Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13435

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,944,362	-		HGI48_RS13425	0.60	+0.2
2,944,478	-		HGI48_RS13425	0.69	-1.0
2,944,478	-		HGI48_RS13425	0.69	+0.6
2,944,508	+		HGI48_RS13425	0.71	+0.3
2,944,510	+		HGI48_RS13425	0.71	+0.9
2,944,511	-		HGI48_RS13425	0.71	+1.2
2,944,511	-				-0.5
2,944,582	+		HGI48_RS13425	0.76	-1.5
2,944,582	+		HGI48_RS13425	0.76	+0.2
2,944,582	+		HGI48_RS13425	0.76	-1.5
2,944,583	-		HGI48_RS13425	0.76	-0.3
2,944,583	-		HGI48_RS13425	0.76	+0.1
2,944,583	-		HGI48_RS13425	0.76	+3.0
2,944,583	-		HGI48_RS13425	0.76	-1.5
2,944,633	+		HGI48_RS13425	0.80	-0.5
2,944,634	-		HGI48_RS13425	0.80	+1.2
2,944,634	-		HGI48_RS13425	0.80	+1.3
2,944,645	+		HGI48_RS13425	0.81	+0.0
2,944,671	+		HGI48_RS13425	0.83	-1.7
2,944,672	-				+1.7
2,944,685	+		HGI48_RS13425	0.84	-0.1
2,944,685	+		HGI48_RS13425	0.84	-0.4
2,944,686	-		HGI48_RS13425	0.84	-0.1
2,944,724	+		HGI48_RS13425	0.87	+1.0
2,944,724	+				+1.5
2,944,747	+		HGI48_RS13425	0.88	+1.3
2,944,748	-		HGI48_RS13425	0.88	+0.5
2,944,760	+		HGI48_RS13425	0.89	-0.5
2,944,797	+				-0.8
2,944,797	+				+0.7
2,944,797	+				-1.3
2,944,797	+				+0.9
2,944,798	-				+0.1
2,944,798	-				-0.2
2,944,798	-				-0.7
2,944,929	+				-0.1
2,944,930	-				+0.9
2,944,930	-				-2.4
2,944,971	+				-0.5
2,944,998	-		HGI48_RS13430	0.19	+0.7
2,945,008	+		HGI48_RS13430	0.21	+0.2
2,945,008	+		HGI48_RS13430	0.21	+1.6
2,945,008	+		HGI48_RS13430	0.21	-0.5
2,945,008	+		HGI48_RS13430	0.21	+0.3
2,945,032	-		HGI48_RS13430	0.27	-0.5
2,945,042	+		HGI48_RS13430	0.29	+0.1
2,945,042	+		HGI48_RS13430	0.29	-1.0
2,945,043	-		HGI48_RS13430	0.29	+0.6
2,945,043	-		HGI48_RS13430	0.29	+1.7
2,945,043	-		HGI48_RS13430	0.29	+0.5
2,945,053	-		HGI48_RS13430	0.31	-1.6
2,945,095	-		HGI48_RS13430	0.41	-0.8
2,945,103	+		HGI48_RS13430	0.43	+1.6
2,945,104	-		HGI48_RS13430	0.43	+0.1
2,945,120	-		HGI48_RS13430	0.46	+1.0
2,945,174	+				+2.0
2,945,175	-		HGI48_RS13430	0.59	-2.3
2,945,177	+		HGI48_RS13430	0.59	-0.1
2,945,177	+		HGI48_RS13430	0.59	+0.2
2,945,178	-		HGI48_RS13430	0.60	+0.1
2,945,178	-		HGI48_RS13430	0.60	+0.3
2,945,247	+		HGI48_RS13430	0.75	+1.7
2,945,247	+				-0.5
2,945,248	-		HGI48_RS13430	0.76	-0.2
2,945,248	-		HGI48_RS13430	0.76	-2.3
2,945,250	+		HGI48_RS13430	0.76	+1.4
2,945,250	+		HGI48_RS13430	0.76	+0.4
2,945,251	-		HGI48_RS13430	0.76	-1.9
2,945,275	-		HGI48_RS13430	0.82	-0.3
2,945,353	+				-0.5
2,945,354	-				-1.7
2,945,354	-				-3.0
2,945,354	-				-0.1
2,945,354	-				-0.7
2,945,354	-				+0.6
2,945,354	-				-0.2
2,945,354	-				-2.5
2,945,354	-				-1.1
2,945,357	+				-0.2
2,945,357	+				-2.8
2,945,358	-				-0.5
2,945,358	-				-1.1
2,945,358	-				+0.2
2,945,358	-				-1.1
2,945,358	-				+0.1
2,945,428	+				+1.2
2,945,428	+				-0.5
2,945,428	+				-2.3
2,945,519	+		HGI48_RS13435	0.12	+0.5
2,945,519	+		HGI48_RS13435	0.12	-0.5
2,945,519	+		HGI48_RS13435	0.12	-0.8
2,945,520	-		HGI48_RS13435	0.12	+0.5
2,945,522	+		HGI48_RS13435	0.12	+0.4
2,945,522	+		HGI48_RS13435	0.12	+0.3
2,945,522	+		HGI48_RS13435	0.12	-0.8
2,945,522	+		HGI48_RS13435	0.12	-2.7
2,945,523	-		HGI48_RS13435	0.12	-0.8
2,945,523	-		HGI48_RS13435	0.12	-0.3
2,945,777	+		HGI48_RS13435	0.31	+0.7
2,945,777	+		HGI48_RS13435	0.31	-0.0
2,945,777	+		HGI48_RS13435	0.31	+0.1
2,945,777	+		HGI48_RS13435	0.31	+0.7
2,945,777	+		HGI48_RS13435	0.31	-2.3
2,945,777	+		HGI48_RS13435	0.31	-0.7
2,945,777	+		HGI48_RS13435	0.31	-0.5
2,945,777	+		HGI48_RS13435	0.31	+0.2
2,945,778	-		HGI48_RS13435	0.32	-1.5
2,945,778	-		HGI48_RS13435	0.32	-1.7
2,945,778	-		HGI48_RS13435	0.32	+0.9
2,945,778	-		HGI48_RS13435	0.32	-2.1
2,945,900	+		HGI48_RS13435	0.41	-0.2
2,945,900	+		HGI48_RS13435	0.41	+0.2
2,945,901	-		HGI48_RS13435	0.41	-3.3
2,945,933	+		HGI48_RS13435	0.43	-0.2
2,945,960	+		HGI48_RS13435	0.45	-0.4
2,945,961	-		HGI48_RS13435	0.45	-1.0
2,945,964	-		HGI48_RS13435	0.45	-0.1
2,945,984	+		HGI48_RS13435	0.47	-0.9
2,945,985	-		HGI48_RS13435	0.47	-0.5
2,945,985	-				+0.9
2,945,985	-		HGI48_RS13435	0.47	+1.0
2,945,987	+		HGI48_RS13435	0.47	+1.8
2,945,987	+		HGI48_RS13435	0.47	+0.9
2,945,988	-		HGI48_RS13435	0.47	+0.1
2,945,988	-		HGI48_RS13435	0.47	+0.5
2,946,010	+		HGI48_RS13435	0.49	+0.1
2,946,011	-		HGI48_RS13435	0.49	-0.5
2,946,018	-		HGI48_RS13435	0.50	-0.2
2,946,057	-		HGI48_RS13435	0.52	-1.1
2,946,057	-		HGI48_RS13435	0.52	+1.0
2,946,057	-		HGI48_RS13435	0.52	-0.5
2,946,209	-		HGI48_RS13435	0.64	-0.2
2,946,209	-		HGI48_RS13435	0.64	-0.5
2,946,332	-		HGI48_RS13435	0.73	+0.2
2,946,406	+		HGI48_RS13435	0.79	+0.7
2,946,487	+		HGI48_RS13435	0.85	+0.4
2,946,488	-		HGI48_RS13435	0.85	+0.9
2,946,488	-		HGI48_RS13435	0.85	-0.7
2,946,574	-				-0.3
2,946,574	-				+0.3
2,946,574	-				+1.3
2,946,643	+				-0.8
2,946,643	+				+0.3
2,946,643	+				+0.1
2,946,643	+				-1.5
2,946,643	+				-1.0
2,946,644	-				-0.5
2,946,644	-				-0.0
2,946,644	-				-2.0
2,946,644	-				-1.9
2,946,644	-				-1.4
2,946,711	+				-1.8
2,946,712	-				-0.4
2,946,727	+				-1.1
2,946,727	+				-0.8
2,946,727	+				+0.6
2,946,728	-				-1.1
2,946,728	-				+1.5
2,946,728	-				-0.5
2,946,728	-				+0.1
2,946,742	+				-0.3
2,946,775	+				+1.2
2,946,794	+				-2.1
2,946,817	-				+0.0
2,946,818	+				+0.1
2,946,818	+				-0.2
2,946,819	-				+0.4
2,946,828	+				-0.7
2,946,834	+				-3.6
2,946,835	-				-1.5
2,946,837	+				+1.0
2,946,862	-				-1.5
2,946,862	-				-0.4
2,946,862	-				-2.1
2,946,881	+		HGI48_RS13440	0.12	+0.8
2,946,881	+		HGI48_RS13440	0.12	-0.5
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	-0.9
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	+1.8
2,946,941	+		HGI48_RS13440	0.24	+0.2
2,946,941	+				+1.2
2,946,941	+		HGI48_RS13440	0.24	-0.7
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	-1.1
2,946,941	+		HGI48_RS13440	0.24	-0.9
2,946,941	+		HGI48_RS13440	0.24	+0.8
2,946,942	-		HGI48_RS13440	0.24	-1.9
2,946,942	-		HGI48_RS13440	0.24	-2.3
2,946,942	-		HGI48_RS13440	0.24	-0.1
2,946,942	-		HGI48_RS13440	0.24	+1.2
2,946,942	-		HGI48_RS13440	0.24	-2.4
2,946,942	-		HGI48_RS13440	0.24	-1.3
2,946,942	-		HGI48_RS13440	0.24	-0.1
2,946,942	-		HGI48_RS13440	0.24	-0.2
2,947,015	-		HGI48_RS13440	0.39	-0.5
2,947,066	+		HGI48_RS13440	0.50	-1.9
2,947,066	+		HGI48_RS13440	0.50	+0.7
2,947,066	+		HGI48_RS13440	0.50	-0.3
2,947,066	+		HGI48_RS13440	0.50	-0.9
2,947,067	-		HGI48_RS13440	0.50	-3.1
2,947,067	-		HGI48_RS13440	0.50	-1.2
2,947,067	-		HGI48_RS13440	0.50	-1.7
2,947,067	-		HGI48_RS13440	0.50	-0.3
2,947,067	-		HGI48_RS13440	0.50	-2.9
2,947,067	-		HGI48_RS13440	0.50	+0.0
2,947,067	-		HGI48_RS13440	0.50	-0.5
2,947,067	-		HGI48_RS13440	0.50	-2.9
2,947,067	-		HGI48_RS13440	0.50	-0.7
2,947,067	-		HGI48_RS13440	0.50	+1.8
2,947,067	-		HGI48_RS13440	0.50	+0.7
2,947,067	-		HGI48_RS13440	0.50	-0.0
2,947,067	-		HGI48_RS13440	0.50	-0.7
2,947,067	-		HGI48_RS13440	0.50	-1.1
2,947,123	+				-0.1
2,947,124	-		HGI48_RS13440	0.62	-0.4
2,947,124	-		HGI48_RS13440	0.62	+0.4
2,947,152	+		HGI48_RS13440	0.67	-1.9
2,947,153	-		HGI48_RS13440	0.67	-2.1
2,947,153	-		HGI48_RS13440	0.67	-2.1
2,947,221	+		HGI48_RS13440	0.81	+0.6
2,947,232	+				+1.5
2,947,233	-		HGI48_RS13440	0.84	-0.9
2,947,233	-		HGI48_RS13440	0.84	+0.8
2,947,235	+		HGI48_RS13440	0.84	-0.5
2,947,235	+				-0.1
2,947,264	-				+1.8
2,947,272	-				-0.9
2,947,312	+				+2.0
2,947,312	+				-0.0
2,947,312	+				+0.2
2,947,313	-				-2.7
2,947,313	-				-0.6
2,947,317	-				-1.3
2,947,317	-				+0.2
2,947,317	-				+0.2
2,947,380	-				-3.3
2,947,382	+				+0.7
2,947,382	+				-0.5
2,947,434	+		HGI48_RS13445	0.12	-0.8
2,947,434	+		HGI48_RS13445	0.12	+0.5
2,947,435	-		HGI48_RS13445	0.12	-1.5
2,947,435	-		HGI48_RS13445	0.12	-0.0
2,947,435	-		HGI48_RS13445	0.12	-2.3
2,947,445	+				+1.5
2,947,445	+		HGI48_RS13445	0.13	-0.3
2,947,446	-		HGI48_RS13445	0.13	-1.9
2,947,446	-		HGI48_RS13445	0.13	-2.1
2,947,556	+		HGI48_RS13445	0.24	-1.1
2,947,557	-		HGI48_RS13445	0.24	-0.4
2,947,559	+		HGI48_RS13445	0.24	+0.8
2,947,572	-		HGI48_RS13445	0.25	-1.1
2,947,587	+		HGI48_RS13445	0.27	-0.2
2,947,609	+		HGI48_RS13445	0.29	+0.1
2,947,636	+		HGI48_RS13445	0.31	+0.2
2,947,636	+		HGI48_RS13445	0.31	-2.3
2,947,636	+		HGI48_RS13445	0.31	+0.2
2,947,636	+		HGI48_RS13445	0.31	+1.2
2,947,637	-		HGI48_RS13445	0.31	-2.0
2,947,637	-		HGI48_RS13445	0.31	-2.9
2,947,637	-		HGI48_RS13445	0.31	-2.0
2,947,637	-		HGI48_RS13445	0.31	-0.3