Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15885

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,570,287	-				-2.2
3,570,372	+				+0.3
3,570,372	+				-1.7
3,570,377	+				-0.1
3,570,377	+				+1.2
3,570,377	+				+0.1
3,570,378	-				+1.4
3,570,388	+				+0.0
3,570,389	-				+0.3
3,570,415	+		HGI48_RS15875	0.13	-0.4
3,570,416	-		HGI48_RS15875	0.14	-1.7
3,570,416	-		HGI48_RS15875	0.14	-0.0
3,570,434	+		HGI48_RS15875	0.16	+1.9
3,570,434	+		HGI48_RS15875	0.16	+0.8
3,570,435	-		HGI48_RS15875	0.16	+0.6
3,570,595	+		HGI48_RS15875	0.40	-0.3
3,570,596	-		HGI48_RS15875	0.40	-1.0
3,570,596	-		HGI48_RS15875	0.40	+0.0
3,570,596	-		HGI48_RS15875	0.40	-1.4
3,570,599	+				-0.4
3,570,599	+				+2.9
3,570,599	+		HGI48_RS15875	0.40	+1.1
3,570,599	+		HGI48_RS15875	0.40	-0.7
3,570,599	+		HGI48_RS15875	0.40	-0.1
3,570,599	+		HGI48_RS15875	0.40	+0.3
3,570,600	-		HGI48_RS15875	0.40	+0.7
3,570,600	-		HGI48_RS15875	0.40	-2.2
3,570,600	-		HGI48_RS15875	0.40	-1.2
3,570,801	+		HGI48_RS15875	0.70	+0.5
3,570,801	+				-0.4
3,570,802	-		HGI48_RS15875	0.70	-0.1
3,570,802	-		HGI48_RS15875	0.70	+1.2
3,570,802	-		HGI48_RS15875	0.70	-2.6
3,570,802	-		HGI48_RS15875	0.70	-0.6
3,570,802	-		HGI48_RS15875	0.70	-1.4
3,570,851	-		HGI48_RS15875	0.77	+0.5
3,570,894	+				+1.0
3,570,895	-		HGI48_RS15875	0.83	+0.2
3,571,008	-				-0.8
3,571,010	+				+0.4
3,571,010	+				+0.4
3,571,010	+				-0.3
3,571,011	-				+0.1
3,571,051	+				-0.1
3,571,076	+				-2.2
3,571,076	+				-2.0
3,571,076	+				+0.6
3,571,077	-				+0.2
3,571,089	+				-2.2
3,571,089	+				+1.0
3,571,090	-				+0.4
3,571,090	-				+0.6
3,571,090	-				+0.3
3,571,109	+				+1.3
3,571,144	-				+0.2
3,571,163	-		HGI48_RS15880	0.13	-1.7
3,571,220	+		HGI48_RS15880	0.88	-1.4
3,571,221	-				-2.6
3,571,221	-				+1.6
3,571,259	+				-1.1
3,571,259	+				-1.5
3,571,260	+				-0.7
3,571,260	-				-0.4
3,571,260	-				-1.0
3,571,260	-				-1.4
3,571,388	-				+0.4
3,571,422	+				+1.7
3,571,422	+				+2.9
3,571,423	-				+0.9
3,571,504	-				-0.5
3,571,520	-				-1.0
3,571,539	+				+0.3
3,571,539	+				-2.6
3,571,540	-				+0.3
3,571,544	+				-1.0
3,571,544	+				+0.9
3,571,544	+				-0.4
3,571,545	-				-1.7
3,571,545	-				-0.6
3,571,600	+				+1.0
3,571,600	+				+0.8
3,571,601	-				+1.3
3,571,602	+				+1.5
3,571,602	+				+0.2
3,571,602	+				+1.4
3,571,602	+				+0.0
3,571,603	-				-0.1
3,571,610	-				+0.6
3,571,610	-				-0.4
3,571,610	-				-0.1
3,571,610	-				+0.5
3,571,666	+				-1.4
3,571,666	+				-2.6
3,571,667	-				-1.4
3,571,707	-				+0.6
3,571,707	-				+1.0
3,571,778	-		HGI48_RS15890	0.12	-0.2
3,571,780	+		HGI48_RS15890	0.12	-1.4
3,571,780	+		HGI48_RS15890	0.12	-0.1
3,571,780	+		HGI48_RS15890	0.12	+0.4
3,571,781	-		HGI48_RS15890	0.12	-2.2
3,571,781	-		HGI48_RS15890	0.12	-0.9
3,571,781	-		HGI48_RS15890	0.12	-0.9
3,571,781	-		HGI48_RS15890	0.12	+0.4
3,571,781	-		HGI48_RS15890	0.12	-1.4
3,571,781	-		HGI48_RS15890	0.12	-2.0
3,571,784	+		HGI48_RS15890	0.12	-0.5
3,571,784	+				-0.4
3,571,784	+		HGI48_RS15890	0.12	-0.7
3,571,785	-		HGI48_RS15890	0.12	+0.4
3,571,785	-		HGI48_RS15890	0.12	-2.2
3,571,785	-		HGI48_RS15890	0.12	-1.0
3,571,785	-		HGI48_RS15890	0.12	+0.6
3,571,796	-		HGI48_RS15890	0.13	+0.0
3,571,924	+		HGI48_RS15890	0.23	+0.2
3,571,928	-		HGI48_RS15890	0.23	-1.5
3,571,928	-				+0.6
3,571,928	-		HGI48_RS15890	0.23	-0.1
3,571,947	+		HGI48_RS15890	0.25	-1.4
3,571,947	+		HGI48_RS15890	0.25	-1.0
3,571,947	+		HGI48_RS15890	0.25	+0.0
3,571,947	+		HGI48_RS15890	0.25	+0.0
3,571,947	+		HGI48_RS15890	0.25	-1.4
3,571,947	+		HGI48_RS15890	0.25	+0.3
3,571,947	+		HGI48_RS15890	0.25	-1.4
3,571,947	+		HGI48_RS15890	0.25	+0.6
3,571,948	-		HGI48_RS15890	0.25	+0.4
3,571,948	-		HGI48_RS15890	0.25	+0.3
3,571,948	-		HGI48_RS15890	0.25	-2.2
3,571,948	-		HGI48_RS15890	0.25	-0.7
3,571,948	-		HGI48_RS15890	0.25	+1.1
3,571,948	-		HGI48_RS15890	0.25	+0.6
3,571,949	+		HGI48_RS15890	0.25	+1.6
3,571,950	-		HGI48_RS15890	0.25	-0.4
3,571,957	+		HGI48_RS15890	0.26	-0.3
3,571,958	-		HGI48_RS15890	0.26	-2.0
3,571,958	-		HGI48_RS15890	0.26	-0.2
3,571,961	+		HGI48_RS15890	0.26	-0.1
3,571,961	+		HGI48_RS15890	0.26	+0.3
3,571,961	+		HGI48_RS15890	0.26	-1.8
3,571,961	+		HGI48_RS15890	0.26	+0.0
3,571,961	+		HGI48_RS15890	0.26	+0.2
3,571,962	-		HGI48_RS15890	0.26	-0.1
3,571,962	-		HGI48_RS15890	0.26	-0.2
3,571,962	-		HGI48_RS15890	0.26	-0.8
3,571,963	+		HGI48_RS15890	0.26	-2.9
3,571,963	+		HGI48_RS15890	0.26	+0.0
3,571,963	+		HGI48_RS15890	0.26	-0.5
3,571,963	+		HGI48_RS15890	0.26	-0.6
3,571,964	-		HGI48_RS15890	0.26	+0.9
3,571,964	-		HGI48_RS15890	0.26	+0.1
3,571,964	-		HGI48_RS15890	0.26	+2.2
3,571,968	+		HGI48_RS15890	0.27	+0.1
3,571,969	-		HGI48_RS15890	0.27	-0.3
3,571,978	+		HGI48_RS15890	0.27	+0.8
3,572,035	+		HGI48_RS15890	0.32	+0.9
3,572,036	-		HGI48_RS15890	0.32	-1.7
3,572,056	+		HGI48_RS15890	0.33	+1.7
3,572,056	+		HGI48_RS15890	0.33	+0.5
3,572,057	-		HGI48_RS15890	0.34	-0.6
3,572,057	-		HGI48_RS15890	0.34	-0.1
3,572,057	-		HGI48_RS15890	0.34	-0.7
3,572,163	+		HGI48_RS15890	0.42	+0.3
3,572,163	+		HGI48_RS15890	0.42	-0.1
3,572,163	+		HGI48_RS15890	0.42	+0.9
3,572,163	+		HGI48_RS15890	0.42	-0.7
3,572,163	+		HGI48_RS15890	0.42	+0.2
3,572,163	+				-1.0
3,572,163	+		HGI48_RS15890	0.42	-1.4
3,572,163	+		HGI48_RS15890	0.42	-0.1
3,572,164	-		HGI48_RS15890	0.42	+0.9
3,572,164	-		HGI48_RS15890	0.42	+0.4
3,572,164	-		HGI48_RS15890	0.42	+1.6
3,572,167	+		HGI48_RS15890	0.42	-0.6
3,572,167	+		HGI48_RS15890	0.42	-0.4
3,572,167	+		HGI48_RS15890	0.42	+0.5
3,572,168	-		HGI48_RS15890	0.42	-1.4
3,572,168	-		HGI48_RS15890	0.42	+1.4
3,572,168	-		HGI48_RS15890	0.42	-1.1
3,572,168	-		HGI48_RS15890	0.42	+0.1
3,572,168	-				+0.6
3,572,170	+		HGI48_RS15890	0.42	-1.2
3,572,171	-		HGI48_RS15890	0.43	-0.5
3,572,243	+		HGI48_RS15890	0.48	-0.4
3,572,244	-		HGI48_RS15890	0.48	-2.6
3,572,244	-		HGI48_RS15890	0.48	-2.0