Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,133,777	+		HGI48_RS14010	0.23	+0.2
3,133,791	+		HGI48_RS14010	0.24	-0.4
3,133,791	+		HGI48_RS14010	0.24	-1.9
3,133,791	+		HGI48_RS14010	0.24	-0.1
3,133,791	+		HGI48_RS14010	0.24	-2.4
3,133,791	+		HGI48_RS14010	0.24	-0.8
3,133,792	-		HGI48_RS14010	0.25	-1.5
3,133,792	-		HGI48_RS14010	0.25	-0.5
3,133,834	+		HGI48_RS14010	0.28	-0.0
3,133,834	+		HGI48_RS14010	0.28	+0.0
3,133,845	+		HGI48_RS14010	0.29	+0.9
3,133,846	-		HGI48_RS14010	0.29	+0.8
3,133,846	-		HGI48_RS14010	0.29	-0.7
3,133,850	+		HGI48_RS14010	0.30	-0.3
3,133,871	-		HGI48_RS14010	0.32	-1.4
3,133,871	-		HGI48_RS14010	0.32	+1.7
3,133,876	+		HGI48_RS14010	0.32	-2.4
3,133,876	+		HGI48_RS14010	0.32	+0.9
3,133,877	-		HGI48_RS14010	0.32	-1.5
3,133,911	-				+2.0
3,133,987	-		HGI48_RS14010	0.42	-1.4
3,133,987	-		HGI48_RS14010	0.42	+0.7
3,134,033	+		HGI48_RS14010	0.47	-0.5
3,134,033	+		HGI48_RS14010	0.47	+0.1
3,134,034	-		HGI48_RS14010	0.47	+0.3
3,134,074	+		HGI48_RS14010	0.50	+0.5
3,134,196	+		HGI48_RS14010	0.62	-1.0
3,134,196	+		HGI48_RS14010	0.62	-0.9
3,134,197	-		HGI48_RS14010	0.62	-2.1
3,134,197	-		HGI48_RS14010	0.62	+0.3
3,134,286	+		HGI48_RS14010	0.70	+0.5
3,134,286	+		HGI48_RS14010	0.70	+0.0
3,134,286	+		HGI48_RS14010	0.70	-0.2
3,134,287	-				+1.0
3,134,287	-		HGI48_RS14010	0.70	-2.9
3,134,287	-		HGI48_RS14010	0.70	-1.5
3,134,287	-		HGI48_RS14010	0.70	+0.8
3,134,304	+		HGI48_RS14010	0.71	-0.8
3,134,304	+		HGI48_RS14010	0.71	-0.3
3,134,304	+				+2.5
3,134,305	-		HGI48_RS14010	0.72	+0.1
3,134,305	-		HGI48_RS14010	0.72	-0.5
3,134,319	+		HGI48_RS14010	0.73	-0.3
3,134,319	+				-0.5
3,134,320	-		HGI48_RS14010	0.73	-1.1
3,134,320	-		HGI48_RS14010	0.73	-1.5
3,134,320	-		HGI48_RS14010	0.73	-0.9
3,134,325	+		HGI48_RS14010	0.73	+0.1
3,134,325	+				-0.1
3,134,392	+				+1.2
3,134,392	+		HGI48_RS14010	0.79	+0.9
3,134,393	-		HGI48_RS14010	0.80	+1.2
3,134,434	-				+0.9
3,134,434	-		HGI48_RS14010	0.83	+1.3
3,134,451	-		HGI48_RS14010	0.85	+0.1
3,134,482	+		HGI48_RS14010	0.88	+0.5
3,134,531	+				+0.8
3,134,555	+				+2.3
3,134,555	+				-0.4
3,134,556	-				+0.5
3,134,556	-				+2.9
3,134,556	-				+1.0
3,134,556	-				+0.5
3,134,585	+				-0.5
3,134,588	-				+1.0
3,134,598	+				-0.2
3,134,630	+				+0.2
3,134,631	-				-0.4
3,134,641	+				-0.2
3,134,697	-				+0.7
3,134,719	+				-0.9
3,134,719	+				+0.3
3,134,719	+				-0.1
3,134,719	+				-1.5
3,134,719	+				+2.5
3,134,720	-				+1.5
3,134,720	-				-2.4
3,134,836	-		HGI48_RS14015	0.15	+0.0
3,134,845	+		HGI48_RS14015	0.16	+1.3
3,134,845	+		HGI48_RS14015	0.16	+0.9
3,134,845	+		HGI48_RS14015	0.16	+0.6
3,134,845	+		HGI48_RS14015	0.16	+1.3
3,134,845	+		HGI48_RS14015	0.16	+0.3
3,134,846	-		HGI48_RS14015	0.16	-2.9
3,134,846	-		HGI48_RS14015	0.16	-2.4
3,134,846	-		HGI48_RS14015	0.16	+0.5
3,134,846	-		HGI48_RS14015	0.16	+1.2
3,134,849	+		HGI48_RS14015	0.17	-1.4
3,134,849	+		HGI48_RS14015	0.17	-1.5
3,134,850	-				-1.1
3,134,850	-		HGI48_RS14015	0.17	-0.4
3,134,850	-				+0.5
3,134,852	-		HGI48_RS14015	0.17	-0.2
3,134,896	-		HGI48_RS14015	0.25	+0.0
3,134,896	-		HGI48_RS14015	0.25	+0.1
3,134,969	+		HGI48_RS14015	0.38	-0.5
3,134,970	-		HGI48_RS14015	0.39	+1.9
3,134,970	-		HGI48_RS14015	0.39	-0.5
3,135,003	+		HGI48_RS14015	0.44	-0.3
3,135,003	+		HGI48_RS14015	0.44	+0.5
3,135,003	+		HGI48_RS14015	0.44	-0.4
3,135,003	+		HGI48_RS14015	0.44	+0.5
3,135,006	+		HGI48_RS14015	0.45	-0.5
3,135,006	+		HGI48_RS14015	0.45	-2.1
3,135,006	+		HGI48_RS14015	0.45	+0.2
3,135,006	+				+1.5
3,135,006	+				+0.5
3,135,007	-		HGI48_RS14015	0.45	+1.6
3,135,007	-		HGI48_RS14015	0.45	-1.3
3,135,007	-		HGI48_RS14015	0.45	-0.6
3,135,007	-		HGI48_RS14015	0.45	-0.9
3,135,007	-		HGI48_RS14015	0.45	-1.9
3,135,007	-		HGI48_RS14015	0.45	-1.5
3,135,010	+		HGI48_RS14015	0.46	-0.3
3,135,010	+		HGI48_RS14015	0.46	+0.2
3,135,010	+				-1.1
3,135,032	+				-0.5
3,135,032	+				-1.1
3,135,071	+		HGI48_RS14015	0.57	+1.3
3,135,071	+		HGI48_RS14015	0.57	-1.0
3,135,095	+		HGI48_RS14015	0.61	-1.5
3,135,096	-		HGI48_RS14015	0.61	-2.4
3,135,096	-				-0.1
3,135,140	-		HGI48_RS14015	0.69	+0.5
3,135,372	+				-1.9
3,135,372	+				-0.2
3,135,373	-				+1.4
3,135,375	+				+1.0
3,135,401	+				-0.9
3,135,401	+				+0.7
3,135,402	-				-0.3
3,135,402	-				+0.7
3,135,402	-				+0.9
3,135,402	-				-1.1
3,135,407	+				+1.0
3,135,408	-				-1.9
3,135,561	+				+0.1
3,135,713	+				+0.2
3,135,715	+				-0.5
3,135,715	+				+0.1
3,135,715	+				-1.9
3,135,716	-				+0.5
3,135,716	-				+0.5
3,135,716	-				+0.7
3,135,716	-				+1.2
3,135,717	+				-1.1
3,135,717	+				-1.7
3,135,717	+				-1.1
3,135,717	+				+0.8
3,135,717	+				+0.5
3,135,717	+				-1.5
3,135,717	+				-0.5
3,135,717	+				-0.9
3,135,717	+				-0.3
3,135,718	-				-0.5
3,135,718	-				-1.4
3,135,718	-				-0.9
3,135,718	-				-0.1
3,135,718	-				+0.0
3,135,718	-				+2.0
3,135,718	-				+1.0
3,135,718	-				-0.8
3,135,718	-				-0.0
3,135,718	-				+0.5
3,135,718	-				-1.9
3,135,719	+				+0.9
3,135,719	+				+0.8
3,135,720	-				+0.5
3,135,720	-				-2.7
3,135,720	-				-1.4
3,135,720	-				+0.1
3,135,720	-				+0.6
3,135,720	-				+2.5
3,135,721	+				-2.5
3,135,721	+				-1.1
3,135,722	-				-0.4
3,135,724	-				-0.6
3,135,752	-				-0.7
3,135,755	-				-0.2
3,135,782	+				+0.6
3,135,783	-				+0.5
3,135,783	-				+0.0
3,135,790	+				-1.9
3,135,804	+				+1.5
3,135,804	+				-1.5
3,135,805	-				-0.7
3,135,838	+				-0.5
3,135,838	+				+0.5
3,135,839	-				-2.1
3,135,842	-				+0.1
3,135,845	-				-0.8
3,135,959	+				-1.9
3,135,959	+				-1.1
3,135,978	+				-0.8
3,135,978	+				-0.2
3,135,978	+				-0.9
3,135,979	-				+0.2
3,135,979	-				+0.8
3,135,979	-				+0.6
3,135,979	-				+0.1
3,135,990	+				+1.9
3,135,990	+				-1.5
3,135,991	-				-0.5
3,136,055	+				-0.3
3,136,056	-				+0.6
3,136,090	+				-1.5
3,136,091	-				-1.5
3,136,107	-				-1.5
3,136,141	+				-1.3
3,136,142	-				-0.5
3,136,152	+				-0.5
3,136,153	-				-0.9
3,136,191	+		HGI48_RS14020	0.11	-1.0
3,136,192	-		HGI48_RS14020	0.11	-0.7
3,136,192	-		HGI48_RS14020	0.11	+0.0
3,136,222	+		HGI48_RS14020	0.14	-0.4
3,136,227	-		HGI48_RS14020	0.14	-0.3
3,136,227	-		HGI48_RS14020	0.14	+0.0