Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09485

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,040,980	-		HGI48_RS09480	0.27	-1.9
2,040,999	-		HGI48_RS09480	0.29	-0.0
2,041,030	+		HGI48_RS09480	0.32	-1.0
2,041,030	+		HGI48_RS09480	0.32	-0.8
2,041,054	+		HGI48_RS09480	0.34	+0.5
2,041,055	-		HGI48_RS09480	0.34	+0.3
2,041,055	-				-1.1
2,041,055	-		HGI48_RS09480	0.34	-0.1
2,041,055	-		HGI48_RS09480	0.34	+1.6
2,041,058	+		HGI48_RS09480	0.34	-1.1
2,041,059	-		HGI48_RS09480	0.34	+0.1
2,041,097	+		HGI48_RS09480	0.38	-1.5
2,041,114	-		HGI48_RS09480	0.39	-1.0
2,041,232	+		HGI48_RS09480	0.50	+1.6
2,041,233	-		HGI48_RS09480	0.50	-0.9
2,041,251	-		HGI48_RS09480	0.52	+1.9
2,041,251	-		HGI48_RS09480	0.52	-0.4
2,041,251	-		HGI48_RS09480	0.52	-0.4
2,041,289	+		HGI48_RS09480	0.55	-0.5
2,041,311	+		HGI48_RS09480	0.57	-0.2
2,041,311	+		HGI48_RS09480	0.57	+0.8
2,041,311	+				-0.1
2,041,312	-		HGI48_RS09480	0.57	+0.8
2,041,312	-		HGI48_RS09480	0.57	+0.3
2,041,312	-		HGI48_RS09480	0.57	-0.2
2,041,336	-		HGI48_RS09480	0.59	-0.1
2,041,336	-		HGI48_RS09480	0.59	-0.3
2,041,336	-				+0.5
2,041,336	-				-0.1
2,041,341	-		HGI48_RS09480	0.60	+0.5
2,041,359	-		HGI48_RS09480	0.61	+0.1
2,041,359	-		HGI48_RS09480	0.61	-2.1
2,041,384	+		HGI48_RS09480	0.64	+0.8
2,041,469	+		HGI48_RS09480	0.71	-0.5
2,041,469	+		HGI48_RS09480	0.71	-2.1
2,041,470	-		HGI48_RS09480	0.71	-0.2
2,041,470	-		HGI48_RS09480	0.71	-1.9
2,041,565	+				-1.1
2,041,565	+		HGI48_RS09480	0.80	-0.1
2,041,565	+				+2.2
2,041,565	+		HGI48_RS09480	0.80	-2.7
2,041,566	-		HGI48_RS09480	0.80	-2.7
2,041,597	+		HGI48_RS09480	0.83	-0.5
2,041,597	+		HGI48_RS09480	0.83	+0.2
2,041,610	+		HGI48_RS09480	0.84	+0.1
2,041,610	+		HGI48_RS09480	0.84	-0.1
2,041,610	+				-1.1
2,041,611	-				+1.7
2,041,611	-				+2.5
2,041,611	-				-0.5
2,041,611	-		HGI48_RS09480	0.84	-1.5
2,041,611	-				+1.9
2,041,611	-		HGI48_RS09480	0.84	-2.1
2,041,611	-		HGI48_RS09480	0.84	+0.1
2,041,679	+				+0.5
2,041,723	-				-0.4
2,041,723	-				+0.8
2,041,723	-				-1.1
2,041,723	-				+0.1
2,041,723	-				+0.1
2,041,723	-				-0.2
2,041,803	+				-3.4
2,041,804	-				+0.1
2,041,804	-				+0.5
2,041,804	-				-0.0
2,041,843	+				-1.0
2,041,901	+				-0.7
2,041,901	+				-0.3
2,041,901	+				-1.1
2,041,902	-				+0.8
2,041,902	-				-2.5
2,041,902	-				-0.3
2,041,902	-				-0.8
2,041,902	-				-0.2
2,041,902	-				-0.3
2,041,902	-				-0.6
2,041,902	-				+1.7
2,041,967	-				+2.9
2,041,982	+				-0.4
2,041,983	-				-1.9
2,042,024	+		HGI48_RS09485	0.11	-1.9
2,042,024	+				+3.0
2,042,024	+		HGI48_RS09485	0.11	+0.6
2,042,024	+		HGI48_RS09485	0.11	+0.0
2,042,024	+		HGI48_RS09485	0.11	-2.3
2,042,024	+		HGI48_RS09485	0.11	-0.1
2,042,024	+		HGI48_RS09485	0.11	-2.1
2,042,025	-				+1.8
2,042,025	-		HGI48_RS09485	0.11	-0.5
2,042,025	-		HGI48_RS09485	0.11	+0.0
2,042,025	-		HGI48_RS09485	0.11	+0.8
2,042,025	-		HGI48_RS09485	0.11	-1.9
2,042,026	+		HGI48_RS09485	0.11	+0.2
2,042,026	+		HGI48_RS09485	0.11	-0.1
2,042,026	+		HGI48_RS09485	0.11	+1.3
2,042,068	+		HGI48_RS09485	0.15	-1.3
2,042,068	+		HGI48_RS09485	0.15	-0.7
2,042,068	+		HGI48_RS09485	0.15	-1.2
2,042,069	-		HGI48_RS09485	0.15	+1.3
2,042,069	-		HGI48_RS09485	0.15	-2.1
2,042,069	-		HGI48_RS09485	0.15	+1.0
2,042,069	-		HGI48_RS09485	0.15	+1.9
2,042,179	+		HGI48_RS09485	0.24	-2.5
2,042,180	-		HGI48_RS09485	0.24	-2.1
2,042,195	+		HGI48_RS09485	0.26	+0.7
2,042,231	-		HGI48_RS09485	0.29	+0.0
2,042,307	+		HGI48_RS09485	0.36	-0.3
2,042,307	+		HGI48_RS09485	0.36	-1.7
2,042,308	-		HGI48_RS09485	0.36	-0.4
2,042,440	+		HGI48_RS09485	0.48	+0.2
2,042,609	+		HGI48_RS09485	0.62	-2.1
2,042,610	-				+0.9
2,042,610	-		HGI48_RS09485	0.63	-2.3
2,042,659	+		HGI48_RS09485	0.67	-1.5
2,042,659	+		HGI48_RS09485	0.67	-1.0
2,042,659	+		HGI48_RS09485	0.67	-0.5
2,042,659	+		HGI48_RS09485	0.67	-3.0
2,042,659	+		HGI48_RS09485	0.67	+0.0
2,042,660	-		HGI48_RS09485	0.67	+0.5
2,042,660	-		HGI48_RS09485	0.67	+0.0
2,042,740	+		HGI48_RS09485	0.74	-0.1
2,042,777	+				+0.5
2,042,777	+		HGI48_RS09485	0.77	+0.8
2,042,778	-		HGI48_RS09485	0.77	+1.3
2,042,778	-		HGI48_RS09485	0.77	-1.9
2,042,778	-		HGI48_RS09485	0.77	-0.6
2,042,859	+		HGI48_RS09485	0.85	+0.1
2,042,859	+		HGI48_RS09485	0.85	-2.5
2,042,859	+		HGI48_RS09485	0.85	+0.1
2,042,859	+				-1.1
2,042,871	-		HGI48_RS09485	0.86	+0.0
2,042,887	+				+2.5
2,042,887	+		HGI48_RS09485	0.87	+1.3
2,042,891	+		HGI48_RS09485	0.88	-2.1
2,042,891	+		HGI48_RS09485	0.88	+0.2
2,042,891	+		HGI48_RS09485	0.88	+0.2
2,042,891	+		HGI48_RS09485	0.88	+1.0
2,042,892	-		HGI48_RS09485	0.88	-1.9
2,042,892	-		HGI48_RS09485	0.88	+0.5
2,042,892	-		HGI48_RS09485	0.88	+0.0
2,043,056	+				-0.1
2,043,056	+				-0.9
2,043,161	-		HGI48_RS09490	0.12	-1.9
2,043,170	+		HGI48_RS09490	0.13	+0.5
2,043,171	-		HGI48_RS09490	0.13	+0.5
2,043,183	+		HGI48_RS09490	0.14	-0.9
2,043,184	-		HGI48_RS09490	0.14	-0.3
2,043,207	+				-0.1
2,043,247	+		HGI48_RS09490	0.21	-0.3
2,043,247	+		HGI48_RS09490	0.21	+0.9
2,043,248	-		HGI48_RS09490	0.21	-1.7
2,043,248	-		HGI48_RS09490	0.21	+0.2
2,043,248	-		HGI48_RS09490	0.21	-2.7
2,043,307	+		HGI48_RS09490	0.27	-0.3
2,043,308	-		HGI48_RS09490	0.27	-1.1
2,043,308	-		HGI48_RS09490	0.27	+0.7
2,043,308	-		HGI48_RS09490	0.27	+1.7
2,043,308	-		HGI48_RS09490	0.27	+0.5
2,043,334	+		HGI48_RS09490	0.30	+0.4
2,043,335	-		HGI48_RS09490	0.30	-0.5
2,043,347	-		HGI48_RS09490	0.31	+0.4
2,043,451	-				+1.7
2,043,506	-		HGI48_RS09490	0.48	+0.5
2,043,611	+		HGI48_RS09490	0.59	-1.5
2,043,613	+				-1.1
2,043,613	+		HGI48_RS09490	0.59	+1.2
2,043,613	+				-0.1
2,043,613	+				+1.7
2,043,613	+		HGI48_RS09490	0.59	+1.1
2,043,613	+		HGI48_RS09490	0.59	-0.3
2,043,613	+		HGI48_RS09490	0.59	-1.3
2,043,614	-		HGI48_RS09490	0.59	-0.9
2,043,614	-		HGI48_RS09490	0.59	-0.1
2,043,614	-				+3.0
2,043,614	-		HGI48_RS09490	0.59	-1.5
2,043,614	-		HGI48_RS09490	0.59	-1.0
2,043,614	-		HGI48_RS09490	0.59	+0.5
2,043,614	-		HGI48_RS09490	0.59	-0.9
2,043,614	-		HGI48_RS09490	0.59	-0.5
2,043,615	+		HGI48_RS09490	0.59	-0.8
2,043,615	+		HGI48_RS09490	0.59	+0.5
2,043,615	+				-1.1
2,043,615	+		HGI48_RS09490	0.59	+1.5
2,043,615	+		HGI48_RS09490	0.59	+1.3
2,043,616	-		HGI48_RS09490	0.59	+0.4
2,043,616	-				+0.5
2,043,616	-		HGI48_RS09490	0.59	+0.0
2,043,616	-		HGI48_RS09490	0.59	+0.7
2,043,628	+		HGI48_RS09490	0.61	-1.1
2,043,628	+		HGI48_RS09490	0.61	-2.3
2,043,628	+		HGI48_RS09490	0.61	-0.2
2,043,628	+		HGI48_RS09490	0.61	-0.0
2,043,629	-		HGI48_RS09490	0.61	+0.0
2,043,635	-		HGI48_RS09490	0.61	+0.6
2,043,635	-		HGI48_RS09490	0.61	+0.0
2,043,685	+		HGI48_RS09490	0.67	+0.8
2,043,686	-		HGI48_RS09490	0.67	+0.7
2,043,799	-		HGI48_RS09490	0.78	-1.8
2,043,818	-		HGI48_RS09490	0.80	-3.0
2,043,855	+				-0.1
2,043,855	+		HGI48_RS09490	0.84	+0.5
2,043,855	+				-1.1
2,043,856	-		HGI48_RS09490	0.84	-0.1
2,043,856	-		HGI48_RS09490	0.84	+0.0
2,043,856	-		HGI48_RS09490	0.84	+0.2
2,043,856	-		HGI48_RS09490	0.84	-1.5
2,043,856	-		HGI48_RS09490	0.84	+0.8
2,043,856	-		HGI48_RS09490	0.84	-1.9
2,043,969	+				+0.7
2,043,970	-				-1.7
2,043,981	+				+0.7
2,043,981	+				+0.3
2,043,982	-				-0.3
2,043,982	-				+0.5