Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13490

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,954,154	-				-0.0
2,954,158	+				+1.9
2,954,159	-				-0.0
2,954,165	+				+0.7
2,954,165	+				-0.7
2,954,165	+				+0.7
2,954,165	+				+0.5
2,954,165	+				-0.9
2,954,165	+				-0.5
2,954,166	-				+2.0
2,954,166	-				-0.1
2,954,166	-				-1.5
2,954,167	+				-2.5
2,954,167	+				+2.0
2,954,167	+				-0.5
2,954,167	+				-0.5
2,954,168	-				+0.0
2,954,168	-				-0.1
2,954,168	-				-1.9
2,954,168	-				-0.4
2,954,168	-				+1.5
2,954,168	-				-2.1
2,954,168	-				+0.0
2,954,201	+				+0.1
2,954,229	+				+1.5
2,954,229	+				-0.2
2,954,229	+				+0.2
2,954,229	+				+1.0
2,954,229	+				-1.2
2,954,230	-				-1.1
2,954,232	-				+0.9
2,954,282	-				+1.0
2,954,282	-				-0.1
2,954,315	+		HGI48_RS13485	0.12	-0.2
2,954,316	-		HGI48_RS13485	0.12	-2.1
2,954,379	-		HGI48_RS13485	0.19	-0.1
2,954,429	+		HGI48_RS13485	0.24	-2.9
2,954,429	+		HGI48_RS13485	0.24	-0.1
2,954,430	-		HGI48_RS13485	0.24	+1.0
2,954,483	+				+2.2
2,954,483	+		HGI48_RS13485	0.29	-0.9
2,954,483	+		HGI48_RS13485	0.29	+0.8
2,954,483	+		HGI48_RS13485	0.29	+0.1
2,954,483	+		HGI48_RS13485	0.29	-2.1
2,954,494	-				+0.5
2,954,523	+		HGI48_RS13485	0.34	-0.1
2,954,524	-		HGI48_RS13485	0.34	-0.3
2,954,524	-		HGI48_RS13485	0.34	-1.3
2,954,536	-		HGI48_RS13485	0.35	-0.1
2,954,538	+		HGI48_RS13485	0.35	+0.9
2,954,641	-		HGI48_RS13485	0.46	-1.1
2,954,689	-				+1.9
2,954,791	+				+1.2
2,954,930	+		HGI48_RS13485	0.76	+0.2
2,954,930	+		HGI48_RS13485	0.76	-1.4
2,954,930	+		HGI48_RS13485	0.76	-0.9
2,954,930	+		HGI48_RS13485	0.76	+0.8
2,954,930	+		HGI48_RS13485	0.76	-1.5
2,954,931	-		HGI48_RS13485	0.77	-0.1
2,954,931	-				-1.1
2,954,931	-		HGI48_RS13485	0.77	-0.9
2,954,931	-		HGI48_RS13485	0.77	+0.5
2,954,931	-		HGI48_RS13485	0.77	-0.1
2,954,970	+		HGI48_RS13485	0.81	-0.5
2,954,970	+		HGI48_RS13485	0.81	-0.9
2,954,997	+		HGI48_RS13485	0.83	+0.1
2,954,997	+		HGI48_RS13485	0.83	-0.7
2,954,998	-		HGI48_RS13485	0.84	-1.7
2,954,998	-		HGI48_RS13485	0.84	-1.5
2,954,998	-		HGI48_RS13485	0.84	+0.0
2,954,998	-		HGI48_RS13485	0.84	+0.8
2,954,998	-		HGI48_RS13485	0.84	+0.2
2,954,998	-		HGI48_RS13485	0.84	+0.3
2,955,082	+				-1.5
2,955,082	+				+1.0
2,955,082	+				+0.2
2,955,082	+				-0.8
2,955,083	-				+0.9
2,955,083	-				-0.1
2,955,083	-				+1.6
2,955,083	-				-1.9
2,955,083	-				+0.0
2,955,102	+				+2.3
2,955,119	+				-2.0
2,955,120	-				-0.6
2,955,120	-				-0.9
2,955,158	+				+0.5
2,955,158	+				-1.1
2,955,267	-		HGI48_RS13490	0.10	+0.1
2,955,272	+				-0.5
2,955,417	-		HGI48_RS13490	0.24	+1.3
2,955,453	-		HGI48_RS13490	0.27	+1.1
2,955,453	-		HGI48_RS13490	0.27	-0.8
2,955,486	-		HGI48_RS13490	0.30	+0.8
2,955,486	-		HGI48_RS13490	0.30	+0.4
2,955,527	+		HGI48_RS13490	0.34	+0.7
2,955,527	+		HGI48_RS13490	0.34	-0.2
2,955,528	-		HGI48_RS13490	0.34	+0.7
2,955,528	-		HGI48_RS13490	0.34	-0.5
2,955,528	-		HGI48_RS13490	0.34	+1.1
2,955,590	+		HGI48_RS13490	0.39	-1.3
2,955,591	-		HGI48_RS13490	0.39	-1.1
2,955,604	-		HGI48_RS13490	0.41	+0.1
2,955,665	+		HGI48_RS13490	0.46	-0.5
2,955,665	+				-1.1
2,955,666	-		HGI48_RS13490	0.46	+0.3
2,955,701	+		HGI48_RS13490	0.49	-0.6
2,955,701	+		HGI48_RS13490	0.49	-2.1
2,955,701	+		HGI48_RS13490	0.49	+0.5
2,955,702	-				-1.1
2,955,755	+				+0.5
2,955,756	-		HGI48_RS13490	0.54	+0.5
2,955,758	+		HGI48_RS13490	0.55	+0.0
2,955,780	+		HGI48_RS13490	0.56	+0.3
2,955,828	+		HGI48_RS13490	0.61	+0.8
2,955,828	+		HGI48_RS13490	0.61	-0.3
2,955,828	+		HGI48_RS13490	0.61	-2.3
2,955,828	+				+2.3
2,955,828	+		HGI48_RS13490	0.61	+0.5
2,955,828	+		HGI48_RS13490	0.61	-1.5
2,955,828	+				+0.5
2,955,829	-		HGI48_RS13490	0.61	-0.5
2,955,829	-		HGI48_RS13490	0.61	+0.6
2,955,829	-		HGI48_RS13490	0.61	-1.0
2,955,829	-		HGI48_RS13490	0.61	+0.7
2,955,829	-		HGI48_RS13490	0.61	+0.6
2,955,829	-		HGI48_RS13490	0.61	-0.1
2,955,850	+		HGI48_RS13490	0.63	-2.1
2,955,850	+		HGI48_RS13490	0.63	-0.3
2,955,850	+		HGI48_RS13490	0.63	+0.5
2,955,850	+		HGI48_RS13490	0.63	+0.5
2,955,850	+		HGI48_RS13490	0.63	-0.4
2,955,851	-		HGI48_RS13490	0.63	-0.1
2,955,851	-		HGI48_RS13490	0.63	-0.0
2,955,851	-		HGI48_RS13490	0.63	+0.7
2,955,851	-		HGI48_RS13490	0.63	-0.5
2,955,923	+		HGI48_RS13490	0.69	-2.0
2,955,923	+		HGI48_RS13490	0.69	-1.5
2,956,170	-				-1.1
2,956,170	-				+0.6
2,956,187	+				+0.0
2,956,187	+				+0.5
2,956,265	+				+2.0
2,956,265	+				+0.3
2,956,265	+				+0.7
2,956,265	+				+1.5
2,956,265	+				-2.2
2,956,265	+				-1.7
2,956,266	-				+2.0
2,956,266	-				-0.8
2,956,266	-				+0.6
2,956,266	-				+0.5
2,956,266	-				-0.5
2,956,266	-				-0.9
2,956,266	-				+0.5
2,956,266	-				+0.5
2,956,266	-				+1.0
2,956,266	-				-1.9
2,956,266	-				-0.8
2,956,266	-				+0.8
2,956,280	+				-0.4
2,956,280	+				+0.3
2,956,280	+				-1.5
2,956,338	+				-0.2
2,956,339	-				+0.5
2,956,343	+				+1.9
2,956,343	+				-0.7
2,956,344	-				+1.1
2,956,344	-				+0.7
2,956,344	-				-1.1
2,956,344	-				-1.1
2,956,358	+		HGI48_RS13495	0.11	+0.5
2,956,358	+		HGI48_RS13495	0.11	+0.0
2,956,358	+		HGI48_RS13495	0.11	+0.0
2,956,358	+		HGI48_RS13495	0.11	-1.0
2,956,358	+				-0.5
2,956,359	-		HGI48_RS13495	0.11	-0.9
2,956,359	-		HGI48_RS13495	0.11	+0.0
2,956,359	-		HGI48_RS13495	0.11	+1.6
2,956,359	-		HGI48_RS13495	0.11	-0.3
2,956,398	+		HGI48_RS13495	0.17	-1.5
2,956,465	-		HGI48_RS13495	0.26	+1.8
2,956,465	-		HGI48_RS13495	0.26	+0.6
2,956,551	+		HGI48_RS13495	0.38	-2.5
2,956,552	-		HGI48_RS13495	0.38	-0.5
2,956,552	-				+0.5
2,956,605	+		HGI48_RS13495	0.45	-0.5
2,956,606	-		HGI48_RS13495	0.46	+1.5
2,956,740	+		HGI48_RS13495	0.64	-1.1
2,956,740	+		HGI48_RS13495	0.64	+0.1
2,956,740	+		HGI48_RS13495	0.64	-1.1
2,956,740	+		HGI48_RS13495	0.64	+0.2
2,956,740	+		HGI48_RS13495	0.64	-0.4
2,956,740	+		HGI48_RS13495	0.64	+1.6
2,956,740	+		HGI48_RS13495	0.64	-0.3
2,956,741	-		HGI48_RS13495	0.64	-0.1
2,956,741	-				+2.5
2,956,741	-		HGI48_RS13495	0.64	-0.3
2,956,741	-		HGI48_RS13495	0.64	+1.0
2,956,741	-		HGI48_RS13495	0.64	+0.8
2,956,741	-		HGI48_RS13495	0.64	+0.3
2,956,743	+		HGI48_RS13495	0.65	-0.9
2,956,744	-		HGI48_RS13495	0.65	+1.2
2,956,744	-				+0.9
2,956,744	-				+2.0
2,956,757	-		HGI48_RS13495	0.67	+0.8
2,956,799	+		HGI48_RS13495	0.73	-3.5
2,956,799	+		HGI48_RS13495	0.73	+0.8
2,956,799	+		HGI48_RS13495	0.73	-0.5
2,956,799	+		HGI48_RS13495	0.73	-0.4
2,956,799	+		HGI48_RS13495	0.73	+0.1
2,956,799	+		HGI48_RS13495	0.73	+0.7
2,956,800	-		HGI48_RS13495	0.73	-1.7
2,956,800	-				-1.1
2,956,800	-		HGI48_RS13495	0.73	+0.7
2,956,800	-		HGI48_RS13495	0.73	+0.1
2,956,800	-		HGI48_RS13495	0.73	+0.2
2,956,828	-		HGI48_RS13495	0.77	+0.1
2,956,842	+		HGI48_RS13495	0.79	-0.0
2,956,903	+		HGI48_RS13495	0.87	-1.3
2,956,903	+		HGI48_RS13495	0.87	-0.7
2,956,903	+		HGI48_RS13495	0.87	+1.3
2,956,903	+		HGI48_RS13495	0.87	-1.9
2,956,903	+		HGI48_RS13495	0.87	-1.7
2,956,903	+		HGI48_RS13495	0.87	-0.8
2,956,904	-		HGI48_RS13495	0.87	+0.6
2,956,904	-				-1.1
2,956,904	-		HGI48_RS13495	0.87	-1.7
2,956,904	-		HGI48_RS13495	0.87	-0.4
2,956,904	-		HGI48_RS13495	0.87	-0.3
2,956,904	-		HGI48_RS13495	0.87	-2.3
2,956,904	-		HGI48_RS13495	0.87	-0.1
2,956,904	-		HGI48_RS13495	0.87	+0.2
2,956,905	+		HGI48_RS13495	0.87	-1.5
2,956,905	+		HGI48_RS13495	0.87	+1.0
2,956,905	+		HGI48_RS13495	0.87	-2.5
2,956,906	-		HGI48_RS13495	0.87	+0.2
2,956,906	-				+2.3
2,956,906	-		HGI48_RS13495	0.87	+0.6
2,956,906	-		HGI48_RS13495	0.87	+1.0
2,956,906	-				-1.1
2,956,906	-		HGI48_RS13495	0.87	-0.5
2,956,907	+		HGI48_RS13495	0.88	-1.7
2,956,907	+		HGI48_RS13495	0.88	-1.4
2,956,907	+		HGI48_RS13495	0.88	-0.9
2,956,908	-		HGI48_RS13495	0.88	+0.9
2,956,908	-		HGI48_RS13495	0.88	+0.7
2,956,908	-				+3.0
2,956,908	-		HGI48_RS13495	0.88	-0.2
2,956,928	-				+1.4
2,956,940	+				+0.5
2,956,940	+				+0.0
2,956,940	+				+0.6
2,956,940	+				-2.0
2,956,940	+				-2.5
2,956,940	+				+0.3
2,956,941	-				+0.0
2,956,941	-				-0.9
2,956,941	-				+0.5
2,956,941	-				-0.3
2,956,941	-				+0.7
2,956,990	-				-0.5
2,957,030	+				+0.1
2,957,030	+				+0.5
2,957,038	+				-1.4
2,957,038	+				+0.3
2,957,039	-				+1.6
2,957,090	-				+0.0
2,957,102	+				+0.5
2,957,103	-				-0.1
2,957,103	-				+2.8
2,957,106	+				+0.3
2,957,106	+				-0.4
2,957,106	+				-0.6
2,957,107	-				-3.0
2,957,130	+				-1.1
2,957,131	-				+2.3
2,957,180	-				-1.1
2,957,193	+				-1.9
2,957,194	-				-0.5