Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08100

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,740,053	-				+0.4
1,740,110	+				-1.4
1,740,110	+				+0.2
1,740,123	+				+0.1
1,740,124	-				-0.3
1,740,127	-				-0.2
1,740,133	-				-0.4
1,740,148	-				+1.8
1,740,165	+				+0.5
1,740,165	+				+0.2
1,740,166	-				-1.9
1,740,166	-				-1.6
1,740,166	-				-1.7
1,740,166	-				+2.2
1,740,166	-				-0.8
1,740,180	+				-2.4
1,740,181	-				+2.0
1,740,181	-				-0.4
1,740,195	+				-0.0
1,740,196	-				-1.1
1,740,269	+		HGI48_RS08095	0.11	-0.2
1,740,269	+		HGI48_RS08095	0.11	+0.1
1,740,269	+		HGI48_RS08095	0.11	-3.3
1,740,270	-		HGI48_RS08095	0.12	-0.6
1,740,270	-				+0.4
1,740,270	-		HGI48_RS08095	0.12	-1.9
1,740,271	+				-1.1
1,740,271	+		HGI48_RS08095	0.12	-0.9
1,740,271	+		HGI48_RS08095	0.12	-1.4
1,740,271	+		HGI48_RS08095	0.12	-0.1
1,740,272	-		HGI48_RS08095	0.12	-0.0
1,740,272	-		HGI48_RS08095	0.12	-0.8
1,740,272	-		HGI48_RS08095	0.12	-1.4
1,740,272	-		HGI48_RS08095	0.12	-0.7
1,740,272	-		HGI48_RS08095	0.12	-0.6
1,740,272	-		HGI48_RS08095	0.12	-2.9
1,740,272	-		HGI48_RS08095	0.12	+0.1
1,740,294	+		HGI48_RS08095	0.15	-1.4
1,740,334	-		HGI48_RS08095	0.20	+0.7
1,740,455	-				-0.6
1,740,488	+		HGI48_RS08095	0.39	-1.4
1,740,488	+		HGI48_RS08095	0.39	-0.4
1,740,526	+		HGI48_RS08095	0.44	-2.7
1,740,527	-		HGI48_RS08095	0.44	+0.0
1,740,527	-		HGI48_RS08095	0.44	+0.1
1,740,527	-		HGI48_RS08095	0.44	+0.8
1,740,628	-		HGI48_RS08095	0.57	-0.6
1,740,652	+		HGI48_RS08095	0.60	+0.3
1,740,788	-				+0.9
1,740,820	-		HGI48_RS08095	0.81	-2.1
1,740,863	-		HGI48_RS08095	0.87	+0.9
1,740,922	+				+1.6
1,740,923	-				-1.9
1,740,927	-				+0.0
1,740,947	-				-0.9
1,740,965	+				-1.1
1,740,975	+				+0.9
1,741,000	+				+0.4
1,741,001	-				-0.9
1,741,001	-				-0.1
1,741,167	+				-0.4
1,741,167	+				-1.4
1,741,180	+				+0.7
1,741,207	-		HGI48_RS08100	0.11	+0.1
1,741,297	+		HGI48_RS08100	0.16	-2.1
1,741,297	+		HGI48_RS08100	0.16	-0.3
1,741,299	+		HGI48_RS08100	0.17	+0.3
1,741,299	+		HGI48_RS08100	0.17	-0.7
1,741,373	+		HGI48_RS08100	0.21	+1.3
1,741,373	+		HGI48_RS08100	0.21	-0.4
1,741,374	-		HGI48_RS08100	0.21	-1.3
1,741,374	-		HGI48_RS08100	0.21	+0.2
1,741,393	+		HGI48_RS08100	0.22	-0.6
1,741,394	-		HGI48_RS08100	0.23	-1.9
1,741,435	-		HGI48_RS08100	0.25	+0.4
1,741,551	+		HGI48_RS08100	0.33	+0.4
1,741,586	-		HGI48_RS08100	0.35	+1.0
1,741,586	-		HGI48_RS08100	0.35	+0.7
1,741,620	+		HGI48_RS08100	0.37	+0.0
1,741,620	+		HGI48_RS08100	0.37	+0.0
1,741,620	+		HGI48_RS08100	0.37	-1.0
1,741,621	-				+0.4
1,741,788	+		HGI48_RS08100	0.48	+0.6
1,741,788	+		HGI48_RS08100	0.48	-0.1
1,741,826	-		HGI48_RS08100	0.50	-0.7
1,741,875	+		HGI48_RS08100	0.53	+0.7
1,741,875	+		HGI48_RS08100	0.53	+0.4
1,742,141	+		HGI48_RS08100	0.70	+2.3
1,742,141	+		HGI48_RS08100	0.70	-1.4
1,742,141	+		HGI48_RS08100	0.70	-0.4
1,742,149	+		HGI48_RS08100	0.70	+0.8
1,742,149	+		HGI48_RS08100	0.70	+0.7
1,742,149	+		HGI48_RS08100	0.70	+0.2
1,742,150	-				-0.6
1,742,150	-		HGI48_RS08100	0.71	-1.1
1,742,150	-		HGI48_RS08100	0.71	-0.1
1,742,150	-		HGI48_RS08100	0.71	-0.3
1,742,150	-		HGI48_RS08100	0.71	+0.4
1,742,317	+		HGI48_RS08100	0.81	-1.7
1,742,318	-		HGI48_RS08100	0.81	-2.1
1,742,318	-		HGI48_RS08100	0.81	+0.9
1,742,332	+		HGI48_RS08100	0.82	-1.7
1,742,332	+		HGI48_RS08100	0.82	-0.3
1,742,333	-		HGI48_RS08100	0.82	+0.7
1,742,334	+		HGI48_RS08100	0.82	-1.1
1,742,334	+		HGI48_RS08100	0.82	+0.6
1,742,334	+		HGI48_RS08100	0.82	-1.7
1,742,334	+		HGI48_RS08100	0.82	-2.9
1,742,335	-		HGI48_RS08100	0.82	+1.0
1,742,335	-		HGI48_RS08100	0.82	-2.4
1,742,369	-		HGI48_RS08100	0.84	-0.8
1,742,369	-		HGI48_RS08100	0.84	-0.9
1,742,388	-		HGI48_RS08100	0.86	-1.0
1,742,426	+		HGI48_RS08100	0.88	+0.7
1,742,427	-		HGI48_RS08100	0.88	+0.4
1,742,427	-		HGI48_RS08100	0.88	+1.4
1,742,464	+				+1.2
1,742,465	-				+0.0
1,742,501	+				-1.1
1,742,502	-				-0.3
1,742,503	+				+0.0
1,742,503	+				+0.2
1,742,503	+				-2.0
1,742,503	+				-0.4
1,742,503	+				+0.6
1,742,504	-				+1.0
1,742,504	-				+0.6
1,742,504	-				-0.1
1,742,504	-				-1.0
1,742,504	-				+2.7
1,742,504	-				-0.3
1,742,504	-				-0.0
1,742,504	-				+0.1
1,742,504	-				-0.2
1,742,504	-				-1.1
1,742,506	-				-0.6
1,742,506	-				-0.0
1,742,519	-				-1.9
1,742,581	+				+0.4
1,742,581	+				-1.3
1,742,582	-				+0.9
1,742,582	-				-0.1
1,742,635	-				+1.3
1,742,635	-				-0.8
1,742,702	+				-1.9
1,742,731	+				-1.6
1,742,731	+				+0.2
1,742,732	-				+0.4
1,742,873	+		HGI48_RS08105	0.16	+0.2
1,742,873	+		HGI48_RS08105	0.16	-1.1
1,742,873	+		HGI48_RS08105	0.16	-1.0
1,742,873	+		HGI48_RS08105	0.16	-0.0
1,742,874	-		HGI48_RS08105	0.16	-0.8
1,742,927	+		HGI48_RS08105	0.22	+0.6
1,742,927	+		HGI48_RS08105	0.22	-2.4
1,742,927	+		HGI48_RS08105	0.22	+0.0
1,742,927	+		HGI48_RS08105	0.22	+1.0
1,742,927	+		HGI48_RS08105	0.22	+0.1
1,742,927	+		HGI48_RS08105	0.22	+0.1
1,742,928	-		HGI48_RS08105	0.22	-0.1
1,742,928	-		HGI48_RS08105	0.22	+1.4
1,742,928	-		HGI48_RS08105	0.22	-0.2
1,742,928	-		HGI48_RS08105	0.22	-0.9
1,742,928	-		HGI48_RS08105	0.22	-0.6
1,742,928	-		HGI48_RS08105	0.22	+0.9
1,742,928	-		HGI48_RS08105	0.22	-0.3
1,742,928	-		HGI48_RS08105	0.22	+0.7
1,742,928	-		HGI48_RS08105	0.22	+0.3
1,742,928	-		HGI48_RS08105	0.22	+1.1
1,742,928	-		HGI48_RS08105	0.22	+0.1
1,743,028	+		HGI48_RS08105	0.33	-0.9
1,743,029	-		HGI48_RS08105	0.33	+0.4
1,743,029	-		HGI48_RS08105	0.33	-0.4
1,743,105	+		HGI48_RS08105	0.41	+0.8
1,743,106	-				-0.1
1,743,106	-		HGI48_RS08105	0.41	-2.6
1,743,118	-		HGI48_RS08105	0.42	+1.2
1,743,228	+		HGI48_RS08105	0.54	-0.2
1,743,229	-		HGI48_RS08105	0.54	+0.0
1,743,280	+		HGI48_RS08105	0.60	-0.9
1,743,280	+		HGI48_RS08105	0.60	-0.0
1,743,281	-		HGI48_RS08105	0.60	-2.1
1,743,292	+		HGI48_RS08105	0.61	-1.9
1,743,292	+		HGI48_RS08105	0.61	-0.1
1,743,292	+		HGI48_RS08105	0.61	-0.1
1,743,292	+				-1.1
1,743,292	+				+0.4
1,743,292	+		HGI48_RS08105	0.61	-0.1
1,743,292	+		HGI48_RS08105	0.61	+2.0
1,743,292	+		HGI48_RS08105	0.61	-1.0
1,743,292	+		HGI48_RS08105	0.61	+1.2
1,743,292	+		HGI48_RS08105	0.61	+0.1
1,743,292	+		HGI48_RS08105	0.61	-2.4
1,743,292	+				+0.4
1,743,292	+		HGI48_RS08105	0.61	+0.0
1,743,292	+		HGI48_RS08105	0.61	-1.4
1,743,293	-		HGI48_RS08105	0.61	+0.1
1,743,293	-		HGI48_RS08105	0.61	-1.4
1,743,293	-				-1.1
1,743,293	-		HGI48_RS08105	0.61	-0.1
1,743,293	-		HGI48_RS08105	0.61	-1.9
1,743,293	-		HGI48_RS08105	0.61	-1.9
1,743,293	-		HGI48_RS08105	0.61	+0.0
1,743,293	-		HGI48_RS08105	0.61	+0.9
1,743,293	-		HGI48_RS08105	0.61	+0.4
1,743,293	-		HGI48_RS08105	0.61	-1.6
1,743,293	-		HGI48_RS08105	0.61	-2.4
1,743,315	+		HGI48_RS08105	0.64	-1.4
1,743,315	+		HGI48_RS08105	0.64	+1.1
1,743,315	+		HGI48_RS08105	0.64	-0.9
1,743,315	+		HGI48_RS08105	0.64	-0.1
1,743,315	+		HGI48_RS08105	0.64	+1.3
1,743,316	-		HGI48_RS08105	0.64	-0.6
1,743,316	-		HGI48_RS08105	0.64	-0.3
1,743,316	-		HGI48_RS08105	0.64	+0.0
1,743,316	-				-0.6
1,743,340	+		HGI48_RS08105	0.66	-0.5
1,743,341	-		HGI48_RS08105	0.66	-1.7
1,743,341	-		HGI48_RS08105	0.66	+0.8
1,743,341	-		HGI48_RS08105	0.66	+0.4
1,743,350	-		HGI48_RS08105	0.67	-0.6
1,743,350	-		HGI48_RS08105	0.67	-0.7
1,743,559	+		HGI48_RS08105	0.90	+1.0
1,743,559	+		HGI48_RS08105	0.90	+0.6
1,743,560	-		HGI48_RS08105	0.90	-0.8
1,743,560	-		HGI48_RS08105	0.90	+0.1
1,743,560	-		HGI48_RS08105	0.90	-0.6
1,743,560	-		HGI48_RS08105	0.90	+0.0
1,743,560	-		HGI48_RS08105	0.90	-0.9
1,743,560	-		HGI48_RS08105	0.90	+0.2