Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13145

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,878,334	+		HGI48_RS13140	0.50	-2.1
2,878,371	-		HGI48_RS13140	0.54	-1.3
2,878,376	+				+1.5
2,878,377	-		HGI48_RS13140	0.55	-0.1
2,878,492	+		HGI48_RS13140	0.65	+0.8
2,878,492	+		HGI48_RS13140	0.65	+0.1
2,878,680	-		HGI48_RS13140	0.83	+1.5
2,878,680	-		HGI48_RS13140	0.83	-0.1
2,878,705	+		HGI48_RS13140	0.85	-0.0
2,878,705	+		HGI48_RS13140	0.85	-0.4
2,878,705	+		HGI48_RS13140	0.85	+0.5
2,878,706	-		HGI48_RS13140	0.85	+0.2
2,878,822	+				+1.0
2,878,822	+				+0.5
2,878,822	+				+1.9
2,878,823	-				+0.3
2,878,823	-				+2.1
2,878,823	-				+0.8
2,878,862	+				-0.5
2,878,863	-				-0.5
2,878,963	+				-0.1
2,878,964	-				-0.5
2,878,985	+				-2.3
2,878,985	+				-1.9
2,879,044	+				+1.1
2,879,044	+				+0.1
2,879,045	-				-0.1
2,879,045	-				-0.1
2,879,065	+				-0.3
2,879,094	-				-2.3
2,879,152	+				+0.5
2,879,164	+				-0.9
2,879,172	+				+2.1
2,879,172	+				+0.9
2,879,173	-				+4.3
2,879,173	-				-0.9
2,879,173	-				+0.9
2,879,173	-				-0.4
2,879,326	+		HGI48_RS13145	0.12	-2.3
2,879,326	+		HGI48_RS13145	0.12	-0.4
2,879,326	+		HGI48_RS13145	0.12	+0.3
2,879,326	+		HGI48_RS13145	0.12	-2.1
2,879,326	+				+0.5
2,879,326	+		HGI48_RS13145	0.12	-0.3
2,879,327	-		HGI48_RS13145	0.12	+0.5
2,879,327	-		HGI48_RS13145	0.12	-2.1
2,879,327	-		HGI48_RS13145	0.12	-1.9
2,879,484	+		HGI48_RS13145	0.23	+2.1
2,879,484	+				-0.1
2,879,485	-		HGI48_RS13145	0.23	+1.2
2,879,485	-		HGI48_RS13145	0.23	+0.3
2,879,485	-		HGI48_RS13145	0.23	+0.2
2,879,487	+		HGI48_RS13145	0.23	-1.3
2,879,488	-				+2.6
2,879,499	+		HGI48_RS13145	0.24	+0.7
2,879,499	+		HGI48_RS13145	0.24	+0.1
2,879,655	+		HGI48_RS13145	0.35	-0.7
2,879,655	+				+2.5
2,879,655	+		HGI48_RS13145	0.35	+1.1
2,879,655	+		HGI48_RS13145	0.35	-1.5
2,879,655	+		HGI48_RS13145	0.35	+0.3
2,879,656	-				-0.5
2,879,656	-		HGI48_RS13145	0.35	-0.7
2,879,656	-		HGI48_RS13145	0.35	-0.9
2,879,705	-		HGI48_RS13145	0.38	-2.3
2,879,705	-		HGI48_RS13145	0.38	+0.1
2,879,814	+		HGI48_RS13145	0.46	-0.3
2,879,814	+				+1.2
2,879,814	+		HGI48_RS13145	0.46	+1.1
2,879,814	+		HGI48_RS13145	0.46	+1.0
2,879,814	+		HGI48_RS13145	0.46	+0.1
2,879,814	+		HGI48_RS13145	0.46	-1.9
2,879,815	-		HGI48_RS13145	0.46	-2.5
2,879,815	-		HGI48_RS13145	0.46	-1.7
2,879,815	-		HGI48_RS13145	0.46	-1.5
2,879,815	-		HGI48_RS13145	0.46	-3.2
2,879,815	-		HGI48_RS13145	0.46	+0.5
2,879,869	+		HGI48_RS13145	0.50	-0.9
2,879,870	-		HGI48_RS13145	0.50	-0.2
2,879,871	+				-1.1
2,879,872	-		HGI48_RS13145	0.50	-0.3
2,879,872	-		HGI48_RS13145	0.50	-0.8
2,879,872	-		HGI48_RS13145	0.50	+1.0
2,879,924	+		HGI48_RS13145	0.54	+0.2
2,879,924	+		HGI48_RS13145	0.54	+0.1
2,879,953	+		HGI48_RS13145	0.56	-1.0
2,879,981	-		HGI48_RS13145	0.58	-0.1
2,879,997	+		HGI48_RS13145	0.59	+0.1
2,879,997	+		HGI48_RS13145	0.59	-1.9
2,879,997	+		HGI48_RS13145	0.59	-0.0
2,879,998	-		HGI48_RS13145	0.59	+0.7
2,879,998	-		HGI48_RS13145	0.59	-0.5
2,879,998	-				-0.5
2,879,998	-		HGI48_RS13145	0.59	-1.9
2,880,002	-		HGI48_RS13145	0.59	+0.2
2,880,162	+		HGI48_RS13145	0.70	+0.7
2,880,201	+				-1.1
2,880,201	+		HGI48_RS13145	0.73	+0.1
2,880,201	+		HGI48_RS13145	0.73	-2.1
2,880,283	+		HGI48_RS13145	0.79	-1.1
2,880,283	+		HGI48_RS13145	0.79	-0.2
2,880,284	-				-1.1
2,880,284	-		HGI48_RS13145	0.79	-1.5
2,880,325	+		HGI48_RS13145	0.82	-1.9
2,880,325	+		HGI48_RS13145	0.82	+0.5
2,880,325	+		HGI48_RS13145	0.82	+0.1
2,880,478	+				+1.1
2,880,478	+				+0.1
2,880,550	+				-0.5
2,880,589	+				-2.1
2,880,589	+				+0.5
2,880,589	+				-2.3
2,880,589	+				+0.4
2,880,589	+				-0.9
2,880,592	+				+0.9
2,880,592	+				+0.1
2,880,593	-				-2.1
2,880,593	-				+1.3
2,880,593	-				-1.3
2,880,593	-				+1.0
2,880,593	-				+0.8
2,880,593	-				-1.5
2,880,609	+				-0.3
2,880,612	+				+0.9
2,880,612	+				+1.2
2,880,612	+				+0.8
2,880,613	-				+0.2
2,880,621	+				-1.1
2,880,679	+				+0.4
2,880,679	+				-3.1
2,880,789	-				-0.4
2,880,800	+				-1.3
2,880,801	-				+0.7
2,880,865	+				-0.7
2,881,004	-		HGI48_RS13150	0.12	-0.8
2,881,014	-		HGI48_RS13150	0.13	+0.2
2,881,182	+		HGI48_RS13150	0.35	-0.5
2,881,183	-		HGI48_RS13150	0.35	+1.0
2,881,183	-		HGI48_RS13150	0.35	-1.2
2,881,183	-		HGI48_RS13150	0.35	+0.1
2,881,184	+		HGI48_RS13150	0.35	-1.3
2,881,184	+		HGI48_RS13150	0.35	-0.7
2,881,184	+		HGI48_RS13150	0.35	+0.7
2,881,184	+		HGI48_RS13150	0.35	+0.2
2,881,184	+		HGI48_RS13150	0.35	-0.6
2,881,184	+		HGI48_RS13150	0.35	+0.1
2,881,184	+		HGI48_RS13150	0.35	-0.7
2,881,185	-		HGI48_RS13150	0.35	-2.1
2,881,290	+				+0.9
2,881,291	-				+1.5
2,881,291	-		HGI48_RS13150	0.48	+0.1
2,881,330	-				-0.5
2,881,330	-		HGI48_RS13150	0.53	+0.3
2,881,330	-		HGI48_RS13150	0.53	-1.1
2,881,400	+		HGI48_RS13150	0.62	-0.0
2,881,403	+		HGI48_RS13150	0.62	+1.1
2,881,403	+		HGI48_RS13150	0.62	+0.6
2,881,403	+		HGI48_RS13150	0.62	-0.4
2,881,403	+				-1.1
2,881,404	-		HGI48_RS13150	0.63	+0.1
2,881,404	-		HGI48_RS13150	0.63	+0.2
2,881,404	-				+0.9
2,881,404	-		HGI48_RS13150	0.63	+0.7
2,881,404	-		HGI48_RS13150	0.63	-1.5
2,881,404	-		HGI48_RS13150	0.63	-0.2
2,881,406	+		HGI48_RS13150	0.63	-0.3
2,881,406	+		HGI48_RS13150	0.63	+0.1
2,881,406	+		HGI48_RS13150	0.63	-0.5
2,881,407	-		HGI48_RS13150	0.63	+0.5
2,881,407	-		HGI48_RS13150	0.63	-0.9
2,881,407	-		HGI48_RS13150	0.63	-1.1
2,881,407	-		HGI48_RS13150	0.63	-1.1
2,881,494	+		HGI48_RS13150	0.74	+0.5
2,881,494	+		HGI48_RS13150	0.74	+0.9
2,881,504	+		HGI48_RS13150	0.75	-0.9
2,881,505	-		HGI48_RS13150	0.75	-0.7
2,881,505	-		HGI48_RS13150	0.75	-1.0
2,881,505	-		HGI48_RS13150	0.75	+1.3
2,881,505	-		HGI48_RS13150	0.75	+0.5
2,881,505	-		HGI48_RS13150	0.75	+0.5
2,881,554	+		HGI48_RS13150	0.81	-1.2
2,881,555	-		HGI48_RS13150	0.82	-0.3