Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,485,747	-		HGI48_RS07000	0.17	+1.3
1,485,851	+		HGI48_RS07000	0.26	+0.2
1,485,851	+		HGI48_RS07000	0.26	-0.1
1,485,851	+		HGI48_RS07000	0.26	-1.5
1,485,852	-		HGI48_RS07000	0.26	-1.7
1,485,854	+		HGI48_RS07000	0.26	+0.2
1,485,854	+		HGI48_RS07000	0.26	-0.7
1,485,855	-		HGI48_RS07000	0.26	-1.1
1,485,855	-		HGI48_RS07000	0.26	-1.5
1,485,855	-		HGI48_RS07000	0.26	-0.5
1,485,894	+		HGI48_RS07000	0.30	-0.5
1,485,894	+		HGI48_RS07000	0.30	-1.1
1,485,894	+				-1.1
1,485,894	+		HGI48_RS07000	0.30	-3.0
1,485,894	+		HGI48_RS07000	0.30	-0.7
1,485,894	+		HGI48_RS07000	0.30	-0.5
1,485,895	-				+2.5
1,485,895	-		HGI48_RS07000	0.30	-0.0
1,485,895	-		HGI48_RS07000	0.30	-0.5
1,485,895	-		HGI48_RS07000	0.30	-1.3
1,485,895	-		HGI48_RS07000	0.30	-0.1
1,485,895	-		HGI48_RS07000	0.30	-1.5
1,485,895	-		HGI48_RS07000	0.30	+0.5
1,485,895	-		HGI48_RS07000	0.30	+1.1
1,485,896	+		HGI48_RS07000	0.30	-0.9
1,485,896	+		HGI48_RS07000	0.30	+0.1
1,485,896	+				+1.2
1,485,896	+		HGI48_RS07000	0.30	-1.1
1,485,897	-		HGI48_RS07000	0.30	-0.3
1,485,897	-		HGI48_RS07000	0.30	-0.1
1,485,897	-		HGI48_RS07000	0.30	-0.2
1,485,897	-		HGI48_RS07000	0.30	-1.5
1,485,897	-		HGI48_RS07000	0.30	-0.8
1,485,897	-		HGI48_RS07000	0.30	+0.2
1,485,897	-		HGI48_RS07000	0.30	-1.8
1,485,897	-		HGI48_RS07000	0.30	-0.9
1,485,897	-		HGI48_RS07000	0.30	-1.5
1,485,897	-		HGI48_RS07000	0.30	+0.2
1,485,897	-		HGI48_RS07000	0.30	-0.7
1,485,897	-		HGI48_RS07000	0.30	-0.8
1,485,897	-		HGI48_RS07000	0.30	+0.2
1,485,897	-		HGI48_RS07000	0.30	-1.3
1,485,903	+		HGI48_RS07000	0.30	-1.1
1,485,903	+		HGI48_RS07000	0.30	+0.6
1,485,903	+		HGI48_RS07000	0.30	+0.8
1,485,904	-		HGI48_RS07000	0.31	-1.5
1,485,958	+		HGI48_RS07000	0.35	+0.3
1,486,012	+		HGI48_RS07000	0.40	+0.3
1,486,012	+		HGI48_RS07000	0.40	-1.5
1,486,012	+		HGI48_RS07000	0.40	+1.0
1,486,012	+		HGI48_RS07000	0.40	+0.8
1,486,013	-		HGI48_RS07000	0.40	-0.1
1,486,062	+		HGI48_RS07000	0.44	-0.7
1,486,063	-		HGI48_RS07000	0.44	-1.1
1,486,063	-		HGI48_RS07000	0.44	-0.5
1,486,063	-		HGI48_RS07000	0.44	-0.1
1,486,130	-		HGI48_RS07000	0.50	-0.2
1,486,130	-		HGI48_RS07000	0.50	-2.1
1,486,130	-		HGI48_RS07000	0.50	-0.7
1,486,160	+		HGI48_RS07000	0.52	-1.0
1,486,209	-		HGI48_RS07000	0.56	+0.2
1,486,217	+		HGI48_RS07000	0.57	+0.7
1,486,255	+		HGI48_RS07000	0.60	-1.1
1,486,281	-		HGI48_RS07000	0.62	+0.0
1,486,324	-		HGI48_RS07000	0.66	-1.1
1,486,324	-		HGI48_RS07000	0.66	-1.2
1,486,337	+		HGI48_RS07000	0.67	-0.3
1,486,337	+		HGI48_RS07000	0.67	+0.1
1,486,345	-		HGI48_RS07000	0.68	-0.2
1,486,345	-				-0.5
1,486,354	+		HGI48_RS07000	0.69	-0.5
1,486,354	+				-1.1
1,486,355	-		HGI48_RS07000	0.69	-0.1
1,486,447	+		HGI48_RS07000	0.76	-1.1
1,486,525	+		HGI48_RS07000	0.83	+0.2
1,486,525	+		HGI48_RS07000	0.83	-0.7
1,486,525	+		HGI48_RS07000	0.83	+0.2
1,486,525	+		HGI48_RS07000	0.83	-0.1
1,486,526	-				+2.1
1,486,527	+		HGI48_RS07000	0.83	+0.4
1,486,527	+		HGI48_RS07000	0.83	+0.8
1,486,527	+		HGI48_RS07000	0.83	+0.2
1,486,527	+		HGI48_RS07000	0.83	-0.8
1,486,527	+		HGI48_RS07000	0.83	+0.9
1,486,527	+		HGI48_RS07000	0.83	-3.8
1,486,528	-		HGI48_RS07000	0.83	+0.9
1,486,528	-		HGI48_RS07000	0.83	-0.0
1,486,528	-		HGI48_RS07000	0.83	-2.3
1,486,528	-		HGI48_RS07000	0.83	+0.5
1,486,528	-		HGI48_RS07000	0.83	-0.5
1,486,528	-				-1.1
1,486,528	-				-1.1
1,486,590	+		HGI48_RS07000	0.89	+1.1
1,486,590	+		HGI48_RS07000	0.89	+1.1
1,486,590	+		HGI48_RS07000	0.89	-2.3
1,486,591	-		HGI48_RS07000	0.89	-0.6
1,486,594	+		HGI48_RS07000	0.89	-0.4
1,486,595	-		HGI48_RS07000	0.89	-0.5
1,486,636	-				-2.1
1,486,659	-				-0.6
1,486,664	+				+0.3
1,486,664	+				+1.3
1,486,664	+				-0.5
1,486,665	-				-1.8
1,486,665	-				-0.2
1,486,666	+				+1.5
1,486,667	-				-1.8
1,486,667	-				-1.5
1,486,817	+				-0.1
1,486,818	-				+1.2
1,486,962	-		HGI48_RS07005	0.27	-1.8
1,487,124	-				+0.5
1,487,152	+		HGI48_RS07005	0.49	-1.5
1,487,153	-		HGI48_RS07005	0.49	+0.3
1,487,164	+		HGI48_RS07005	0.51	-2.8
1,487,164	+		HGI48_RS07005	0.51	-0.8
1,487,164	+		HGI48_RS07005	0.51	-1.5
1,487,164	+		HGI48_RS07005	0.51	+0.5
1,487,164	+		HGI48_RS07005	0.51	-1.0
1,487,164	+				-0.1
1,487,165	-		HGI48_RS07005	0.51	-0.6
1,487,165	-				-1.1
1,487,165	-		HGI48_RS07005	0.51	-2.5
1,487,179	-		HGI48_RS07005	0.53	-0.5
1,487,203	+				-0.1
1,487,204	-		HGI48_RS07005	0.56	+0.0
1,487,216	+		HGI48_RS07005	0.57	+1.3
1,487,216	+		HGI48_RS07005	0.57	-2.2
1,487,216	+		HGI48_RS07005	0.57	+0.8
1,487,217	-		HGI48_RS07005	0.57	-1.8
1,487,217	-		HGI48_RS07005	0.57	-2.1
1,487,254	+		HGI48_RS07005	0.62	-0.5
1,487,255	-		HGI48_RS07005	0.62	+0.3
1,487,255	-		HGI48_RS07005	0.62	-0.7
1,487,261	+		HGI48_RS07005	0.62	-1.3
1,487,261	+		HGI48_RS07005	0.62	-1.1
1,487,270	+		HGI48_RS07005	0.63	-1.1
1,487,285	+		HGI48_RS07005	0.65	+0.1
1,487,286	-		HGI48_RS07005	0.65	-1.1
1,487,286	-		HGI48_RS07005	0.65	-0.5
1,487,382	+		HGI48_RS07005	0.77	-0.7
1,487,383	-		HGI48_RS07005	0.77	-2.3
1,487,383	-		HGI48_RS07005	0.77	-1.5
1,487,413	+				-0.1
1,487,448	-		HGI48_RS07005	0.85	-0.1
1,487,448	-		HGI48_RS07005	0.85	-2.0
1,487,483	+		HGI48_RS07005	0.89	+1.1
1,487,484	-		HGI48_RS07005	0.89	-1.8
1,487,492	+				-0.3
1,487,493	-				-0.7
1,487,493	-				-0.2
1,487,516	+				+1.0
1,487,536	+				+0.0
1,487,537	-				+0.5
1,487,537	-				+0.4
1,487,542	+				+0.8
1,487,573	+				+0.3
1,487,574	-				+0.1
1,487,574	-				+0.7
1,487,574	-				-0.5
1,487,574	-				-1.2
1,487,606	-				-1.8
1,487,650	-				-0.1
1,487,671	+				-1.0
1,487,672	-				-0.3
1,487,860	+		HGI48_RS07010	0.25	-0.5
1,487,860	+		HGI48_RS07010	0.25	-0.4
1,487,861	-		HGI48_RS07010	0.25	-0.2
1,487,861	-		HGI48_RS07010	0.25	+0.5
1,487,898	-		HGI48_RS07010	0.28	+0.2
1,487,898	-		HGI48_RS07010	0.28	-1.5
1,487,898	-		HGI48_RS07010	0.28	-0.3
1,487,928	+		HGI48_RS07010	0.31	+0.2
1,487,929	-		HGI48_RS07010	0.31	-2.1
1,487,983	-		HGI48_RS07010	0.36	-1.1
1,487,983	-		HGI48_RS07010	0.36	-0.2
1,487,983	-		HGI48_RS07010	0.36	-2.8
1,488,020	-		HGI48_RS07010	0.39	-0.2
1,488,063	+		HGI48_RS07010	0.43	+0.2
1,488,205	+		HGI48_RS07010	0.56	+0.7
1,488,206	-		HGI48_RS07010	0.56	-0.5
1,488,206	-		HGI48_RS07010	0.56	-1.0
1,488,250	-		HGI48_RS07010	0.60	-0.5
1,488,250	-				-1.1
1,488,260	+		HGI48_RS07010	0.61	+1.1
1,488,334	+				+2.8
1,488,338	-		HGI48_RS07010	0.68	+1.8
1,488,345	-		HGI48_RS07010	0.68	+0.5
1,488,345	-		HGI48_RS07010	0.68	+1.3
1,488,434	-		HGI48_RS07010	0.76	+0.2
1,488,434	-		HGI48_RS07010	0.76	+0.3
1,488,455	+		HGI48_RS07010	0.78	-0.3
1,488,456	-		HGI48_RS07010	0.78	-0.8
1,488,543	-		HGI48_RS07010	0.86	+0.0
1,488,557	+		HGI48_RS07010	0.87	-0.7
1,488,558	-				-1.1
1,488,558	-		HGI48_RS07010	0.87	-0.4