HGI48_RS18135 at 4069.178 kb on + strand, within HGI48_RS18135 at 4069.179 kb on - strand at 4069.185 kb on + strand, within HGI48_RS18135 at 4069.296 kb on + strand, within HGI48_RS18135 at 4069.296 kb on + strand, within HGI48_RS18135 at 4069.297 kb on - strand, within HGI48_RS18135 at 4069.299 kb on - strand, within HGI48_RS18135 at 4069.299 kb on - strand, within HGI48_RS18135 at 4069.349 kb on + strand, within HGI48_RS18135 at 4069.349 kb on + strand, within HGI48_RS18135 at 4069.350 kb on - strand at 4069.376 kb on + strand, within HGI48_RS18135 at 4069.402 kb on + strand, within HGI48_RS18135 at 4069.421 kb on + strand, within HGI48_RS18135 at 4069.449 kb on + strand at 4069.450 kb on - strand at 4069.450 kb on - strand at 4069.452 kb on - strand at 4069.452 kb on - strand at 4069.452 kb on - strand at 4069.452 kb on - strand at 4069.479 kb on + strand at 4069.518 kb on - strand at 4069.530 kb on + strand at 4069.533 kb on - strand at 4069.643 kb on - strand, within HGI48_RS18140 at 4070.056 kb on + strand at 4070.077 kb on + strand at 4070.151 kb on - strand at 4070.427 kb on + strand, within HGI48_RS18145 at 4070.451 kb on + strand at 4070.472 kb on - strand, within HGI48_RS18145 at 4070.488 kb on + strand, within HGI48_RS18145 at 4070.722 kb on - strand, within HGI48_RS18150 at 4070.808 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.861 kb on + strand, within HGI48_RS18150 at 4071.112 kb on - strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.332 kb on - strand, within HGI48_RS18155 at 4071.412 kb on + strand, within HGI48_RS18155 at 4071.413 kb on - strand, within HGI48_RS18155 at 4071.416 kb on + strand, within HGI48_RS18155 at 4071.581 kb on + strand, within HGI48_RS18155 at 4071.612 kb on - strand, within HGI48_RS18155
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,069,137 - HGI48_RS18135 0.54 +0.1 4,069,141 - HGI48_RS18135 0.55 +0.8 4,069,178 + HGI48_RS18135 0.59 +0.1 4,069,178 + HGI48_RS18135 0.59 -0.2 4,069,179 - -0.3 4,069,185 + HGI48_RS18135 0.60 -1.6 4,069,296 + HGI48_RS18135 0.73 -0.0 4,069,296 + HGI48_RS18135 0.73 -2.8 4,069,297 - HGI48_RS18135 0.73 -0.5 4,069,299 - HGI48_RS18135 0.73 -0.8 4,069,299 - HGI48_RS18135 0.73 -0.9 4,069,349 + HGI48_RS18135 0.79 -1.9 4,069,349 + HGI48_RS18135 0.79 +0.5 4,069,350 - -0.9 4,069,376 + HGI48_RS18135 0.82 +1.3 4,069,402 + HGI48_RS18135 0.85 -0.3 4,069,421 + HGI48_RS18135 0.88 -0.2 4,069,449 + -0.7 4,069,450 - -0.0 4,069,450 - -0.9 4,069,452 - -1.4 4,069,452 - -0.5 4,069,452 - -0.3 4,069,452 - -0.8 4,069,479 + -0.0 4,069,518 - +0.4 4,069,530 + +0.4 4,069,533 - -0.3 4,069,643 - HGI48_RS18140 0.19 -0.0 4,070,056 + -0.3 4,070,077 + +0.0 4,070,151 - -0.9 4,070,427 + HGI48_RS18145 0.58 -2.4 4,070,451 + -0.9 4,070,472 - HGI48_RS18145 0.66 +0.8 4,070,488 + HGI48_RS18145 0.68 +0.3 4,070,722 - HGI48_RS18150 0.11 -1.0 4,070,808 + HGI48_RS18150 0.26 -1.3 4,070,844 + HGI48_RS18150 0.32 -1.6 4,070,844 + HGI48_RS18150 0.32 -0.1 4,070,861 + HGI48_RS18150 0.35 -0.6 4,071,112 - HGI48_RS18150 0.79 +0.1 4,071,120 + HGI48_RS18150 0.81 +1.0 4,071,120 + HGI48_RS18150 0.81 -1.3 4,071,332 - HGI48_RS18155 0.19 +1.3 4,071,412 + HGI48_RS18155 0.33 -0.4 4,071,413 - HGI48_RS18155 0.33 -0.2 4,071,416 + HGI48_RS18155 0.34 -1.2 4,071,581 + HGI48_RS18155 0.63 +0.6 4,071,612 - HGI48_RS18155 0.68 +0.4
Or see this region's nucleotide sequence