Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17890

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,014,562	-				-1.0
4,014,562	-				+0.5
4,014,562	-				+0.4
4,014,562	-				-1.3
4,014,601	-				-0.7
4,014,601	-				+0.4
4,014,601	-				+1.9
4,014,645	+		HGI48_RS17885	0.15	-0.1
4,014,645	+		HGI48_RS17885	0.15	-1.3
4,014,646	-		HGI48_RS17885	0.15	+0.3
4,014,684	+		HGI48_RS17885	0.19	-1.6
4,014,694	-		HGI48_RS17885	0.20	+0.3
4,014,729	+		HGI48_RS17885	0.24	-0.3
4,014,729	+		HGI48_RS17885	0.24	-0.9
4,014,729	+		HGI48_RS17885	0.24	+0.5
4,014,730	-		HGI48_RS17885	0.24	+0.4
4,014,730	-		HGI48_RS17885	0.24	+0.2
4,014,730	-		HGI48_RS17885	0.24	-0.4
4,014,730	-		HGI48_RS17885	0.24	-0.3
4,014,735	+		HGI48_RS17885	0.25	+0.7
4,014,735	+		HGI48_RS17885	0.25	-1.9
4,014,735	+		HGI48_RS17885	0.25	+0.4
4,014,735	+				+0.7
4,014,735	+		HGI48_RS17885	0.25	-0.9
4,014,736	-		HGI48_RS17885	0.25	-1.1
4,014,736	-		HGI48_RS17885	0.25	-0.9
4,014,746	-		HGI48_RS17885	0.26	-0.0
4,014,842	+		HGI48_RS17885	0.37	-2.3
4,014,888	+		HGI48_RS17885	0.43	+1.0
4,014,888	+		HGI48_RS17885	0.43	-0.4
4,014,888	+		HGI48_RS17885	0.43	+0.1
4,014,889	-		HGI48_RS17885	0.43	-3.1
4,014,889	-		HGI48_RS17885	0.43	-0.6
4,014,889	-		HGI48_RS17885	0.43	+0.6
4,014,889	-		HGI48_RS17885	0.43	+0.2
4,014,909	+		HGI48_RS17885	0.45	+1.3
4,014,909	+		HGI48_RS17885	0.45	+0.3
4,014,910	-		HGI48_RS17885	0.45	+0.4
4,014,910	-		HGI48_RS17885	0.45	-2.6
4,014,910	-		HGI48_RS17885	0.45	-2.0
4,014,910	-		HGI48_RS17885	0.45	-0.2
4,014,910	-		HGI48_RS17885	0.45	-0.5
4,014,944	+		HGI48_RS17885	0.49	-0.6
4,014,951	+		HGI48_RS17885	0.50	-1.0
4,014,951	+		HGI48_RS17885	0.50	+0.2
4,014,951	+		HGI48_RS17885	0.50	-1.3
4,014,951	+		HGI48_RS17885	0.50	-0.5
4,014,952	-		HGI48_RS17885	0.50	+1.1
4,014,952	-		HGI48_RS17885	0.50	-2.1
4,014,955	+		HGI48_RS17885	0.50	-2.3
4,014,955	+		HGI48_RS17885	0.50	-1.8
4,014,955	+		HGI48_RS17885	0.50	-1.0
4,014,955	+		HGI48_RS17885	0.50	-1.3
4,014,955	+				-0.9
4,014,956	-		HGI48_RS17885	0.51	-0.9
4,014,956	-		HGI48_RS17885	0.51	+2.2
4,014,956	-		HGI48_RS17885	0.51	+1.2
4,015,007	+		HGI48_RS17885	0.56	-1.0
4,015,007	+		HGI48_RS17885	0.56	+0.3
4,015,008	-		HGI48_RS17885	0.57	-0.4
4,015,008	-		HGI48_RS17885	0.57	+2.0
4,015,008	-		HGI48_RS17885	0.57	+0.7
4,015,008	-		HGI48_RS17885	0.57	-0.3
4,015,011	+		HGI48_RS17885	0.57	-0.8
4,015,011	+		HGI48_RS17885	0.57	+1.0
4,015,011	+				-0.3
4,015,011	+		HGI48_RS17885	0.57	-1.3
4,015,011	+		HGI48_RS17885	0.57	-0.3
4,015,011	+		HGI48_RS17885	0.57	-0.5
4,015,011	+		HGI48_RS17885	0.57	-1.9
4,015,011	+		HGI48_RS17885	0.57	-1.6
4,015,012	-		HGI48_RS17885	0.57	+0.6
4,015,012	-		HGI48_RS17885	0.57	-1.0
4,015,012	-		HGI48_RS17885	0.57	-0.7
4,015,012	-		HGI48_RS17885	0.57	+1.2
4,015,020	+		HGI48_RS17885	0.58	-0.0
4,015,021	-		HGI48_RS17885	0.58	-1.3
4,015,036	-		HGI48_RS17885	0.60	-1.6
4,015,087	-		HGI48_RS17885	0.66	+0.7
4,015,101	-		HGI48_RS17885	0.67	+0.7
4,015,128	+		HGI48_RS17885	0.70	-1.9
4,015,128	+		HGI48_RS17885	0.70	-1.1
4,015,128	+		HGI48_RS17885	0.70	-0.0
4,015,128	+		HGI48_RS17885	0.70	-1.2
4,015,129	-		HGI48_RS17885	0.71	+0.3
4,015,129	-		HGI48_RS17885	0.71	+0.4
4,015,217	+		HGI48_RS17885	0.81	-0.3
4,015,217	+		HGI48_RS17885	0.81	-0.6
4,015,218	-		HGI48_RS17885	0.81	+1.5
4,015,233	+		HGI48_RS17885	0.83	-0.0
4,015,233	+		HGI48_RS17885	0.83	+0.7
4,015,233	+		HGI48_RS17885	0.83	-0.3
4,015,234	-				+0.1
4,015,234	-		HGI48_RS17885	0.83	-0.0
4,015,234	-		HGI48_RS17885	0.83	-1.0
4,015,234	-		HGI48_RS17885	0.83	+0.8
4,015,234	-		HGI48_RS17885	0.83	+0.9
4,015,234	-		HGI48_RS17885	0.83	-2.1
4,015,234	-				+0.7
4,015,248	+		HGI48_RS17885	0.84	-0.8
4,015,255	+		HGI48_RS17885	0.85	+1.2
4,015,266	+		HGI48_RS17885	0.86	-0.1
4,015,266	+				-0.3
4,015,267	-		HGI48_RS17885	0.87	+1.8
4,015,354	-				+0.1
4,015,354	-				-0.9
4,015,354	-				-1.0
4,015,356	+				-2.1
4,015,356	+				-0.9
4,015,357	-				+1.1
4,015,357	-				+1.7
4,015,357	-				+0.1
4,015,427	-				-1.2
4,015,463	-				-0.3
4,015,513	+				-0.1
4,015,513	+				+0.2
4,015,514	-				-0.9
4,015,514	-				-0.5
4,015,535	+				+1.6
4,015,537	+				-0.6
4,015,537	+				-0.2
4,015,538	-				+0.3
4,015,599	+				+0.3
4,015,599	+				+0.1
4,015,599	+				-0.3
4,015,599	+				-0.0
4,015,599	+				+0.1
4,015,600	-				-0.0
4,015,600	-				+0.1
4,015,600	-				-2.1
4,015,612	-				-0.9
4,015,852	+		HGI48_RS17890	0.37	-0.8
4,015,855	-		HGI48_RS17890	0.38	+1.8
4,015,855	-		HGI48_RS17890	0.38	-0.2
4,015,855	-		HGI48_RS17890	0.38	-0.6
4,015,873	+		HGI48_RS17890	0.40	-2.1
4,015,928	+		HGI48_RS17890	0.46	+0.3
4,015,928	+		HGI48_RS17890	0.46	+0.5
4,015,929	-		HGI48_RS17890	0.46	+0.2
4,015,949	-		HGI48_RS17890	0.48	+0.4
4,015,975	+		HGI48_RS17890	0.51	-0.6
4,015,975	+		HGI48_RS17890	0.51	+0.2
4,015,976	-		HGI48_RS17890	0.51	-0.0
4,016,010	-		HGI48_RS17890	0.55	-1.8
4,016,345	+				-0.6
4,016,345	+				+0.2
4,016,345	+				-0.9
4,016,345	+				+0.1
4,016,345	+				-1.9
4,016,345	+				+0.7
4,016,345	+				+0.5
4,016,346	-				-0.7
4,016,346	-				-1.9
4,016,346	-				+0.3
4,016,346	-				-0.6
4,016,346	-				-1.3
4,016,346	-				-3.0
4,016,346	-				-2.9
4,016,346	-				-0.9
4,016,346	-				-1.3
4,016,347	+				-0.3
4,016,347	+				+0.2
4,016,348	-				+0.4
4,016,348	-				-0.3
4,016,348	-				+0.1
4,016,376	+				+0.4
4,016,376	+				+3.0
4,016,376	+				-0.6
4,016,376	+				+0.8
4,016,376	+				+0.4
4,016,377	-				-0.1
4,016,377	-				+0.7
4,016,377	-				-1.9
4,016,434	+				-2.3
4,016,435	-				-2.1
4,016,467	+				+0.6
4,016,468	-				-0.3
4,016,468	-				+1.7
4,016,513	+				-1.9
4,016,669	-				+0.3
4,016,669	-				+0.0
4,016,696	-				-0.7
4,016,765	+		HGI48_RS17895	0.21	+1.5
4,016,814	-		HGI48_RS17895	0.32	+1.7
4,016,815	+				+2.3
4,016,815	+		HGI48_RS17895	0.32	+0.0
4,016,816	-				+1.1
4,016,816	-		HGI48_RS17895	0.32	-0.3
4,016,909	+		HGI48_RS17895	0.53	+1.0
4,016,910	-		HGI48_RS17895	0.54	-0.1
4,016,910	-		HGI48_RS17895	0.54	+0.1
4,016,945	-		HGI48_RS17895	0.61	+1.3
4,017,004	+		HGI48_RS17895	0.75	+0.7
4,017,061	+		HGI48_RS17895	0.88	-1.3
4,017,062	-		HGI48_RS17895	0.88	+0.9
4,017,104	-				-1.3
4,017,137	+				-0.3
4,017,155	+				+0.9
4,017,156	-				-0.0
4,017,156	-				+0.9
4,017,156	-				-0.3
4,017,156	-				+0.3