Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07020

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,488,900	+		HGI48_RS07015	0.19	-0.5
1,488,903	+		HGI48_RS07015	0.19	-2.1
1,489,069	+		HGI48_RS07015	0.34	-0.1
1,489,069	+		HGI48_RS07015	0.34	-1.3
1,489,069	+		HGI48_RS07015	0.34	+0.5
1,489,069	+		HGI48_RS07015	0.34	-0.3
1,489,069	+		HGI48_RS07015	0.34	-2.1
1,489,069	+		HGI48_RS07015	0.34	-0.5
1,489,070	-		HGI48_RS07015	0.34	-0.1
1,489,070	-		HGI48_RS07015	0.34	+1.3
1,489,070	-		HGI48_RS07015	0.34	-0.5
1,489,070	-		HGI48_RS07015	0.34	+0.2
1,489,070	-		HGI48_RS07015	0.34	-2.5
1,489,070	-		HGI48_RS07015	0.34	+0.1
1,489,070	-		HGI48_RS07015	0.34	-1.7
1,489,114	+				+1.5
1,489,114	+		HGI48_RS07015	0.38	-0.4
1,489,114	+		HGI48_RS07015	0.38	-0.3
1,489,114	+		HGI48_RS07015	0.38	-0.3
1,489,114	+		HGI48_RS07015	0.38	-2.1
1,489,114	+		HGI48_RS07015	0.38	-1.5
1,489,114	+		HGI48_RS07015	0.38	+0.7
1,489,115	-		HGI48_RS07015	0.38	-0.8
1,489,115	-		HGI48_RS07015	0.38	+1.7
1,489,115	-				+0.5
1,489,115	-		HGI48_RS07015	0.38	-0.3
1,489,115	-		HGI48_RS07015	0.38	-1.1
1,489,193	+		HGI48_RS07015	0.45	-0.1
1,489,213	-		HGI48_RS07015	0.47	+0.1
1,489,291	+		HGI48_RS07015	0.54	+0.8
1,489,291	+		HGI48_RS07015	0.54	+0.8
1,489,292	-		HGI48_RS07015	0.54	-0.7
1,489,292	-		HGI48_RS07015	0.54	+0.1
1,489,348	+		HGI48_RS07015	0.59	-0.4
1,489,348	+		HGI48_RS07015	0.59	-1.3
1,489,349	-		HGI48_RS07015	0.59	+0.5
1,489,349	-		HGI48_RS07015	0.59	-0.5
1,489,349	-		HGI48_RS07015	0.59	-0.5
1,489,349	-				+0.5
1,489,350	+		HGI48_RS07015	0.60	-0.3
1,489,350	+		HGI48_RS07015	0.60	+0.6
1,489,350	+				+1.5
1,489,350	+		HGI48_RS07015	0.60	-2.1
1,489,350	+		HGI48_RS07015	0.60	+1.2
1,489,350	+		HGI48_RS07015	0.60	-0.4
1,489,351	-		HGI48_RS07015	0.60	-0.8
1,489,351	-		HGI48_RS07015	0.60	-1.3
1,489,351	-		HGI48_RS07015	0.60	-2.7
1,489,351	-		HGI48_RS07015	0.60	-2.0
1,489,351	-		HGI48_RS07015	0.60	+0.0
1,489,351	-		HGI48_RS07015	0.60	-0.7
1,489,351	-		HGI48_RS07015	0.60	+0.2
1,489,351	-		HGI48_RS07015	0.60	-3.2
1,489,351	-		HGI48_RS07015	0.60	-0.8
1,489,351	-		HGI48_RS07015	0.60	-0.9
1,489,351	-		HGI48_RS07015	0.60	-0.8
1,489,400	-		HGI48_RS07015	0.64	-0.8
1,489,401	+		HGI48_RS07015	0.64	+0.7
1,489,443	-		HGI48_RS07015	0.68	-0.4
1,489,561	+		HGI48_RS07015	0.79	-0.9
1,489,588	+		HGI48_RS07015	0.81	+0.1
1,489,588	+		HGI48_RS07015	0.81	-0.3
1,489,588	+		HGI48_RS07015	0.81	+1.4
1,489,589	-				+0.9
1,489,589	-		HGI48_RS07015	0.81	+0.9
1,489,688	+				-2.5
1,489,688	+				+1.6
1,489,712	-				-0.3
1,489,712	-				-1.1
1,489,742	+				+0.5
1,489,743	-				-0.9
1,489,763	+				-0.4
1,489,763	+				+0.1
1,489,792	+				-0.1
1,489,793	-				-0.1
1,489,793	-				+1.1
1,489,825	+				+0.5
1,489,825	+				-0.8
1,489,825	+				-0.2
1,489,825	+				+0.5
1,489,826	-				+0.5
1,489,826	-				-0.5
1,489,826	-				+0.3
1,489,911	+		HGI48_RS07020	0.12	-0.5
1,489,912	-		HGI48_RS07020	0.13	+1.0
1,489,931	+		HGI48_RS07020	0.14	-1.1
1,489,932	-		HGI48_RS07020	0.15	-0.5
1,489,932	-		HGI48_RS07020	0.15	-2.5
1,489,934	+		HGI48_RS07020	0.15	-1.8
1,489,934	+		HGI48_RS07020	0.15	-2.1
1,489,935	-		HGI48_RS07020	0.15	+1.9
1,489,935	-		HGI48_RS07020	0.15	-1.1
1,489,935	-		HGI48_RS07020	0.15	+1.4
1,489,935	-		HGI48_RS07020	0.15	+0.4
1,489,982	+		HGI48_RS07020	0.19	+0.4
1,489,983	-		HGI48_RS07020	0.20	+0.2
1,490,014	-		HGI48_RS07020	0.23	+0.3
1,490,050	+				-0.1
1,490,050	+		HGI48_RS07020	0.26	+1.6
1,490,061	+		HGI48_RS07020	0.27	-0.1
1,490,062	-		HGI48_RS07020	0.27	-1.8
1,490,153	-		HGI48_RS07020	0.36	+1.2
1,490,257	+		HGI48_RS07020	0.46	+0.5
1,490,272	+		HGI48_RS07020	0.48	-1.7
1,490,465	-		HGI48_RS07020	0.67	+0.6
1,490,475	-		HGI48_RS07020	0.68	+1.2
1,490,475	-		HGI48_RS07020	0.68	+1.1
1,490,477	+		HGI48_RS07020	0.68	-2.1
1,490,624	+		HGI48_RS07020	0.82	+0.3
1,490,649	-		HGI48_RS07020	0.85	-0.2
1,490,661	-		HGI48_RS07020	0.86	+0.0
1,490,672	+				-1.1
1,490,673	-		HGI48_RS07020	0.87	-0.0
1,490,673	-		HGI48_RS07020	0.87	-2.3
1,490,732	-				+1.4
1,490,768	+				+0.0
1,490,795	+				+0.7
1,490,801	+				+0.5
1,490,801	+				-0.2
1,490,836	+		HGI48_RS07025	0.24	-1.1
1,490,837	-		HGI48_RS07025	0.25	+2.5
1,490,845	+		HGI48_RS07025	0.30	-0.5
1,490,846	-		HGI48_RS07025	0.30	-1.7
1,490,856	+		HGI48_RS07025	0.36	-1.8
1,490,856	+		HGI48_RS07025	0.36	+0.5
1,490,879	+		HGI48_RS07025	0.50	-0.5
1,490,879	+		HGI48_RS07025	0.50	-0.2
1,490,880	-		HGI48_RS07025	0.51	+1.3
1,490,880	-		HGI48_RS07025	0.51	+0.1
1,490,880	-		HGI48_RS07025	0.51	-0.3
1,490,982	-				-1.3
1,491,002	+				-1.5
1,491,047	+		HGI48_RS07030	0.10	-1.5
1,491,049	+		HGI48_RS07030	0.10	-0.1
1,491,049	+		HGI48_RS07030	0.10	+0.5
1,491,049	+				-1.1
1,491,050	-		HGI48_RS07030	0.11	-0.3
1,491,050	-		HGI48_RS07030	0.11	-0.1
1,491,116	+				+3.1
1,491,116	+		HGI48_RS07030	0.18	+0.9
1,491,116	+		HGI48_RS07030	0.18	+0.8
1,491,116	+		HGI48_RS07030	0.18	+2.9
1,491,117	-		HGI48_RS07030	0.19	+1.5
1,491,180	+		HGI48_RS07030	0.26	+1.0
1,491,180	+		HGI48_RS07030	0.26	+0.7
1,491,223	+		HGI48_RS07030	0.31	+1.9
1,491,229	-		HGI48_RS07030	0.32	+1.7
1,491,231	+		HGI48_RS07030	0.32	+1.6
1,491,247	+		HGI48_RS07030	0.34	+2.1
1,491,398	-				+0.9
1,491,401	-		HGI48_RS07030	0.53	+1.7
1,491,447	+		HGI48_RS07030	0.58	-0.3
1,491,485	-		HGI48_RS07030	0.63	-1.4
1,491,487	+		HGI48_RS07030	0.63	+1.7
1,491,529	-		HGI48_RS07030	0.68	+0.7
1,491,560	-		HGI48_RS07030	0.72	-1.8
1,491,581	+		HGI48_RS07030	0.75	+1.9
1,491,607	+		HGI48_RS07030	0.78	+0.8
1,491,688	+				+0.9
1,491,695	-		HGI48_RS07030	0.88	+0.5
1,491,716	+				-1.1
1,491,716	+				+2.0
1,491,716	+				+2.1
1,491,716	+				+0.8
1,491,717	-				-0.2
1,491,718	+				+0.7
1,491,760	+				+1.0
1,491,761	-				-1.5
1,491,764	+				-0.1
1,491,764	+				+0.7
1,491,764	+				+2.0
1,491,764	+				-0.1