Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06400

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,354,739	+		HGI48_RS06390	0.83	-0.8
1,354,740	-		HGI48_RS06390	0.83	-0.0
1,354,740	-		HGI48_RS06390	0.83	-0.8
1,354,740	-		HGI48_RS06390	0.83	-1.7
1,354,808	+				+0.6
1,354,809	-				+0.5
1,354,901	+				+1.5
1,354,901	+				+1.3
1,354,940	+				-0.0
1,354,940	+				+2.4
1,354,995	-				+1.1
1,355,011	+				+1.5
1,355,011	+				-2.7
1,355,030	+				-0.3
1,355,031	-				+0.8
1,355,110	-				-1.6
1,355,116	+				+0.5
1,355,116	+				+1.2
1,355,117	-				+2.1
1,355,117	-				+0.5
1,355,117	-				+1.2
1,355,119	-				+1.2
1,355,144	+				+1.3
1,355,144	+				+0.2
1,355,145	-				-0.4
1,355,152	+				-0.1
1,355,152	+				+0.0
1,355,172	+				-2.0
1,355,224	-		HGI48_RS06395	0.11	-0.8
1,355,250	-		HGI48_RS06395	0.16	+0.7
1,355,641	+		HGI48_RS06395	0.88	-0.5
1,355,701	+				+0.1
1,355,701	+				-0.2
1,355,702	-				-1.4
1,355,702	-				-1.3
1,355,734	+				-2.7
1,355,734	+				+0.5
1,355,780	-				-1.5
1,355,780	-				-3.0
1,355,805	-				-1.2
1,355,805	-				+0.5
1,355,807	+				+0.5
1,355,807	+				-2.7
1,355,807	+				-1.8
1,355,807	+				-1.5
1,355,807	+				-0.1
1,355,807	+				-0.7
1,355,807	+				-0.1
1,355,807	+				-0.9
1,355,808	-				+0.5
1,355,808	-				-0.5
1,355,808	-				-0.3
1,355,808	-				-2.4
1,355,808	-				+1.5
1,355,808	-				-0.9
1,355,808	-				-0.8
1,355,808	-				+0.7
1,355,808	-				-2.7
1,355,808	-				-1.1
1,355,808	-				-0.5
1,355,808	-				+0.1
1,355,808	-				-0.8
1,355,849	-				-0.1
1,355,849	-				-1.8
1,355,908	+		HGI48_RS06400	0.11	-0.4
1,355,972	+		HGI48_RS06400	0.15	-1.6
1,355,972	+		HGI48_RS06400	0.15	-2.2
1,355,972	+		HGI48_RS06400	0.15	-1.8
1,355,972	+		HGI48_RS06400	0.15	-1.5
1,355,972	+		HGI48_RS06400	0.15	-3.2
1,355,972	+		HGI48_RS06400	0.15	-0.8
1,355,972	+		HGI48_RS06400	0.15	+0.2
1,355,972	+		HGI48_RS06400	0.15	-0.8
1,355,972	+		HGI48_RS06400	0.15	-1.8
1,355,973	-		HGI48_RS06400	0.15	-0.5
1,355,973	-		HGI48_RS06400	0.15	-1.1
1,355,973	-		HGI48_RS06400	0.15	-0.1
1,355,973	-		HGI48_RS06400	0.15	-2.9
1,356,013	+		HGI48_RS06400	0.17	-0.6
1,356,014	-		HGI48_RS06400	0.17	+1.0
1,356,014	-		HGI48_RS06400	0.17	-0.6
1,356,115	-		HGI48_RS06400	0.23	+0.5
1,356,157	+		HGI48_RS06400	0.26	-2.3
1,356,158	-		HGI48_RS06400	0.26	+0.1
1,356,169	+		HGI48_RS06400	0.27	-1.5
1,356,169	+		HGI48_RS06400	0.27	-2.6
1,356,197	+		HGI48_RS06400	0.28	-1.7
1,356,197	+		HGI48_RS06400	0.28	-1.6
1,356,197	+		HGI48_RS06400	0.28	-2.3
1,356,197	+		HGI48_RS06400	0.28	-1.5
1,356,197	+		HGI48_RS06400	0.28	-1.5
1,356,198	-				-0.1
1,356,198	-				-0.5
1,356,198	-		HGI48_RS06400	0.29	-0.8
1,356,198	-		HGI48_RS06400	0.29	-0.3
1,356,198	-				+0.5
1,356,198	-		HGI48_RS06400	0.29	+0.1
1,356,198	-		HGI48_RS06400	0.29	-2.3
1,356,359	+		HGI48_RS06400	0.38	+0.1
1,356,359	+		HGI48_RS06400	0.38	-2.5
1,356,359	+		HGI48_RS06400	0.38	+0.2
1,356,359	+		HGI48_RS06400	0.38	-0.1
1,356,359	+				+0.5
1,356,359	+		HGI48_RS06400	0.38	-1.5
1,356,359	+		HGI48_RS06400	0.38	-3.1
1,356,359	+		HGI48_RS06400	0.38	-1.4
1,356,360	-		HGI48_RS06400	0.38	-0.5
1,356,360	-		HGI48_RS06400	0.38	-2.1
1,356,360	-				+0.5
1,356,360	-		HGI48_RS06400	0.38	-2.3
1,356,360	-				-1.1
1,356,360	-		HGI48_RS06400	0.38	-1.5
1,356,467	-		HGI48_RS06400	0.45	+0.8
1,356,479	+		HGI48_RS06400	0.46	-2.9
1,356,479	+				+2.5
1,356,647	+				+0.5
1,356,698	+		HGI48_RS06400	0.59	-1.5
1,356,698	+		HGI48_RS06400	0.59	-1.1
1,356,699	-		HGI48_RS06400	0.59	-1.8
1,356,719	+		HGI48_RS06400	0.60	-1.1
1,356,719	+		HGI48_RS06400	0.60	-3.5
1,356,719	+		HGI48_RS06400	0.60	-2.5
1,356,719	+		HGI48_RS06400	0.60	-0.5
1,356,719	+		HGI48_RS06400	0.60	-0.8
1,356,719	+		HGI48_RS06400	0.60	-0.0
1,356,720	-				+1.5
1,356,720	-				-0.1
1,356,720	-		HGI48_RS06400	0.60	-1.5
1,356,767	-		HGI48_RS06400	0.63	-2.3
1,356,848	-		HGI48_RS06400	0.68	-2.5
1,356,848	-		HGI48_RS06400	0.68	-0.8
1,356,953	-				+1.2
1,357,025	+				+1.5
1,357,025	+		HGI48_RS06400	0.79	-1.5
1,357,025	+		HGI48_RS06400	0.79	-1.2
1,357,025	+		HGI48_RS06400	0.79	-3.3
1,357,026	-		HGI48_RS06400	0.79	-0.1
1,357,026	-		HGI48_RS06400	0.79	-0.7
1,357,026	-		HGI48_RS06400	0.79	-1.8
1,357,026	-		HGI48_RS06400	0.79	-2.5
1,357,061	+		HGI48_RS06400	0.81	-1.0
1,357,062	-		HGI48_RS06400	0.81	+0.5
1,357,062	-				-0.1
1,357,062	-				-1.1
1,357,062	-		HGI48_RS06400	0.81	-1.1
1,357,062	-				-0.1
1,357,271	+				-2.5
1,357,271	+				+0.5
1,357,271	+				-2.1
1,357,271	+				-1.7
1,357,271	+				-2.5
1,357,271	+				-0.8
1,357,271	+				-0.9
1,357,272	-				-2.1
1,357,272	-				+0.7
1,357,280	+				+1.5
1,357,280	+				+1.5
1,357,281	-				-1.5
1,357,281	-				+0.5
1,357,281	-				-1.7
1,357,370	+				+0.8
1,357,430	+				+0.3
1,357,431	-				+1.1
1,357,431	-				+0.2
1,357,451	+				+1.4
1,357,451	+				-0.7
1,357,451	+				+2.4
1,357,451	+				-0.5
1,357,451	+				-0.7
1,357,452	-				+0.8
1,357,561	+		HGI48_RS06405	0.27	-2.1
1,357,562	-		HGI48_RS06405	0.27	+1.1
1,357,562	-		HGI48_RS06405	0.27	+0.7
1,357,562	-		HGI48_RS06405	0.27	-0.3
1,357,562	-		HGI48_RS06405	0.27	+0.8
1,357,562	-		HGI48_RS06405	0.27	-0.5
1,357,605	-		HGI48_RS06405	0.37	-1.5
1,357,612	+		HGI48_RS06405	0.39	+0.4
1,357,631	+				+0.5
1,357,656	-		HGI48_RS06405	0.49	-1.8
1,357,656	-		HGI48_RS06405	0.49	-1.2
1,357,689	-		HGI48_RS06405	0.57	-0.3
1,357,859	+				-0.2
1,357,859	+				+1.9
1,357,859	+				-2.5
1,357,867	+				-1.0
1,357,868	-				+0.5
1,357,868	-				+0.5
1,357,907	+				-0.2
1,357,960	+				+0.2
1,357,961	-				+0.7
1,357,968	-				-1.8
1,358,053	+		HGI48_RS06410	0.14	-0.5
1,358,053	+		HGI48_RS06410	0.14	-0.3
1,358,053	+		HGI48_RS06410	0.14	+0.6
1,358,054	-		HGI48_RS06410	0.14	-0.5
1,358,054	-		HGI48_RS06410	0.14	-0.3
1,358,065	+		HGI48_RS06410	0.15	-0.2
1,358,065	+		HGI48_RS06410	0.15	+0.2
1,358,344	+		HGI48_RS06410	0.56	-1.8
1,358,344	+		HGI48_RS06410	0.56	+1.4
1,358,345	-		HGI48_RS06410	0.56	-0.3