Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06985

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,480,994	+				+2.2
1,481,000	-				-1.8
1,481,067	-				+1.5
1,481,068	+				+0.2
1,481,068	+				-1.8
1,481,068	+				+0.5
1,481,068	+				+1.5
1,481,068	+				+0.5
1,481,068	+				-2.7
1,481,068	+				+0.7
1,481,068	+				+0.1
1,481,068	+				-0.3
1,481,068	+				+0.7
1,481,069	-				+1.1
1,481,069	-				-1.5
1,481,069	-				+1.0
1,481,069	-				-0.7
1,481,069	-				+2.0
1,481,069	-				-0.1
1,481,069	-				-0.1
1,481,069	-				-0.0
1,481,072	+				-0.0
1,481,072	+				-0.7
1,481,072	+				+0.9
1,481,103	-				-0.2
1,481,111	-				+0.4
1,481,140	+				+0.5
1,481,140	+				-0.6
1,481,141	-				-2.3
1,481,174	+				-0.5
1,481,175	-				-0.1
1,481,175	-				+0.8
1,481,175	-				-1.3
1,481,176	+				+0.8
1,481,177	-				+1.2
1,481,177	-				-0.2
1,481,182	+				-0.5
1,481,185	-				+1.3
1,481,185	-				+1.7
1,481,185	-				-1.1
1,481,229	+				+1.6
1,481,230	-				+0.6
1,481,356	+		HGI48_RS06980	0.22	+0.0
1,481,364	+		HGI48_RS06980	0.23	+0.3
1,481,365	-		HGI48_RS06980	0.23	-0.3
1,481,466	+		HGI48_RS06980	0.37	+0.3
1,481,466	+		HGI48_RS06980	0.37	+0.5
1,481,467	-				+2.3
1,481,467	-				-1.1
1,481,471	+		HGI48_RS06980	0.38	-1.3
1,481,471	+		HGI48_RS06980	0.38	-2.1
1,481,471	+		HGI48_RS06980	0.38	-0.4
1,481,472	-		HGI48_RS06980	0.38	-2.3
1,481,472	-		HGI48_RS06980	0.38	-0.8
1,481,472	-		HGI48_RS06980	0.38	-0.2
1,481,475	+		HGI48_RS06980	0.38	+1.3
1,481,475	+		HGI48_RS06980	0.38	+0.2
1,481,475	+		HGI48_RS06980	0.38	+0.4
1,481,475	+		HGI48_RS06980	0.38	-0.5
1,481,475	+		HGI48_RS06980	0.38	-0.6
1,481,475	+		HGI48_RS06980	0.38	+0.8
1,481,475	+		HGI48_RS06980	0.38	+1.4
1,481,476	-		HGI48_RS06980	0.38	+1.1
1,481,476	-		HGI48_RS06980	0.38	+1.8
1,481,476	-		HGI48_RS06980	0.38	-1.8
1,481,476	-		HGI48_RS06980	0.38	+0.6
1,481,612	+		HGI48_RS06980	0.56	-0.1
1,481,613	-		HGI48_RS06980	0.57	+0.5
1,481,714	+				+1.5
1,481,714	+		HGI48_RS06980	0.70	-0.3
1,481,715	-		HGI48_RS06980	0.70	-0.3
1,481,715	-		HGI48_RS06980	0.70	+0.2
1,481,715	-		HGI48_RS06980	0.70	-0.5
1,481,722	+		HGI48_RS06980	0.71	+0.5
1,481,727	-		HGI48_RS06980	0.72	+0.2
1,481,736	-		HGI48_RS06980	0.73	+0.8
1,481,736	-		HGI48_RS06980	0.73	+1.3
1,481,854	+		HGI48_RS06980	0.89	+0.4
1,481,855	-		HGI48_RS06980	0.89	-0.2
1,481,924	-				-0.5
1,481,943	+				-0.3
1,482,011	+				+2.7
1,482,051	-				-0.7
1,482,051	-				+0.8
1,482,113	+		HGI48_RS06985	0.14	+1.3
1,482,113	+		HGI48_RS06985	0.14	-0.5
1,482,181	+		HGI48_RS06985	0.19	-0.4
1,482,181	+		HGI48_RS06985	0.19	-2.5
1,482,181	+		HGI48_RS06985	0.19	-0.1
1,482,182	-		HGI48_RS06985	0.19	+0.8
1,482,200	+		HGI48_RS06985	0.21	-0.0
1,482,200	+		HGI48_RS06985	0.21	+0.7
1,482,292	+		HGI48_RS06985	0.28	-2.3
1,482,292	+		HGI48_RS06985	0.28	-0.8
1,482,292	+		HGI48_RS06985	0.28	-0.1
1,482,293	-		HGI48_RS06985	0.28	+0.5
1,482,336	+		HGI48_RS06985	0.31	+0.7
1,482,389	+		HGI48_RS06985	0.36	-0.1
1,482,389	+		HGI48_RS06985	0.36	+0.5
1,482,390	-		HGI48_RS06985	0.36	+1.2
1,482,390	-		HGI48_RS06985	0.36	-2.4
1,482,405	-		HGI48_RS06985	0.37	-2.5
1,482,420	-		HGI48_RS06985	0.38	-1.8
1,482,420	-		HGI48_RS06985	0.38	-1.1
1,482,420	-		HGI48_RS06985	0.38	-0.8
1,482,420	-				-0.1
1,482,420	-		HGI48_RS06985	0.38	-0.2
1,482,422	+				+1.2
1,482,423	-		HGI48_RS06985	0.38	+0.4
1,482,423	-		HGI48_RS06985	0.38	+2.5
1,482,423	-		HGI48_RS06985	0.38	-0.1
1,482,423	-		HGI48_RS06985	0.38	+1.3
1,482,426	+		HGI48_RS06985	0.39	-0.5
1,482,427	-		HGI48_RS06985	0.39	+1.8
1,482,427	-		HGI48_RS06985	0.39	+1.1
1,482,427	-		HGI48_RS06985	0.39	-0.2
1,482,456	+		HGI48_RS06985	0.41	+0.5
1,482,456	+		HGI48_RS06985	0.41	-1.1
1,482,457	-		HGI48_RS06985	0.41	+0.3
1,482,457	-		HGI48_RS06985	0.41	+0.1
1,482,457	-				+0.5
1,482,458	+		HGI48_RS06985	0.41	+0.9
1,482,459	-		HGI48_RS06985	0.41	+0.2
1,482,497	-		HGI48_RS06985	0.44	+1.2
1,482,498	+		HGI48_RS06985	0.44	-1.1
1,482,498	+		HGI48_RS06985	0.44	+0.3
1,482,498	+		HGI48_RS06985	0.44	-2.3
1,482,498	+		HGI48_RS06985	0.44	-0.2
1,482,498	+				-1.1
1,482,498	+		HGI48_RS06985	0.44	+0.2
1,482,498	+		HGI48_RS06985	0.44	-0.7
1,482,498	+		HGI48_RS06985	0.44	-0.5
1,482,498	+		HGI48_RS06985	0.44	-1.1
1,482,498	+		HGI48_RS06985	0.44	-0.5
1,482,502	+		HGI48_RS06985	0.45	+0.3
1,482,502	+		HGI48_RS06985	0.45	+0.5
1,482,502	+		HGI48_RS06985	0.45	-0.8
1,482,503	-		HGI48_RS06985	0.45	+0.4
1,482,503	-		HGI48_RS06985	0.45	+1.1
1,482,503	-		HGI48_RS06985	0.45	+0.3
1,482,503	-		HGI48_RS06985	0.45	-1.1
1,482,515	+		HGI48_RS06985	0.46	-0.2
1,482,516	-		HGI48_RS06985	0.46	-1.3
1,482,554	-		HGI48_RS06985	0.49	-1.8
1,482,601	+				-1.1
1,482,602	-		HGI48_RS06985	0.53	+0.7
1,482,609	-		HGI48_RS06985	0.53	-2.3
1,482,634	-		HGI48_RS06985	0.55	-0.5
1,482,685	+		HGI48_RS06985	0.59	-0.4
1,482,749	+		HGI48_RS06985	0.64	+0.6
1,482,750	-		HGI48_RS06985	0.64	+0.1
1,482,750	-		HGI48_RS06985	0.64	+0.2
1,482,776	+				+0.9
1,482,776	+				+0.5
1,482,809	+		HGI48_RS06985	0.69	+1.0
1,482,810	-		HGI48_RS06985	0.69	-0.2
1,482,886	+		HGI48_RS06985	0.75	-0.9
1,482,887	-		HGI48_RS06985	0.75	+0.1
1,482,888	+		HGI48_RS06985	0.75	+0.5
1,482,894	-		HGI48_RS06985	0.76	-1.2
1,482,975	-		HGI48_RS06985	0.82	-1.3
1,482,975	-		HGI48_RS06985	0.82	-0.3
1,482,986	+				-1.1
1,483,014	-				+0.5
1,483,035	+		HGI48_RS06985	0.87	-0.1
1,483,036	-		HGI48_RS06985	0.87	+0.2
1,483,036	-		HGI48_RS06985	0.87	+1.3
1,483,075	+				-1.3
1,483,076	-				-2.3
1,483,080	+				+0.5
1,483,097	+				+1.0
1,483,201	-				-0.5
1,483,208	-				-0.3
1,483,241	-				-0.4
1,483,293	+				-0.2
1,483,329	-				+1.9
1,483,370	+				-1.1
1,483,372	+				+2.1
1,483,408	+				-1.5
1,483,426	-				+1.1
1,483,442	+				-1.1
1,483,504	+				+0.1
1,483,504	+				-0.9
1,483,504	+				-1.1
1,483,585	+				+1.5
1,483,586	-				-0.5
1,483,724	-		HGI48_RS06990	0.25	-1.0
1,483,803	+		HGI48_RS06990	0.34	+0.1
1,483,942	+		HGI48_RS06990	0.50	-0.3
1,483,943	-		HGI48_RS06990	0.50	+0.6
1,483,989	+		HGI48_RS06990	0.55	-1.1
1,483,990	-		HGI48_RS06990	0.55	-0.5
1,484,068	-		HGI48_RS06990	0.64	-1.5
1,484,068	-		HGI48_RS06990	0.64	-0.0
1,484,146	-		HGI48_RS06990	0.72	-1.7
1,484,150	-		HGI48_RS06990	0.73	+0.5
1,484,150	-		HGI48_RS06990	0.73	-0.1
1,484,150	-		HGI48_RS06990	0.73	-0.1
1,484,156	+		HGI48_RS06990	0.73	+0.3
1,484,156	+		HGI48_RS06990	0.73	-0.1
1,484,157	-		HGI48_RS06990	0.74	+0.7
1,484,157	-		HGI48_RS06990	0.74	+1.2
1,484,157	-		HGI48_RS06990	0.74	+1.1
1,484,157	-		HGI48_RS06990	0.74	+0.5
1,484,157	-		HGI48_RS06990	0.74	+0.4
1,484,159	+		HGI48_RS06990	0.74	+0.5
1,484,159	+		HGI48_RS06990	0.74	+2.0
1,484,159	+		HGI48_RS06990	0.74	-1.0
1,484,159	+		HGI48_RS06990	0.74	+0.1
1,484,160	-		HGI48_RS06990	0.74	+0.4